Literature DB >> 28296344

Genome-wide analysis identifies an african-specific variant in SEMA4D associated with body mass index.

Guanjie Chen1, Ayo P Doumatey1, Jie Zhou1, Lin Lei1, Amy R Bentley1, Fasil Tekola-Ayele1, Sally N Adebamowo1, Jennifer L Baker1, Olufemi Fasanmade2, Godfrey Okafor3, Benjamin Eghan4, Kofi Agyenim-Boateng4, Albert Amoah5, Clement Adebamowo6, Joseph Acheampong4, Thomas Johnson2, Johnnie Oli3, Daniel Shriner1, Adebowale A Adeyemo1, Charles N Rotimi1.   

Abstract

OBJECTIVE: The prevalence of obesity varies between ethnic groups. No genome-wide association study (GWAS) for body mass index (BMI) has been conducted in continental Africans.
METHODS: We performed a GWAS for BMI in 1,570 West Africans (WA). Replication was conducted in independent samples of WA (n = 1,411) and African Americans (AA) (n = 9,020).
RESULTS: We identified a novel genome-wide significant African-specific locus for BMI (SEMA4D, rs80068415; minor allele frequency = 0.008, P = 2.10 × 10-8 ). This finding was replicated in independent samples of WA (P = 0.013) and AA (P = 0.017). Individuals with obesity had higher serum SEMA4D levels compared to those without obesity (P < 0.0001), and elevated levels of serum SEMA4D were associated with increased obesity risk (OR = 4.2, P < 1 × 10-4 ). The prevalence of obesity was higher in individuals with the CT versus TT genotypes (55.6% vs. 22.9%).
CONCLUSIONS: A novel variant in SEMA4D was significantly associated with BMI. Carriers of the C allele were 4.6 BMI units heavier than carriers of the T allele (P = 0.0007). This variant is monomorphic in Europeans and Asians, highlighting the importance of studying diverse populations. While there is evidence for the involvement of SEMA4D in inflammatory processes, this study is the first to implicate SEMA4D in obesity pathophysiology.
© 2017 The Obesity Society.

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Year:  2017        PMID: 28296344      PMCID: PMC5373947          DOI: 10.1002/oby.21804

Source DB:  PubMed          Journal:  Obesity (Silver Spring)        ISSN: 1930-7381            Impact factor:   5.002


  27 in total

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6.  HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants.

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8.  A genome-wide association study of hypertension and blood pressure in African Americans.

