Literature DB >> 28328310

Developing Human Radiation Biodosimetry Models: Testing Cross-Species Conversion Approaches Using an Ex Vivo Model System.

Jin G Park1, Sunirmal Paul2, Natalia Briones1, Jia Zeng1,3, Kristin Gillis1, Garrick Wallstrom1,3, Joshua LaBaer1,4, Sally A Amundson2.   

Abstract

In the event of a large-scale radiation exposure, accurate and quick assessment of radiation dose received would be critical for triage and medical treatment of large numbers of potentially exposed individuals. Current methods of biodosimetry, such as the dicentric chromosome assay, are time consuming and require sophisticated equipment and highly trained personnel. Therefore, scalable biodosimetry approaches, including gene expression profiles in peripheral blood cells, are being investigated. Due to the limited availability of appropriate human samples, biodosimetry development has relied heavily on mouse models, which are not directly applicable to human response. Therefore, to explore the feasibility of using non-human primate (NHP) models to build and test a biodosimetry algorithm for use in humans, we irradiated ex vivo peripheral blood samples from both humans and rhesus macaques with doses of 0, 2, 5, 6 and 7 Gy, and compared the gene expression profiles 24 h later using Agilent human microarrays. Among the dose-responsive genes in human and using non-human primate, 52 genes showed highly correlated expression patterns between the species, and were enriched in p53/DNA damage response, apoptosis and cell cycle-related genes. When these interspecies-correlated genes were used to build biodosimetry models with using NHP data, the mean prediction accuracy on non-human primate samples was about 90% within 1 Gy of delivered dose in leave-one-out cross-validation. However, tests on human samples suggested that human gene expression values may need to be adjusted prior to application of the NHP model. A "multi-gene" approach utilizing all gene values for cross-species conversion and applying the converted values on the NHP biodosimetry models, gave a leave-one-out cross-validation prediction accuracy for human samples highly comparable (up to 94%) to that for non-human primates. Overall, this study demonstrates that a robust NHP biodosimetry model can be built using interspecies-correlated genes, and that, by using multiple regression-based cross-species conversion of expression values, absorbed dose in human samples can be accurately predicted by the NHP model.

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Year:  2017        PMID: 28328310      PMCID: PMC5996993          DOI: 10.1667/RR14655.1

Source DB:  PubMed          Journal:  Radiat Res        ISSN: 0033-7587            Impact factor:   2.841


  55 in total

1.  Gene expression comparisons performed for biodosimetry purposes on in vitro peripheral blood cellular subsets and irradiated individuals.

Authors:  A Riecke; C G Rufa; M Cordes; J Hartmann; V Meineke; M Abend
Journal:  Radiat Res       Date:  2012-07-07       Impact factor: 2.841

2.  Gene expression analysis in radiotherapy patients and C57BL/6 mice as a measure of exposure to ionizing radiation.

Authors:  Ashley N Filiano; Hassan M Fathallah-Shaykh; John Fiveash; Jarrod Gage; Alan Cantor; Sandhya Kharbanda; Martin R Johnson
Journal:  Radiat Res       Date:  2011-03-01       Impact factor: 2.841

3.  Ionizing radiation down-regulates histone H1 gene expression by transcriptional and post-transcriptional mechanisms.

Authors:  R Datta; R Weichselbaum; D W Kufe
Journal:  Radiat Res       Date:  1993-02       Impact factor: 2.841

4.  DNA damage induces downregulation of histone gene expression through the G1 checkpoint pathway.

Authors:  Chuan Su; Guang Gao; Sandra Schneider; Christopher Helt; Carsten Weiss; Michael A O'Reilly; Dirk Bohmann; Jiyong Zhao
Journal:  EMBO J       Date:  2004-02-19       Impact factor: 11.598

5.  The RABIT: a rapid automated biodosimetry tool for radiological triage.

Authors:  Guy Garty; Youhua Chen; Alessio Salerno; Helen Turner; Jian Zhang; Oleksandra Lyulko; Antonella Bertucci; Yanping Xu; Hongliang Wang; Nabil Simaan; Gerhard Randers-Pehrson; Y Lawrence Yao; Sally A Amundson; David J Brenner
Journal:  Health Phys       Date:  2010-02       Impact factor: 1.316

6.  Antibody-based screen for ionizing radiation-dependent changes in the Mammalian proteome for use in biodosimetry.

Authors:  Richard G Ivey; Oby Subramanian; Travis D Lorentzen; Amanda G Paulovich
Journal:  Radiat Res       Date:  2009-05       Impact factor: 2.841

7.  Radiation metabolomics. 5. Identification of urinary biomarkers of ionizing radiation exposure in nonhuman primates by mass spectrometry-based metabolomics.

