Literature DB >> 28289222

Fossil and genomic evidence constrains the timing of bison arrival in North America.

Duane Froese1, Mathias Stiller2,3, Peter D Heintzman2, Alberto V Reyes4, Grant D Zazula5, André E R Soares2, Matthias Meyer6, Elizabeth Hall5, Britta J L Jensen4,7, Lee J Arnold8, Ross D E MacPhee9, Beth Shapiro10,11.   

Abstract

The arrival of bison in North America marks one of the most successful large-mammal dispersals from Asia within the last million years, yet the timing and nature of this event remain poorly determined. Here, we used a combined paleontological and paleogenomic approach to provide a robust timeline for the entry and subsequent evolution of bison within North America. We characterized two fossil-rich localities in Canada's Yukon and identified the oldest well-constrained bison fossil in North America, a 130,000-y-old steppe bison, Bison cf. priscus We extracted and sequenced mitochondrial genomes from both this bison and from the remains of a recently discovered, ∼120,000-y-old giant long-horned bison, Bison latifrons, from Snowmass, Colorado. We analyzed these and 44 other bison mitogenomes with ages that span the Late Pleistocene, and identified two waves of bison dispersal into North America from Asia, the earliest of which occurred ∼195-135 thousand y ago and preceded the morphological diversification of North American bison, and the second of which occurred during the Late Pleistocene, ∼45-21 thousand y ago. This chronological arc establishes that bison first entered North America during the sea level lowstand accompanying marine isotope stage 6, rejecting earlier records of bison in North America. After their invasion, bison rapidly colonized North America during the last interglaciation, spreading from Alaska through continental North America; they have been continuously resident since then.

Entities:  

Keywords:  Beringia; Bison latifrons; Bison priscus; Rancholabrean; paleogenomics; steppe bison

Mesh:

Substances:

Year:  2017        PMID: 28289222      PMCID: PMC5380047          DOI: 10.1073/pnas.1620754114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Illumina sequencing library preparation for highly multiplexed target capture and sequencing.

Authors:  Matthias Meyer; Martin Kircher
Journal:  Cold Spring Harb Protoc       Date:  2010-06

2.  Rise and fall of the Beringian steppe bison.

Authors:  Beth Shapiro; Alexei J Drummond; Andrew Rambaut; Michael C Wilson; Paul E Matheus; Andrei V Sher; Oliver G Pybus; M Thomas P Gilbert; Ian Barnes; Jonas Binladen; Eske Willerslev; Anders J Hansen; Gennady F Baryshnikov; James A Burns; Sergei Davydov; Jonathan C Driver; Duane G Froese; C Richard Harington; Grant Keddie; Pavel Kosintsev; Michael L Kunz; Larry D Martin; Robert O Stephenson; John Storer; Richard Tedford; Sergei Zimov; Alan Cooper
Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

3.  Mitochondrial genomes of extinct aurochs survive in domestic cattle.

Authors:  Alessandro Achilli; Anna Olivieri; Marco Pellecchia; Cristina Uboldi; Licia Colli; Nadia Al-Zahery; Matteo Accetturo; Maria Pala; Baharak Hooshiar Kashani; Ugo A Perego; Vincenza Battaglia; Simona Fornarino; Javad Kalamati; Massoud Houshmand; Riccardo Negrini; Ornella Semino; Martin Richards; Vincent Macaulay; Luca Ferretti; Hans-Jürgen Bandelt; Paolo Ajmone-Marsan; Antonio Torroni
Journal:  Curr Biol       Date:  2008-02-26       Impact factor: 10.834

4.  Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Authors:  Ludovic Orlando; Aurélien Ginolhac; Guojie Zhang; Duane Froese; Anders Albrechtsen; Mathias Stiller; Mikkel Schubert; Enrico Cappellini; Bent Petersen; Ida Moltke; Philip L F Johnson; Matteo Fumagalli; Julia T Vilstrup; Maanasa Raghavan; Thorfinn Korneliussen; Anna-Sapfo Malaspinas; Josef Vogt; Damian Szklarczyk; Christian D Kelstrup; Jakob Vinther; Andrei Dolocan; Jesper Stenderup; Amhed M V Velazquez; James Cahill; Morten Rasmussen; Xiaoli Wang; Jiumeng Min; Grant D Zazula; Andaine Seguin-Orlando; Cecilie Mortensen; Kim Magnussen; John F Thompson; Jacobo Weinstock; Kristian Gregersen; Knut H Røed; Véra Eisenmann; Carl J Rubin; Donald C Miller; Douglas F Antczak; Mads F Bertelsen; Søren Brunak; Khaled A S Al-Rasheid; Oliver Ryder; Leif Andersson; John Mundy; Anders Krogh; M Thomas P Gilbert; Kurt Kjær; Thomas Sicheritz-Ponten; Lars Juhl Jensen; Jesper V Olsen; Michael Hofreiter; Rasmus Nielsen; Beth Shapiro; Jun Wang; Eske Willerslev
Journal:  Nature       Date:  2013-06-26       Impact factor: 49.962

5.  Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA.

