Literature DB >> 28280520

LINKING LUNG AIRWAY STRUCTURE TO PULMONARY FUNCTION VIA COMPOSITE BRIDGE REGRESSION.

Kun Chen1, Eric A Hoffman2, Indu Seetharaman3, Feiran Jiao2, Ching-Long Lin2, Kung-Sik Chan2.   

Abstract

The human lung airway is a complex inverted tree-like structure. Detailed airway measurements can be extracted from MDCT-scanned lung images, such as segmental wall thickness, airway diameter, parent-child branch angles, etc. The wealth of lung airway data provides a unique opportunity for advancing our understanding of the fundamental structure-function relationships within the lung. An important problem is to construct and identify important lung airway features in normal subjects and connect these to standardized pulmonary function test results such as FEV1%. Among other things, the problem is complicated by the fact that a particular airway feature may be an important (relevant) predictor only when it pertains to segments of certain generations. Thus, the key is an efficient, consistent method for simultaneously conducting group selection (lung airway feature types) and within-group variable selection (airway generations), i.e., bi-level selection. Here we streamline a comprehensive procedure to process the lung airway data via imputation, normalization, transformation and groupwise principal component analysis, and then adopt a new composite penalized regression approach for conducting bi-level feature selection. As a prototype of composite penalization, the proposed composite bridge regression method is shown to admit an efficient algorithm, enjoy bi-level oracle properties, and outperform several existing methods. We analyze the MDCT lung image data from a cohort of 132 subjects with normal lung function. Our results show that, lung function in terms of FEV1% is promoted by having a less dense and more homogeneous lung comprising an airway whose segments enjoy more heterogeneity in wall thicknesses, larger mean diameters, lumen areas and branch angles. These data hold the potential of defining more accurately the "normal" subject population with borderline atypical lung functions that are clearly influenced by many genetic and environmental factors.

Entities:  

Keywords:  bi-level variable selection; composite penalization; feature extraction; lung airway data; pulmonary function tests

Year:  2017        PMID: 28280520      PMCID: PMC5340208          DOI: 10.1214/16-AOAS947

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  21 in total

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2.  Quantitative analysis of pulmonary airway tree structures.

Authors:  Kálmán Palágyi; Juerg Tschirren; Eric A Hoffman; Milan Sonka
Journal:  Comput Biol Med       Date:  2005-08-01       Impact factor: 4.589

3.  Matching and anatomical labeling of human airway tree.

Authors:  Juerg Tschirren; Geoffrey McLennan; Kálmán Palágyi; Eric A Hoffman; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2005-12       Impact factor: 10.048

4.  Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans.

Authors:  Juerg Tschirren; Eric A Hoffman; Geoffrey McLennan; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2005-12       Impact factor: 10.048

5.  Segmentation and quantitative analysis of intrathoracic airway trees from computed tomography images.

Authors:  Juerg Tschirren; Eric A Hoffman; Geoffrey McLennan; Milan Sonka
Journal:  Proc Am Thorac Soc       Date:  2005

Review 6.  State of the Art. A structural and functional assessment of the lung via multidetector-row computed tomography: phenotyping chronic obstructive pulmonary disease.

Authors:  Eric A Hoffman; Brett A Simon; Geoffrey McLennan
Journal:  Proc Am Thorac Soc       Date:  2006-08

7.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

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Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

Review 8.  Radiological approach to asthma and COPD--the role of computed tomography.

Authors:  Yasutaka Nakano; Nguyen Van Tho; Hideto Yamada; Makoto Osawa; Taishi Nagao
Journal:  Allergol Int       Date:  2009-07-25       Impact factor: 5.836

9.  One-step Sparse Estimates in Nonconcave Penalized Likelihood Models.

Authors:  Hui Zou; Runze Li
Journal:  Ann Stat       Date:  2008-08-01       Impact factor: 4.028

10.  A group bridge approach for variable selection.

Authors:  Jian Huang; Shuange Ma; Huiliang Xie; Cun-Hui Zhang
Journal:  Biometrika       Date:  2009-06       Impact factor: 2.445

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  1 in total

1.  Integrative multi-view regression: Bridging group-sparse and low-rank models.

Authors:  Gen Li; Xiaokang Liu; Kun Chen
Journal:  Biometrics       Date:  2019-03-29       Impact factor: 2.571

  1 in total

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