| Literature DB >> 28337178 |
María Del Carmen Muñoz-Marín1, Guadalupe Gómez-Baena2, Jesús Díez1, Robert J Beynon2, David González-Ballester1, Mikhail V Zubkov3, José M García-Fernández1.
Abstract
We have previously shown that Prochlorococcus sp.Entities:
Keywords: gene expression; marine cyanobacteria; mixotrophy; proteomics; transporter kinetics
Year: 2017 PMID: 28337178 PMCID: PMC5340979 DOI: 10.3389/fmicb.2017.00327
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
List of primers utilized in quantification of gene expression by semi-quantitative RT-PCR.
| Gene | Protein | Primer | Sequence |
|---|---|---|---|
| Glucose transporter | Forward | GCTTTTATGGCAGGTTCTTT | |
| Reverse | CAAATAGCCGCAAGACTCAG | ||
| Phosphoribulokinase | Forward | ATGGTGGTGTTGTTGGAGAT | |
| Reverse | CCTTTCAGCA TTGTCACGAT | ||
| Fructose 1-6 biphosphate aldolase | Forward | ATAGGTGAAGAGGTTGGGAG | |
| Reverse | ATCAGAAGCAGCCAATACAG | ||
| Glucose-1P-adenylyltransferase | Forward | TTGCGTTTTAGGCGTTAGAA | |
| Reverse | TCGTTCCCTGACCTACTCCA | ||
| Transaldolase | Forward | TATTTGGCTTTTCTCAGGC | |
| Reverse | GTCCTTCCCTGTTTCTGCT | ||
| Glyceraldehyde-3-phosphate dehydrogenase | Forward | GGTAACGCAAGAAGAAGTCA | |
| Reverse | TGAGTTTTGTTGACCACCAT | ||
| Pyruvate kinase | Forward | TTCAATTGGTATGGGGTGTA | |
| Reverse | GGGTTCCTGCTGTTTCTACT | ||
| Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit | Forward | CCTGGAGACA TTTGGCTT | |
| Reverse | GTCTGCA TGGAGCCACTT | ||
| Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit | Forward | TCGCCCTCTTGTTGGTTG | |
| Reverse | CCTGGCCTGTCTGTTGCT | ||
| RNase subunit B | Forward | TCCCAAAAGACCAGACTTGCT | |
| Reverse | GTATGTTTCTGTGGCACTCTCCT | ||
| RNase subunit B (used in natural samples; | Forward | GGCAAGGGTGCAAAGGTG | |
| Reverse | GCCGGGGTTTACCTAGCC |
Kinetics parameters in the Prochlorococcus sp. strains PCC 9511, MIT9303, NATL1A, NATL2A, and TAK9803-2.
| Cyanobacteria | Ks | Vmax (pmol min-1mg prot-1) | Efficiency | |
|---|---|---|---|---|
| Phase 1 | 124.60 ± 7.15 nM | 6.36 ± 0.19 | 0.051 ± 0.0033 | |
| SS120 (LL II/III) | Phase 2 | 2.37 ± 0.87 μM | 16.15 ± 1.37 | 0.007 ± 0.0026 |
| Phase 1 | 15 ± 1.40 nM | 1.76 ± 0.51 | 0.12 ± 0.036 | |
| PCC 9511 (HL I) | Phase 2 | 1.09 ± 0.36 μM | 5.23 ± 0.75 | 0.005 ± 0.0017 |
| Phase 1 | 26 ± 4.22 nM | 2.06 ± 0.41 | 0.079 ± 0.020 | |
| MIT9303 (LL IV) | Phase 2 | 0.92 ± 0.38 μM | 5.09 ± 2.77 | 0.0055 ± 0.0038 |
| Phase 1 | 24 ± 3.45 nM | 1.08 ± 0.24 | 0.045 ± 0.012 | |
| NATL2 (LL I) | Phase 2 | 0.88 ± 0.31 μM | 2.40 ± 0.24 | 0.0027 ± 0.0001 |
| Phase 1 | 19 ± 1.95 nM | 0.48 ± 0.09 | 0.025 ± 0.005 | |
| NATL1 (LL I) | Phase 2 | 1.58 ± 0.17 μM | 0.94 ± 0.17 | 0.0006 ± 0.0001 |
| Phase 1 | 56 ± 5.33 nM | 2.41 ± 0.76 | 0.043 ± 0.014 | |
| TAK9803-2 (HL II) | ||||
| Phase 1 | 21.55 ± 1.70 nM | 0.16 ± 0.01 | 0.0074 ± 0.0007 | |
| WH 7803 | Phase 2 | 2.86 ± 0.22 μM | 1.21 ± 0.18 | 0.00042 ± 0.00007 |