Authors:  Marie-Theres Gansauge; Matthias Meyer
Journal:  Nat Protoc       Date:  2013-03-14       Impact factor: 13.491

6.  Multiplexed DNA sequence capture of mitochondrial genomes using PCR products.

Authors:  Tomislav Maricic; Mark Whitten; Svante Pääbo
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

7.  Maternal and paternal lineages in cross-breeding bovine species. Has wisent a hybrid origin?

Authors:  Edward L C Verkaar; Isaäc J Nijman; Maurice Beeke; Eline Hanekamp; Johannes A Lenstra
Journal:  Mol Biol Evol       Date:  2004-01-22       Impact factor: 16.240

8.  Evolution and dispersal of mammoths across the Northern Hemisphere.

Authors:  A M Lister; A V Sher
Journal:  Science       Date:  2015-11-13       Impact factor: 47.728

9.  Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci.

Authors:  Mandev S Gill; Philippe Lemey; Nuno R Faria; Andrew Rambaut; Beth Shapiro; Marc A Suchard
Journal:  Mol Biol Evol       Date:  2012-11-22       Impact factor: 16.240

10.  mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters.

Authors:  Hákon Jónsson; Aurélien Ginolhac; Mikkel Schubert; Philip L F Johnson; Ludovic Orlando
Journal:  Bioinformatics       Date:  2013-04-23       Impact factor: 6.937

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  15 in total

1.  Overkill, glacial history, and the extinction of North America's Ice Age megafauna.

Authors:  David J Meltzer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-09       Impact factor: 11.205

2.  Late Pleistocene shrub expansion preceded megafauna turnover and extinctions in eastern Beringia.

Authors:  Alistair J Monteath; Benjamin V Gaglioti; Mary E Edwards; Duane Froese
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-28       Impact factor: 12.779

3.  A new genus of horse from Pleistocene North America.

Authors:  Peter D Heintzman; Grant D Zazula; Ross DE MacPhee; Eric Scott; James A Cahill; Brianna K McHorse; Joshua D Kapp; Mathias Stiller; Matthew J Wooller; Ludovic Orlando; John Southon; Duane G Froese; Beth Shapiro
Journal:  Elife       Date:  2017-11-28       Impact factor: 8.140

4.  Population reconstructions for humans and megafauna suggest mixed causes for North American Pleistocene extinctions.

Authors:  Jack M Broughton; Elic M Weitzel
Journal:  Nat Commun       Date:  2018-12-21       Impact factor: 14.919

5.  Characterization of the complete mitochondrial genome of the Meiren yak (Bos grunniens).

Authors:  Xian Guo; Xiaoyun Wu; Pengjia Bao; Zhen Yang; Zhi Dang; Kelei He; Xiaoli Yang; Shengguang Shi; Jie Pei; Chunnian Liang
Journal:  Mitochondrial DNA B Resour       Date:  2020-02-11       Impact factor: 0.658

6.  Characterization of the complete mitochondrial genome of the Tianjun yak (Bos grunniens).

Authors:  Xian Guo; Xiaoyun Wu; Pengjia Bao; Suonan Zhao; Jinshou Ma; Shenbujia Yang; Min Chu; Xuezhi Ding; Xixi Yao; Chunnian Liang; Jie Pei; Ping Yan
Journal:  Mitochondrial DNA B Resour       Date:  2019-11-20       Impact factor: 0.658

7.  Bison body size and climate change.

Authors:  Jeff M Martin; Jim I Mead; Perry S Barboza
Journal:  Ecol Evol       Date:  2018-04-10       Impact factor: 2.912

8.  Isotopic paleoecology of Northern Great Plains bison during the Holocene.

Authors:  Gaimi Davies; Blake McCann; Jay Sturdevant; Fern Swenson; Igor V Ovchinnikov
Journal:  Sci Rep       Date:  2019-11-12       Impact factor: 4.379

9.  Puma genomes from North and South America provide insights into the genomic consequences of inbreeding.

Authors:  Nedda F Saremi; Megan A Supple; Ashley Byrne; James A Cahill; Luiz Lehmann Coutinho; Love Dalén; Henrique V Figueiró; Warren E Johnson; Heather J Milne; Stephen J O'Brien; Brendan O'Connell; David P Onorato; Seth P D Riley; Jeff A Sikich; Daniel R Stahler; Priscilla Marqui Schmidt Villela; Christopher Vollmers; Robert K Wayne; Eduardo Eizirik; Russell B Corbett-Detig; Richard E Green; Christopher C Wilmers; Beth Shapiro
Journal:  Nat Commun       Date:  2019-10-18       Impact factor: 14.919

10.  AuthentiCT: a model of ancient DNA damage to estimate the proportion of present-day DNA contamination.

Authors:  Stéphane Peyrégne; Benjamin M Peter
Journal:  Genome Biol       Date:  2020-09-15       Impact factor: 13.583

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