Literature DB >> 28348033

Minimal Cells-Real and Imagined.

John I Glass1, Chuck Merryman1, Kim S Wise1, Clyde A Hutchison1, Hamilton O Smith1.   

Abstract

A minimal cell is one whose genome only encodes the minimal set of genes necessary for the cell to survive. Scientific reductionism postulates the best way to learn the first principles of cellular biology would be to use a minimal cell in which the functions of all genes and components are understood. The genes in a minimal cell are, by definition, essential. In 2016, synthesis of a genome comprised of only the set of essential and quasi-essential genes encoded by the bacterium Mycoplasma mycoides created a near-minimal bacterial cell. This organism performs the cellular functions common to all organisms. It replicates DNA, transcribes RNA, translates proteins, undergoes cell division, and little else. In this review, we examine this organism and contrast it with other bacteria that have been used as surrogates for a minimal cell.
Copyright © 2017 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2017        PMID: 28348033      PMCID: PMC5710109          DOI: 10.1101/cshperspect.a023861

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  36 in total

1.  A whole-cell computational model predicts phenotype from genotype.

Authors:  Jonathan R Karr; Jayodita C Sanghvi; Derek N Macklin; Miriam V Gutschow; Jared M Jacobs; Benjamin Bolival; Nacyra Assad-Garcia; John I Glass; Markus W Covert
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

2.  Creation of a bacterial cell controlled by a chemically synthesized genome.

Authors:  Daniel G Gibson; John I Glass; Carole Lartigue; Vladimir N Noskov; Ray-Yuan Chuang; Mikkel A Algire; Gwynedd A Benders; Michael G Montague; Li Ma; Monzia M Moodie; Chuck Merryman; Sanjay Vashee; Radha Krishnakumar; Nacyra Assad-Garcia; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Lei Young; Zhi-Qing Qi; Thomas H Segall-Shapiro; Christopher H Calvey; Prashanth P Parmar; Clyde A Hutchison; Hamilton O Smith; J Craig Venter
Journal:  Science       Date:  2010-05-20       Impact factor: 47.728

3.  Design and synthesis of a minimal bacterial genome.

Authors:  Clyde A Hutchison; Ray-Yuan Chuang; Vladimir N Noskov; Nacyra Assad-Garcia; Thomas J Deerinck; Mark H Ellisman; John Gill; Krishna Kannan; Bogumil J Karas; Li Ma; James F Pelletier; Zhi-Qing Qi; R Alexander Richter; Elizabeth A Strychalski; Lijie Sun; Yo Suzuki; Billyana Tsvetanova; Kim S Wise; Hamilton O Smith; John I Glass; Chuck Merryman; Daniel G Gibson; J Craig Venter
Journal:  Science       Date:  2016-03-25       Impact factor: 47.728

4.  The completeness of molecular biology.

Authors:  H J Morowitz
Journal:  Isr J Med Sci       Date:  1984-09

5.  Essential genes of a minimal bacterium.

Authors:  John I Glass; Nacyra Assad-Garcia; Nina Alperovich; Shibu Yooseph; Matthew R Lewis; Mahir Maruf; Clyde A Hutchison; Hamilton O Smith; J Craig Venter
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-03       Impact factor: 11.205

6.  Functional analysis of the genes of yeast chromosome V by genetic footprinting.

Authors:  V Smith; K N Chou; D Lashkari; D Botstein; P O Brown
Journal:  Science       Date:  1996-12-20       Impact factor: 47.728

Review 7.  Bacillus subtilis and Escherichia coli essential genes and minimal cell factories after one decade of genome engineering.

Authors:  Mario Juhas; Daniel R Reuß; Bingyao Zhu; Fabian M Commichau
Journal:  Microbiology       Date:  2014-08-04       Impact factor: 2.777

8.  Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system.

Authors:  Byung Jo Yu; Bong Hyun Sung; Michael D Koob; Choong Hoon Lee; Jun Hyoung Lee; Won Sik Lee; Mi Sun Kim; Sun Chang Kim
Journal:  Nat Biotechnol       Date:  2002-09-16       Impact factor: 54.908

9.  Phylogenetic analysis of the mycoplasmas.

Authors:  C R Woese; J Maniloff; L B Zablen
Journal:  Proc Natl Acad Sci U S A       Date:  1980-01       Impact factor: 11.205

Review 10.  Towards synthesis of a minimal cell.

