Literature DB >> 28288336

Breaking the silence: new strategies for discovering novel natural products.

Hengqian Ren1, Bin Wang2, Huimin Zhao3.   

Abstract

Natural products have been a prolific source of antibacterial and anticancer drugs for decades. One of the major challenges in natural product discovery is that the vast majority of natural product biosynthetic gene clusters (BGCs) have not been characterized, partially due to the fact that they are either transcriptionally silent or expressed at very low levels under standard laboratory conditions. Here we describe the strategies developed in recent years (mostly between 2014-2016) for activating silent BGCs. These strategies can be broadly divided into two categories: approaches in native hosts and approaches in heterologous hosts. In addition, we briefly discuss recent advances in developing new computational tools for identification and characterization of BGCs and high-throughput methods for detection of natural products.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28288336      PMCID: PMC5592118          DOI: 10.1016/j.copbio.2017.02.008

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  58 in total

Review 1.  From single to multiple microcoil flow probe NMR and related capillary techniques: a review.

Authors:  Ozan Gökay; Klaus Albert
Journal:  Anal Bioanal Chem       Date:  2011-10-04       Impact factor: 4.142

Review 2.  Natural Products as Sources of New Drugs from 1981 to 2014.

Authors:  David J Newman; Gordon M Cragg
Journal:  J Nat Prod       Date:  2016-02-07       Impact factor: 4.050

Review 3.  Targeting virulence: a new paradigm for antimicrobial therapy.

Authors:  Anne E Clatworthy; Emily Pierson; Deborah T Hung
Journal:  Nat Chem Biol       Date:  2007-09       Impact factor: 15.040

4.  MS/MS networking guided analysis of molecule and gene cluster families.

Authors:  Don Duy Nguyen; Cheng-Hsuan Wu; Wilna J Moree; Anne Lamsa; Marnix H Medema; Xiling Zhao; Ronnie G Gavilan; Marystella Aparicio; Librada Atencio; Chanaye Jackson; Javier Ballesteros; Joel Sanchez; Jeramie D Watrous; Vanessa V Phelan; Corine van de Wiel; Roland D Kersten; Samina Mehnaz; René De Mot; Elizabeth A Shank; Pep Charusanti; Harish Nagarajan; Brendan M Duggan; Bradley S Moore; Nuno Bandeira; Bernhard Ø Palsson; Kit Pogliano; Marcelino Gutiérrez; Pieter C Dorrestein
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

5.  Genome mining-directed activation of a silent angucycline biosynthetic gene cluster in Streptomyces chattanoogensis.

Authors:  Zhenxing Zhou; Qingqing Xu; Qingting Bu; Yuanyang Guo; Shuiping Liu; Yu Liu; Yiling Du; Yongquan Li
Journal:  Chembiochem       Date:  2014-12-15       Impact factor: 3.164

6.  Specific cloning of human DNA as yeast artificial chromosomes by transformation-associated recombination.

Authors:  V Larionov; N Kouprina; J Graves; X N Chen; J R Korenberg; M A Resnick
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

7.  Targeted activation of silent natural product biosynthesis pathways by reporter-guided mutant selection.

Authors:  Fang Guo; Sihai Xiang; Liyuan Li; Bin Wang; Johanna Rajasärkkä; Kirsi Gröndahl-Yli-Hannuksela; Guomin Ai; Mikko Metsä-Ketelä; Keqian Yang
Journal:  Metab Eng       Date:  2014-12-29       Impact factor: 9.783

8.  Selective isolation of genomic loci from complex genomes by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae.

Authors:  Natalay Kouprina; Vladimir Larionov
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

Review 9.  Discovery of microbial natural products by activation of silent biosynthetic gene clusters.

Authors:  Peter J Rutledge; Gregory L Challis
Journal:  Nat Rev Microbiol       Date:  2015-06-29       Impact factor: 60.633

10.  Cas9-Assisted Targeting of CHromosome segments CATCH enables one-step targeted cloning of large gene clusters.

Authors:  Wenjun Jiang; Xuejin Zhao; Tslil Gabrieli; Chunbo Lou; Yuval Ebenstein; Ting F Zhu
Journal:  Nat Commun       Date:  2015-09-01       Impact factor: 14.919

View more
  35 in total

Review 1.  Advances in microbial culturing conditions to activate silent biosynthetic gene clusters for novel metabolite production.

Authors:  Hailey A Tomm; Lorena Ucciferri; Avena C Ross
Journal:  J Ind Microbiol Biotechnol       Date:  2019-06-08       Impact factor: 3.346

Review 2.  Leveraging synthetic biology for producing bioactive polyketides and non-ribosomal peptides in bacterial heterologous hosts.

Authors:  Taylor B Cook; Brian F Pfleger
Journal:  Medchemcomm       Date:  2019-04-25       Impact factor: 3.597

Review 3.  Deep learning approaches for natural product discovery from plant endophytic microbiomes.

Authors:  Shiva Abdollahi Aghdam; Amanda May Vivian Brown
Journal:  Environ Microbiome       Date:  2021-03-18

4.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

5.  Complete Genome Sequence of Streptomyces olivoreticuli ATCC 31159 Which can Produce Anticancer Bestatin and Show Diverse Secondary Metabolic Potentials.

Authors:  Hong Yu Zhang; Ze Ping Xie; Ting Ting Lou; Su Ying Wang
Journal:  Curr Microbiol       Date:  2019-01-31       Impact factor: 2.188

6.  Unlocking Cryptic Metabolites with Mass Spectrometry-Guided Transposon Mutant Selection.

Authors:  Aya Yoshimura; Brett C Covington; Étienne Gallant; Chen Zhang; Anran Li; Mohammad R Seyedsayamdost
Journal:  ACS Chem Biol       Date:  2020-09-14       Impact factor: 5.100

7.  Cebulantin, a Cryptic Lanthipeptide Antibiotic Uncovered Using Bioactivity-Coupled HiTES.

Authors:  Kyuho Moon; Fei Xu; Mohammad R Seyedsayamdost
Journal:  Angew Chem Int Ed Engl       Date:  2019-03-28       Impact factor: 15.336

Review 8.  Genome Mining as New Challenge in Natural Products Discovery.

Authors:  Luisa Albarano; Roberta Esposito; Nadia Ruocco; Maria Costantini
Journal:  Mar Drugs       Date:  2020-04-09       Impact factor: 5.118

9.  An integrated workflow for phenazine-modifying enzyme characterization.

Authors:  R Cameron Coates; Benjamin P Bowen; Ernst Oberortner; Linda Thomashow; Michalis Hadjithomas; Zhiying Zhao; Jing Ke; Leslie Silva; Katherine Louie; Gaoyan Wang; David Robinson; Angela Tarver; Matthew Hamilton; Andrea Lubbe; Meghan Feltcher; Jeffery L Dangl; Amrita Pati; David Weller; Trent R Northen; Jan-Fang Cheng; Nigel J Mouncey; Samuel Deutsch; Yasuo Yoshikuni
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-15       Impact factor: 3.346

10.  Toward a global picture of bacterial secondary metabolism.

Authors:  Mohammad R Seyedsayamdost
Journal:  J Ind Microbiol Biotechnol       Date:  2019-01-25       Impact factor: 3.346

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.