Literature DB >> 28298556

Macrocycles as protein-protein interaction inhibitors.

Patrick G Dougherty1, Ziqing Qian1, Dehua Pei2.   

Abstract

Macrocyclic compounds such as cyclic peptides have emerged as a new and exciting class of drug candidates for inhibition of intracellular protein-protein interactions, which are challenging targets for conventional drug modalities (i.e. small molecules and proteins). Over the past decade, several complementary technologies have been developed to synthesize macrocycle libraries and screen them for binding to therapeutically relevant targets. Two different approaches have also been explored to increase the membrane permeability of cyclic peptides. In this review, we discuss these methods and their applications in the discovery of macrocyclic compounds against protein-protein interactions.
© 2017 The Author(s); published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  cell-penetrating peptide; cyclic peptide; drug discovery; macrocycle; protein–protein interaction; undruggable targets

Mesh:

Substances:

Year:  2017        PMID: 28298556      PMCID: PMC6511976          DOI: 10.1042/BCJ20160619

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  108 in total

1.  Production of cyclic peptides and proteins in vivo.

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

Review 2.  Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings.

Authors:  C A Lipinski; F Lombardo; B W Dominy; P J Feeney
Journal:  Adv Drug Deliv Rev       Date:  2001-03-01       Impact factor: 15.470

Review 3.  Target-oriented and diversity-oriented organic synthesis in drug discovery.

Authors:  S L Schreiber
Journal:  Science       Date:  2000-03-17       Impact factor: 47.728

4.  Convergent solutions to binding at a protein-protein interface.

Authors:  W L DeLano; M H Ultsch; A M de Vos; J A Wells
Journal:  Science       Date:  2000-02-18       Impact factor: 47.728

Review 5.  PDZ domains: structural modules for protein complex assembly.

Authors:  Albert Y Hung; Morgan Sheng
Journal:  J Biol Chem       Date:  2001-12-10       Impact factor: 5.157

6.  Rapid sequencing of library-derived peptides by partial edman degradation and mass spectrometry.

Authors:  P Wang; G Arabaci; D Pei
Journal:  J Comb Chem       Date:  2001 May-Jun

7.  Cell-penetrating peptides. A reevaluation of the mechanism of cellular uptake.

Authors:  Jean Philippe Richard; Kamran Melikov; Eric Vives; Corinne Ramos; Birgit Verbeure; Mike J Gait; Leonid V Chernomordik; Bernard Lebleu
Journal:  J Biol Chem       Date:  2002-10-30       Impact factor: 5.157

8.  Retrovirally delivered random cyclic Peptide libraries yield inhibitors of interleukin-4 signaling in human B cells.

Authors:  Todd M Kinsella; Cara T Ohashi; Amy Grace Harder; George C Yam; Weiqun Li; Beau Peelle; Erlina S Pali; Mark K Bennett; Susan M Molineaux; D A Anderson; Esteban S Masuda; Donald G Payan
Journal:  J Biol Chem       Date:  2002-07-11       Impact factor: 5.157

Review 9.  Small-molecule inhibitors of protein-protein interactions: progressing towards the dream.

Authors:  Michelle R Arkin; James A Wells
Journal:  Nat Rev Drug Discov       Date:  2004-04       Impact factor: 84.694

10.  Searching for DNA-protein interactions by lambda phage display.

Authors:  Carla Cicchini; Helenia Ansuini; Laura Amicone; Tonino Alonzi; Alfredo Nicosia; Riccardo Cortese; Marco Tripodi; Alessandra Luzzago
Journal:  J Mol Biol       Date:  2002-09-27       Impact factor: 5.469

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  43 in total

1.  Designing Cell-Permeable Macrocyclic Peptides.

Authors:  George Appiah Kubi; Patrick G Dougherty; Dehua Pei
Journal:  Methods Mol Biol       Date:  2019

Review 2.  Targeting Ras with Macromolecules.

Authors:  Dehua Pei; Kuangyu Chen; Hui Liao
Journal:  Cold Spring Harb Perspect Med       Date:  2018-03-01       Impact factor: 6.915

Review 3.  Inhibitors and chemical probes for molecular chaperone networks.

Authors:  Jason E Gestwicki; Hao Shao
Journal:  J Biol Chem       Date:  2018-09-13       Impact factor: 5.157

4.  Inhibiting Matrix Metalloproteinase-2 Activation by Perturbing Protein-Protein Interactions Using a Cyclic Peptide.

Authors:  Priyanka Sarkar; Zhonghan Li; Wendan Ren; Siwen Wang; Shiqun Shao; Jianan Sun; Xiaodong Ren; Nicole G Perkins; Zhili Guo; Chia-En A Chang; Jikui Song; Min Xue
Journal:  J Med Chem       Date:  2020-06-18       Impact factor: 7.446

5.  Macrocyclic peptide-based inhibition and imaging of hepatocyte growth factor.

Authors:  Toby Passioura; Hiroki Sato; Katsuya Sakai; Kenichiro Ito; Hiroki Furuhashi; Masataka Umitsu; Junichi Takagi; Yukinari Kato; Hidefumi Mukai; Shota Warashina; Maki Zouda; Yasuyoshi Watanabe; Seiji Yano; Mikihiro Shibata; Hiroaki Suga; Kunio Matsumoto
Journal:  Nat Chem Biol       Date:  2019-05-17       Impact factor: 15.040

Review 6.  Bicyclic Peptides as Next-Generation Therapeutics.

Authors:  Curran A Rhodes; Dehua Pei
Journal:  Chemistry       Date:  2017-07-27       Impact factor: 5.236

Review 7.  Overcoming Endosomal Entrapment in Drug Delivery.

Authors:  Dehua Pei; Marina Buyanova
Journal:  Bioconjug Chem       Date:  2018-12-19       Impact factor: 4.774

8.  Cell-Permeable Bicyclic Peptidyl Inhibitors against NEMO-IκB Kinase Interaction Directly from a Combinatorial Library.

Authors:  Curran A Rhodes; Patrick G Dougherty; Jahan K Cooper; Ziqing Qian; Steffen Lindert; Qi-En Wang; Dehua Pei
Journal:  J Am Chem Soc       Date:  2018-09-11       Impact factor: 15.419

9.  Generation of a cell-permeable cycloheptapeptidyl inhibitor against the peptidyl-prolyl isomerase Pin1.

Authors:  Walaa Bedewy; Hui Liao; Nageh A Abou-Taleb; Sherif F Hammad; Tamer Nasr; Dehua Pei
Journal:  Org Biomol Chem       Date:  2017-05-31       Impact factor: 3.876

Review 10.  Inhibitors of protein-protein interactions (PPIs): an analysis of scaffold choices and buried surface area.

Authors:  Xu Ran; Jason E Gestwicki
Journal:  Curr Opin Chem Biol       Date:  2018-06-13       Impact factor: 8.822

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