Authors:  Anthony C Forster; George M Church
Journal:  Mol Syst Biol       Date:  2006-08-22       Impact factor: 11.429

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  18 in total

1.  Non-essential ribosomal proteins in bacteria and archaea identified using COGs.

Authors:  Michael Y Galperin; Yuri I Wolf; Sofya K Garushyants; Roberto Vera Alvarez; Eugene V Koonin
Journal:  J Bacteriol       Date:  2021-03-22       Impact factor: 3.490

Review 2.  Synthetic chromosomes, genomes, viruses, and cells.

Authors:  J Craig Venter; John I Glass; Clyde A Hutchison; Sanjay Vashee
Journal:  Cell       Date:  2022-07-21       Impact factor: 66.850

3.  Genome Engineering of the Fast-Growing Mycoplasma feriruminatoris toward a Live Vaccine Chassis.

Authors:  Vincent Talenton; Vincent Baby; Geraldine Gourgues; Charlotte Mouden; Stephane Claverol; Sanjay Vashee; Alain Blanchard; Fabien Labroussaa; Joerg Jores; Yonathan Arfi; Pascal Sirand-Pugnet; Carole Lartigue
Journal:  ACS Synth Biol       Date:  2022-05-05       Impact factor: 5.249

4.  Let the robotic games begin.

Authors:  Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2022-04-19       Impact factor: 12.779

Review 5.  Variability of Bacterial Essential Genes Among Closely Related Bacteria: The Case of Escherichia coli.

Authors:  Enrique Martínez-Carranza; Hugo Barajas; Luis-David Alcaraz; Luis Servín-González; Gabriel-Yaxal Ponce-Soto; Gloria Soberón-Chávez
Journal:  Front Microbiol       Date:  2018-05-29       Impact factor: 5.640

Review 6.  The Macromolecular Machines that Duplicate the Escherichia coli Chromosome as Targets for Drug Discovery.

Authors:  Jon M Kaguni
Journal:  Antibiotics (Basel)       Date:  2018-03-14

7.  An emerging role for cyclic dinucleotide phosphodiesterase and nanoRNase activities in Mycoplasma bovis: Securing survival in cell culture.

Authors:  Xifang Zhu; Eric Baranowski; Yaqi Dong; Xixi Li; Zhiyu Hao; Gang Zhao; Hui Zhang; Doukun Lu; Muhammad A Rasheed; Yingyu Chen; Changmin Hu; Huanchun Chen; Eveline Sagné; Christine Citti; Aizhen Guo
Journal:  PLoS Pathog       Date:  2020-06-29       Impact factor: 6.823

Review 8.  Blocking the Trigger: Inhibition of the Initiation of Bacterial Chromosome Replication as an Antimicrobial Strategy.

Authors:  Julia E Grimwade; Alan C Leonard
Journal:  Antibiotics (Basel)       Date:  2019-08-06

9.  Computer-Aided Whole-Cell Design: Taking a Holistic Approach by Integrating Synthetic With Systems Biology.

Authors:  Lucia Marucci; Matteo Barberis; Jonathan Karr; Oliver Ray; Paul R Race; Miguel de Souza Andrade; Claire Grierson; Stefan Andreas Hoffmann; Sophie Landon; Elibio Rech; Joshua Rees-Garbutt; Richard Seabrook; William Shaw; Christopher Woods
Journal:  Front Bioeng Biotechnol       Date:  2020-08-07

10.  Genome-scale metabolic modeling reveals key features of a minimal gene set.

Authors:  Jean-Christophe Lachance; Dominick Matteau; Joëlle Brodeur; Colton J Lloyd; Nathan Mih; Zachary A King; Thomas F Knight; Adam M Feist; Jonathan M Monk; Bernhard O Palsson; Pierre-Étienne Jacques; Sébastien Rodrigue
Journal:  Mol Syst Biol       Date:  2021-07       Impact factor: 11.429

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