Authors:  Caroline H Johnson; Andrew D Patterson; Kristopher W Krausz; John F Kalinich; John B Tyburski; Dong Wook Kang; Hans Luecke; Frank J Gonzalez; William F Blakely; Jeffrey R Idle
Journal:  Radiat Res       Date:  2012-09-06       Impact factor: 2.841

8.  Gene expression signatures that predict radiation exposure in mice and humans.

Authors:  Holly K Dressman; Garrett G Muramoto; Nelson J Chao; Sarah Meadows; Dawn Marshall; Geoffrey S Ginsburg; Joseph R Nevins; John P Chute
Journal:  PLoS Med       Date:  2007-04       Impact factor: 11.069

9.  Genome-wide analysis of the human p53 transcriptional network unveils a lncRNA tumour suppressor signature.

Authors:  Yolanda Sánchez; Victor Segura; Oskar Marín-Béjar; Alejandro Athie; Francesco P Marchese; Jovanna González; Luis Bujanda; Shuling Guo; Ander Matheu; Maite Huarte
Journal:  Nat Commun       Date:  2014-12-19       Impact factor: 14.919

10.  The Reactome pathway knowledgebase.

Authors:  David Croft; Antonio Fabregat Mundo; Robin Haw; Marija Milacic; Joel Weiser; Guanming Wu; Michael Caudy; Phani Garapati; Marc Gillespie; Maulik R Kamdar; Bijay Jassal; Steven Jupe; Lisa Matthews; Bruce May; Stanislav Palatnik; Karen Rothfels; Veronica Shamovsky; Heeyeon Song; Mark Williams; Ewan Birney; Henning Hermjakob; Lincoln Stein; Peter D'Eustachio
Journal:  Nucleic Acids Res       Date:  2013-11-15       Impact factor: 16.971

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  15 in total

1.  Development of Biomarkers for Radiation Biodosimetry and Medical Countermeasures Research: Current Status, Utility, and Regulatory Pathways.

Authors:  Merriline M Satyamitra; Andrea L DiCarlo; Brynn A Hollingsworth; Thomas A Winters; Lanyn P Taliaferro
Journal:  Radiat Res       Date:  2022-05-01       Impact factor: 3.372

2.  Gene Expression in Parp1 Deficient Mice Exposed to a Median Lethal Dose of Gamma Rays.

Authors:  M A Suresh Kumar; Evagelia C Laiakis; Shanaz A Ghandhi; Shad R Morton; Albert J Fornace; Sally A Amundson
Journal:  Radiat Res       Date:  2018-05-10       Impact factor: 2.841

3.  The transcriptomic revolution and radiation biology.

Authors:  Sally A Amundson
Journal:  Int J Radiat Biol       Date:  2021-10-11       Impact factor: 3.352

4.  NIH Policies and Regulatory Pathways to U.S. FDA licensure: Strategies to Inform Advancement of Radiation Medical Countermeasures and Biodosimetry Devices.

Authors:  Merriline M Satyamitra; Zulmarie Perez-Horta; Andrea L DiCarlo; David R Cassatt; Carmen I Rios; Paul W Price; Lanyn P Taliaferro
Journal:  Radiat Res       Date:  2022-05-01       Impact factor: 3.372

5.  Whole thorax irradiation of non-human primates induces persistent nuclear damage and gene expression changes in peripheral blood cells.

Authors:  Shanaz A Ghandhi; Helen C Turner; Igor Shuryak; Gregory O Dugan; J Daniel Bourland; John D Olson; Janet A Tooze; Shad R Morton; Ines Batinic-Haberle; J Mark Cline; Sally A Amundson
Journal:  PLoS One       Date:  2018-01-19       Impact factor: 3.240

6.  Candidate gene biodosimetry markers of exposure to external ionizing radiation in human blood: A systematic review.

Authors:  Jerome Lacombe; Chao Sima; Sally A Amundson; Frederic Zenhausern
Journal:  PLoS One       Date:  2018-06-07       Impact factor: 3.240

7.  New Approaches for Quantitative Reconstruction of Radiation Dose in Human Blood Cells.

Authors:  Shanaz A Ghandhi; Igor Shuryak; Shad R Morton; Sally A Amundson; David J Brenner
Journal:  Sci Rep       Date:  2019-12-05       Impact factor: 4.379

8.  Candidate protein markers for radiation biodosimetry in the hematopoietically humanized mouse model.

Authors:  Younghyun Lee; Monica Pujol Canadell; Igor Shuryak; Jay R Perrier; Maria Taveras; Purvi Patel; Antonius Koller; Lubomir B Smilenov; David J Brenner; Emily I Chen; Helen C Turner
Journal:  Sci Rep       Date:  2018-09-10       Impact factor: 4.379

9.  Transcriptomic responses in mouse blood during the first week after in vivo gamma irradiation.

Authors:  Sunirmal Paul; Norman J Kleiman; Sally A Amundson
Journal:  Sci Rep       Date:  2019-12-04       Impact factor: 4.379

10.  The RABiT-II DCA in the Rhesus Macaque Model.

Authors:  Ekaterina Royba; Mikhail Repin; Adayabalam S Balajee; Igor Shuryak; Sergey Pampou; Charles Karan; David J Brenner; Guy Garty
Journal:  Radiat Res       Date:  2020-11-01       Impact factor: 3.372

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