Literature DB >> 28286002

A Fast and Effective Microfluidic Spraying-Plunging Method for High-Resolution Single-Particle Cryo-EM.

Xiangsong Feng1, Ziao Fu2, Sandip Kaledhonkar3, Yuan Jia4, Binita Shah5, Amy Jin3, Zheng Liu3, Ming Sun6, Bo Chen6, Robert A Grassucci7, Yukun Ren8, Hongyuan Jiang8, Joachim Frank9, Qiao Lin10.   

Abstract

We describe a spraying-plunging method for preparing cryoelectron microscopy (cryo-EM) grids with vitreous ice of controllable, highly consistent thickness using a microfluidic device. The new polydimethylsiloxane (PDMS)-based sprayer was tested with apoferritin. We demonstrate that the structure can be solved to high resolution with this method of sample preparation. Besides replacing the conventional pipetting-blotting-plunging method, one of many potential applications of the new sprayer is in time-resolved cryo-EM, as part of a PDMS-based microfluidic reaction channel to study short-lived intermediates on the timescale of 10-1,000 ms. Published by Elsevier Ltd.

Entities:  

Keywords:  EM grid preparation; PDMS-based microsprayer; apoferritin; ice thickness; time-resolved cryo-EM

Mesh:

Substances:

Year:  2017        PMID: 28286002      PMCID: PMC5382802          DOI: 10.1016/j.str.2017.02.005

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  44 in total

1.  A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray.

Authors:  H D White; K Thirumurugan; M L Walker; J Trinick
Journal:  J Struct Biol       Date:  2003 Oct-Nov       Impact factor: 2.867

Review 2.  Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule.

Authors:  Bo Chen; Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-10-31       Impact factor: 1.571

3.  A computer-controlled spraying-freezing apparatus for millisecond time-resolution electron cryomicroscopy.

Authors:  H D White; M L Walker; J Trinick
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867

4.  Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.

Authors:  Fei Guo; Zheng Liu; Ping-An Fang; Qinfen Zhang; Elena T Wright; Weimin Wu; Ci Zhang; Frank Vago; Yue Ren; Joanita Jakana; Wah Chiu; Philip Serwer; Wen Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

5.  Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM.

Authors:  Tanvir R Shaikh; Aymen S Yassin; Zonghuan Lu; David Barnard; Xing Meng; Toh-Ming Lu; Terence Wagenknecht; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

6.  Acetylcholine receptor channel imaged in the open state.

Authors:  N Unwin
Journal:  Nature       Date:  1995-01-05       Impact factor: 49.962

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

Authors:  Alexis Rohou; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2015-08-13       Impact factor: 2.867

9.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

10.  Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G.

Authors:  Wen Li; Zheng Liu; Ravi Kiran Koripella; Robert Langlois; Suparna Sanyal; Joachim Frank
Journal:  Sci Adv       Date:  2015-05-01       Impact factor: 14.136

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  41 in total

Review 1.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

Review 2.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

3.  Routine single particle CryoEM sample and grid characterization by tomography.

Authors:  Venkata P Dandey; Hui Wei; Alex J Noble; Julia Brasch; Jillian Chase; Priyamvada Acharya; Yong Zi Tan; Zhening Zhang; Laura Y Kim; Giovanna Scapin; Micah Rapp; Edward T Eng; William J Rice; Anchi Cheng; Carl J Negro; Lawrence Shapiro; Peter D Kwong; David Jeruzalmi; Amedee des Georges; Clinton S Potter; Bridget Carragher
Journal:  Elife       Date:  2018-05-29       Impact factor: 8.140

4.  Spotiton: New features and applications.

Authors:  Venkata P Dandey; Hui Wei; Zhening Zhang; Yong Zi Tan; Priyamvada Acharya; Edward T Eng; William J Rice; Peter A Kahn; Clinton S Potter; Bridget Carragher
Journal:  J Struct Biol       Date:  2018-05       Impact factor: 2.867

Review 5.  Never at rest: insights into the conformational dynamics of ion channels from cryo-electron microscopy.

Authors:  Carus Lau; Mark J Hunter; Alastair Stewart; Eduardo Perozo; Jamie I Vandenberg
Journal:  J Physiol       Date:  2018-03-05       Impact factor: 5.182

6.  Electrophoretic exclusion microscale sample preparation for cryo-EM structural determination of proteins.

Authors:  Fanyi Zhu; Brent L Nannenga; Mark A Hayes
Journal:  Biomicrofluidics       Date:  2019-10-28       Impact factor: 2.800

7.  Visualizing the functional 3D shape and topography of long noncoding RNAs by single-particle atomic force microscopy and in-solution hydrodynamic techniques.

Authors:  Tina Uroda; Isabel Chillón; Paolo Annibale; Jean-Marie Teulon; Ombeline Pessey; Manikandan Karuppasamy; Jean-Luc Pellequer; Marco Marcia
Journal:  Nat Protoc       Date:  2020-05-25       Impact factor: 13.491

8.  Microscale Fluid Behavior during Cryo-EM Sample Blotting.

Authors:  Maxim Armstrong; Bong-Gyoon Han; Salvador Gomez; John Turner; Daniel A Fletcher; Robert M Glaeser
Journal:  Biophys J       Date:  2019-12-25       Impact factor: 4.033

9.  Routine determination of ice thickness for cryo-EM grids.

Authors:  William J Rice; Anchi Cheng; Alex J Noble; Edward T Eng; Laura Y Kim; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2018-07-04       Impact factor: 2.867

Review 10.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

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