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Authors:  Keri L Monda; Gary K Chen; Kira C Taylor; Cameron Palmer; Todd L Edwards; Leslie A Lange; Maggie C Y Ng; Adebowale A Adeyemo; Matthew A Allison; Lawrence F Bielak; Guanjie Chen; Mariaelisa Graff; Marguerite R Irvin; Suhn K Rhie; Guo Li; Yongmei Liu; Youfang Liu; Yingchang Lu; Michael A Nalls; Yan V Sun; Mary K Wojczynski; Lisa R Yanek; Melinda C Aldrich; Adeyinka Ademola; Christopher I Amos; Elisa V Bandera; Cathryn H Bock; Angela Britton; Ulrich Broeckel; Quiyin Cai; Neil E Caporaso; Chris S Carlson; John Carpten; Graham Casey; Wei-Min Chen; Fang Chen; Yii-Der I Chen; Charleston W K Chiang; Gerhard A Coetzee; Ellen Demerath; Sandra L Deming-Halverson; Ryan W Driver; Patricia Dubbert; Mary F Feitosa; Ye Feng; Barry I Freedman; Elizabeth M Gillanders; Omri Gottesman; Xiuqing Guo; Talin Haritunians; Tamara Harris; Curtis C Harris; Anselm J M Hennis; Dena G Hernandez; Lorna H McNeill; Timothy D Howard; Barbara V Howard; Virginia J Howard; Karen C Johnson; Sun J Kang; Brendan J Keating; Suzanne Kolb; Lewis H Kuller; Abdullah Kutlar; Carl D Langefeld; Guillaume Lettre; Kurt Lohman; Vaneet Lotay; Helen Lyon; Joann E Manson; William Maixner; Yan A Meng; Kristine R Monroe; Imran Morhason-Bello; Adam B Murphy; Josyf C Mychaleckyj; Rajiv Nadukuru; Katherine L Nathanson; Uma Nayak; Amidou N'diaye; Barbara Nemesure; Suh-Yuh Wu; M Cristina Leske; Christine Neslund-Dudas; Marian Neuhouser; Sarah Nyante; Heather Ochs-Balcom; Adesola Ogunniyi; Temidayo O Ogundiran; Oladosu Ojengbede; Olufunmilayo I Olopade; Julie R Palmer; Edward A Ruiz-Narvaez; Nicholette D Palmer; Michael F Press; Evandine Rampersaud; Laura J Rasmussen-Torvik; Jorge L Rodriguez-Gil; Babatunde Salako; Eric E Schadt; Ann G Schwartz; Daniel A Shriner; David Siscovick; Shad B Smith; Sylvia Wassertheil-Smoller; Elizabeth K Speliotes; Margaret R Spitz; Lara Sucheston; Herman Taylor; Bamidele O Tayo; Margaret A Tucker; David J Van Den Berg; Digna R Velez Edwards; Zhaoming Wang; John K Wiencke; Thomas W Winkler; John S Witte; Margaret Wrensch; Xifeng Wu; James J Yang; Albert M Levin; Taylor R Young; Neil A Zakai; Mary Cushman; Krista A Zanetti; Jing Hua Zhao; Wei Zhao; Yonglan Zheng; Jie Zhou; Regina G Ziegler; Joseph M Zmuda; Jyotika K Fernandes; Gary S Gilkeson; Diane L Kamen; Kelly J Hunt; Ida J Spruill; Christine B Ambrosone; Stefan Ambs; Donna K Arnett; Larry Atwood; Diane M Becker; Sonja I Berndt; Leslie Bernstein; William J Blot; Ingrid B Borecki; Erwin P Bottinger; Donald W Bowden; Gregory Burke; Stephen J Chanock; Richard S Cooper; Jingzhong Ding; David Duggan; Michele K Evans; Caroline Fox; W Timothy Garvey; Jonathan P Bradfield; Hakon Hakonarson; Struan F A Grant; Ann Hsing; Lisa Chu; Jennifer J Hu; Dezheng Huo; Sue A Ingles; Esther M John; Joanne M Jordan; Edmond K Kabagambe; Sharon L R Kardia; Rick A Kittles; Phyllis J Goodman; Eric A Klein; Laurence N Kolonel; Loic Le Marchand; Simin Liu; Barbara McKnight; Robert C Millikan; Thomas H Mosley; Badri Padhukasahasram; L Keoki Williams; Sanjay R Patel; Ulrike Peters; Curtis A Pettaway; Patricia A Peyser; Bruce M Psaty; Susan Redline; Charles N Rotimi; Benjamin A Rybicki; Michèle M Sale; Pamela J Schreiner; Lisa B Signorello; Andrew B Singleton; Janet L Stanford; Sara S Strom; Michael J Thun; Mara Vitolins; Wei Zheng; Jason H Moore; Scott M Williams; Shamika Ketkar; Xiaofeng Zhu; Alan B Zonderman; Charles Kooperberg; George J Papanicolaou; Brian E Henderson; Alex P Reiner; Joel N Hirschhorn; Ruth J F Loos; Kari E North; Christopher A Haiman
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  18 in total

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2.  Insulin Resistance and Metabolic Syndrome: Clinical and Laboratory Associations in African Americans Without Diabetes in the Hemochromatosis and Iron Overload Screening Study.

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Review 6.  The genomic landscape of African populations in health and disease.

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Review 8.  Racial Disparities in Obesity Treatment.

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