Literature DB >> 28288117

Single-molecule electrometry.

Francesca Ruggeri1, Franziska Zosel2, Natalie Mutter2, Mirosława Różycka3, Magdalena Wojtas2,3, Andrzej Ożyhar3, Benjamin Schuler2,4, Madhavi Krishnan1,4.   

Abstract

Mass and electrical charge are fundamental properties of biological macromolecules. Although molecular mass has long been determined with atomic precision, a direct and precise determination of molecular charge remains an outstanding challenge. Here we report high-precision (<1e) measurements of the electrical charge of molecules such as nucleic acids, and globular and disordered proteins in solution. The measurement is based on parallel external field-free trapping of single macromolecules, permits the estimation of a dielectric coefficient of the molecular interior and can be performed in real time. Further, we demonstrate the direct detection of single amino acid substitution and chemical modifications in proteins. As the electrical charge of a macromolecule strongly depends on its three-dimensional conformation, this kind of high-precision electrometry offers an approach to probe the structure, fluctuations and interactions of a single molecule in solution.

Entities:  

Year:  2017        PMID: 28288117     DOI: 10.1038/nnano.2017.26

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  27 in total

1.  Geometry-induced electrostatic trapping of nanometric objects in a fluid.

Authors:  Madhavi Krishnan; Nassiredin Mojarad; Philipp Kukura; Vahid Sandoghdar
Journal:  Nature       Date:  2010-10-07       Impact factor: 49.962

Review 2.  The role of mass spectrometry in structure elucidation of dynamic protein complexes.

Authors:  Michal Sharon; Carol V Robinson
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

3.  Supercharging proteins can impart unusual resilience.

Authors:  Michael S Lawrence; Kevin J Phillips; David R Liu
Journal:  J Am Chem Soc       Date:  2007-08-01       Impact factor: 15.419

4.  Prothymosin alpha: a biologically active protein with random coil conformation.

Authors:  K Gast; H Damaschun; K Eckert; K Schulze-Forster; H R Maurer; M Müller-Frohne; D Zirwer; J Czarnecki; G Damaschun
Journal:  Biochemistry       Date:  1995-10-10       Impact factor: 3.162

5.  Folding of an intrinsically disordered protein by phosphorylation as a regulatory switch.

Authors:  Alaji Bah; Robert M Vernon; Zeba Siddiqui; Mickaël Krzeminski; Ranjith Muhandiram; Charlie Zhao; Nahum Sonenberg; Lewis E Kay; Julie D Forman-Kay
Journal:  Nature       Date:  2014-12-22       Impact factor: 49.962

6.  Electrostatic free energy for a confined nanoscale object in a fluid.

Authors:  Madhavi Krishnan
Journal:  J Chem Phys       Date:  2013-03-21       Impact factor: 3.488

7.  Large shifts in pKa values of lysine residues buried inside a protein.

Authors:  Daniel G Isom; Carlos A Castañeda; Brian R Cannon; Bertrand García-Moreno
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-09       Impact factor: 11.205

Review 8.  Post-translational modification of p53 in tumorigenesis.

Authors:  Ann M Bode; Zigang Dong
Journal:  Nat Rev Cancer       Date:  2004-10       Impact factor: 60.716

Review 9.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

10.  Label-free, all-optical detection, imaging, and tracking of a single protein.

Authors:  J Ortega Arroyo; J Andrecka; K M Spillane; N Billington; Y Takagi; J R Sellers; P Kukura
Journal:  Nano Lett       Date:  2014-03-21       Impact factor: 11.189

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  13 in total

1.  Micro-scale technologies propel biology and medicine.

Authors:  Iago Pereiro; Julien Aubert; Govind V Kaigala
Journal:  Biomicrofluidics       Date:  2021-04-27       Impact factor: 2.800

2.  Quantifying charge state heterogeneity for proteins with multiple ionizable residues.

Authors:  Martin J Fossat; Ammon E Posey; Rohit V Pappu
Journal:  Biophys J       Date:  2021-11-23       Impact factor: 4.033

3.  Metabolic Profiling of Amino Acids Associated with Mortality in Patients with Acute Paraquat Poisoning.

Authors:  Xiuxian Wan; Chunyu Zhou; Xin Kang; Dayong Hu; Wen Xue; Xinhua Li; Hui Bao; Ai Peng
Journal:  Med Sci Monit       Date:  2018-03-07

4.  Disordered RNA chaperones can enhance nucleic acid folding via local charge screening.

Authors:  Erik D Holmstrom; Zhaowei Liu; Daniel Nettels; Robert B Best; Benjamin Schuler
Journal:  Nat Commun       Date:  2019-06-05       Impact factor: 14.919

5.  Scalable integration of nano-, and microfluidics with hybrid two-photon lithography.

Authors:  Oliver Vanderpoorten; Quentin Peter; Pavan K Challa; Ulrich F Keyser; Jeremy Baumberg; Clemens F Kaminski; Tuomas P J Knowles
Journal:  Microsyst Nanoeng       Date:  2019-09-09       Impact factor: 7.127

6.  RNA-Induced Conformational Switching and Clustering of G3BP Drive Stress Granule Assembly by Condensation.

Authors:  Jordina Guillén-Boixet; Andrii Kopach; Alex S Holehouse; Sina Wittmann; Marcus Jahnel; Raimund Schlüßler; Kyoohyun Kim; Irmela R E A Trussina; Jie Wang; Daniel Mateju; Ina Poser; Shovamayee Maharana; Martine Ruer-Gruß; Doris Richter; Xiaojie Zhang; Young-Tae Chang; Jochen Guck; Alf Honigmann; Julia Mahamid; Anthony A Hyman; Rohit V Pappu; Simon Alberti; Titus M Franzmann
Journal:  Cell       Date:  2020-04-16       Impact factor: 41.582

Review 7.  Integrating single-molecule FRET and biomolecular simulations to study diverse interactions between nucleic acids and proteins.

Authors:  Joshua C Sanders; Erik D Holmstrom
Journal:  Essays Biochem       Date:  2021-04-16       Impact factor: 8.000

8.  Simultaneous Imaging of Single Protein Size, Charge, and Binding Using A Protein Oscillation Approach.

Authors:  Guangzhong Ma; Zijian Wan; Shaopeng Wang
Journal:  Bio Protoc       Date:  2021-03-05

9.  A simple model for electrical charge in globular macromolecules and linear polyelectrolytes in solution.

Authors:  M Krishnan
Journal:  J Chem Phys       Date:  2017-05-28       Impact factor: 3.488

10.  Confinement-Free Wide-Field Ratiometric Tracking of Single Fluorescent Molecules.

Authors:  Barak Gilboa; Bo Jing; Tao J Cui; Maabur Sow; Anne Plochowietz; Abhishek Mazumder; Achillefs N Kapanidis
Journal:  Biophys J       Date:  2019-10-31       Impact factor: 4.033

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