Literature DB >> 28301774

Geometric Principles for Designing Highly Symmetric Self-Assembling Protein Nanomaterials.

Todd O Yeates1,2.   

Abstract

Emerging protein design strategies are enabling the creation of diverse, self-assembling supramolecular structures with precision on the atomic scale. The design possibilities include various types of architectures: finite cages or shells, essentially unbounded two-dimensional and three-dimensional arrays (i.e., crystals), and linear or tubular filaments. In nature, structures of those types are generally symmetric, and, accordingly, symmetry provides a powerful guide for developing new design approaches. Recent design studies have produced numerous protein assemblies in close agreement with geometric specifications. For certain design approaches, a complete list of allowable symmetry combinations that can be used for construction has been articulated, opening a path to a rich diversity of geometrically defined protein materials. Future challenges include improving and elaborating on current strategies and endowing designed protein nanomaterials with properties useful in nanomedicine and material science applications.

Keywords:  capsid; fusion; protein assembly; protein cage; protein design; symmetry

Mesh:

Substances:

Year:  2017        PMID: 28301774     DOI: 10.1146/annurev-biophys-070816-033928

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  23 in total

1.  A complete rule set for designing symmetry combination materials from protein molecules.

Authors:  Joshua Laniado; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-25       Impact factor: 11.205

2.  Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineering.

Authors:  Kevin A Cannon; Rachel U Park; Scott E Boyken; Una Nattermann; Sue Yi; David Baker; Neil P King; Todd O Yeates
Journal:  Protein Sci       Date:  2019-12-26       Impact factor: 6.725

Review 3.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

Review 4.  De novo protein design, a retrospective.

Authors:  Ivan V Korendovych; William F DeGrado
Journal:  Q Rev Biophys       Date:  2020-02-11       Impact factor: 5.318

5.  Engineering the entropy-driven free-energy landscape of a dynamic nanoporous protein assembly.

Authors:  Robert Alberstein; Yuta Suzuki; Francesco Paesani; F Akif Tezcan
Journal:  Nat Chem       Date:  2018-04-30       Impact factor: 24.427

6.  Protein assembles into Archimedean geometry.

Authors:  Todd O Yeates
Journal:  Nature       Date:  2019-05       Impact factor: 49.962

Review 7.  Protein-based antigen presentation platforms for nanoparticle vaccines.

Authors:  Brian Nguyen; Niraj H Tolia
Journal:  NPJ Vaccines       Date:  2021-05-13       Impact factor: 7.344

8.  Enzyme-Directed Functionalization of Designed, Two-Dimensional Protein Lattices.

Authors:  Rohit H Subramanian; Yuta Suzuki; Lorillee Tallorin; Swagat Sahu; Matthew Thompson; Nathan C Gianneschi; Michael D Burkart; F Akif Tezcan
Journal:  Biochemistry       Date:  2020-08-03       Impact factor: 3.162

9.  Design of metal-mediated protein assemblies via hydroxamic acid functionalities.

Authors:  Rohit H Subramanian; Jie Zhu; Jake B Bailey; Jerika A Chiong; Yiying Li; Eyal Golub; F Akif Tezcan
Journal:  Nat Protoc       Date:  2021-05-28       Impact factor: 13.491

10.  Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.

Authors:  Marc F Lensink; Guillaume Brysbaert; Nurul Nadzirin; Sameer Velankar; Raphaël A G Chaleil; Tereza Gerguri; Paul A Bates; Elodie Laine; Alessandra Carbone; Sergei Grudinin; Ren Kong; Ran-Ran Liu; Xi-Ming Xu; Hang Shi; Shan Chang; Miriam Eisenstein; Agnieszka Karczynska; Cezary Czaplewski; Emilia Lubecka; Agnieszka Lipska; Paweł Krupa; Magdalena Mozolewska; Łukasz Golon; Sergey Samsonov; Adam Liwo; Silvia Crivelli; Guillaume Pagès; Mikhail Karasikov; Maria Kadukova; Yumeng Yan; Sheng-You Huang; Mireia Rosell; Luis A Rodríguez-Lumbreras; Miguel Romero-Durana; Lucía Díaz-Bueno; Juan Fernandez-Recio; Charles Christoffer; Genki Terashi; Woong-Hee Shin; Tunde Aderinwale; Sai Raghavendra Maddhuri Venkata Subraman; Daisuke Kihara; Dima Kozakov; Sandor Vajda; Kathryn Porter; Dzmitry Padhorny; Israel Desta; Dmitri Beglov; Mikhail Ignatov; Sergey Kotelnikov; Iain H Moal; David W Ritchie; Isaure Chauvot de Beauchêne; Bernard Maigret; Marie-Dominique Devignes; Maria E Ruiz Echartea; Didier Barradas-Bautista; Zhen Cao; Luigi Cavallo; Romina Oliva; Yue Cao; Yang Shen; Minkyung Baek; Taeyong Park; Hyeonuk Woo; Chaok Seok; Merav Braitbard; Lirane Bitton; Dina Scheidman-Duhovny; Justas Dapkūnas; Kliment Olechnovič; Česlovas Venclovas; Petras J Kundrotas; Saveliy Belkin; Devlina Chakravarty; Varsha D Badal; Ilya A Vakser; Thom Vreven; Sweta Vangaveti; Tyler Borrman; Zhiping Weng; Johnathan D Guest; Ragul Gowthaman; Brian G Pierce; Xianjin Xu; Rui Duan; Liming Qiu; Jie Hou; Benjamin Ryan Merideth; Zhiwei Ma; Jianlin Cheng; Xiaoqin Zou; Panagiotis I Koukos; Jorge Roel-Touris; Francesco Ambrosetti; Cunliang Geng; Jörg Schaarschmidt; Mikael E Trellet; Adrien S J Melquiond; Li Xue; Brian Jiménez-García; Charlotte W van Noort; Rodrigo V Honorato; Alexandre M J J Bonvin; Shoshana J Wodak
Journal:  Proteins       Date:  2019-10-25
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.