Literature DB >> 28280206

Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning.

Mei Sheng Lau1,2, Matthew G Schwartz2, Sharmistha Kundu1, Andrej J Savol1,2, Peggy I Wang1,2, Sharon K Marr1, Daniel J Grau1, Patrick Schorderet1, Ruslan I Sadreyev1,3, Clifford J Tabin2, Robert E Kingston4,2.   

Abstract

Nucleosomes play important structural and regulatory roles by tightly wrapping the DNA that constitutes the metazoan genome. The Polycomb group (PcG) proteins modulate nucleosomes to maintain repression of key developmental genes, including Hox genes whose temporal and spatial expression is tightly regulated to guide patterning of the anterior-posterior body axis. CBX2, a component of the mammalian Polycomb repressive complex 1 (PRC1), contains a compaction region that has the biochemically defined activity of bridging adjacent nucleosomes. Here, we demonstrate that a functional compaction region is necessary for proper body patterning, because mutating this region leads to homeotic transformations similar to those observed with PcG loss-of-function mutations. We propose that CBX2-driven nucleosome compaction is a key mechanism by which PcG proteins maintain gene silencing during mouse development.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28280206      PMCID: PMC5503153          DOI: 10.1126/science.aah5403

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  24 in total

1.  Ring1A is a transcriptional repressor that interacts with the Polycomb-M33 protein and is expressed at rhombomere boundaries in the mouse hindbrain.

Authors:  J Schoorlemmer; C Marcos-Gutiérrez; F Were; R Martínez; E García; D P Satijn; A P Otte; M Vidal
Journal:  EMBO J       Date:  1997-10-01       Impact factor: 11.598

Review 2.  Transcriptional regulation by Polycomb group proteins.

Authors:  Luciano Di Croce; Kristian Helin
Journal:  Nat Struct Mol Biol       Date:  2013-10       Impact factor: 15.369

3.  Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation.

Authors:  Sharmistha Kundu; Fei Ji; Hongjae Sunwoo; Gaurav Jain; Jeannie T Lee; Ruslan I Sadreyev; Job Dekker; Robert E Kingston
Journal:  Mol Cell       Date:  2017-02-02       Impact factor: 17.970

4.  A histone mutant reproduces the phenotype caused by loss of histone-modifying factor Polycomb.

Authors:  Ana Raquel Pengelly; Ömer Copur; Herbert Jäckle; Alf Herzig; Jürg Müller
Journal:  Science       Date:  2013-02-08       Impact factor: 47.728

5.  Posterior transformation, neurological abnormalities, and severe hematopoietic defects in mice with a targeted deletion of the bmi-1 proto-oncogene.

Authors:  N M van der Lugt; J Domen; K Linders; M van Roon; E Robanus-Maandag; H te Riele; M van der Valk; J Deschamps; M Sofroniew; M van Lohuizen
Journal:  Genes Dev       Date:  1994-04-01       Impact factor: 11.361

6.  Altered cellular proliferation and mesoderm patterning in Polycomb-M33-deficient mice.

Authors:  N Coré; S Bel; S J Gaunt; M Aurrand-Lions; J Pearce; A Fisher; M Djabali
Journal:  Development       Date:  1997-02       Impact factor: 6.868

7.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

8.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

9.  TopHat: discovering splice junctions with RNA-Seq.

Authors:  Cole Trapnell; Lior Pachter; Steven L Salzberg
Journal:  Bioinformatics       Date:  2009-03-16       Impact factor: 6.937

10.  Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Authors:  Peter V Kharchenko; Michael Y Tolstorukov; Peter J Park
Journal:  Nat Biotechnol       Date:  2008-11-16       Impact factor: 54.908

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  59 in total

1.  Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.

Authors:  Roubina Tatavosian; Samantha Kent; Kyle Brown; Tingting Yao; Huy Nguyen Duc; Thao Ngoc Huynh; Chao Yu Zhen; Brian Ma; Haobin Wang; Xiaojun Ren
Journal:  J Biol Chem       Date:  2018-12-04       Impact factor: 5.157

2.  Discovery and Characterization of a Cellular Potent Positive Allosteric Modulator of the Polycomb Repressive Complex 1 Chromodomain, CBX7.

Authors:  Kelsey N Lamb; Daniel Bsteh; Sarah N Dishman; Hagar F Moussa; Huitao Fan; Jacob I Stuckey; Jacqueline L Norris; Stephanie H Cholensky; Dongxu Li; Jingkui Wang; Cari Sagum; Benjamin Z Stanton; Mark T Bedford; Kenneth H Pearce; Terry P Kenakin; Dmitri B Kireev; Gang Greg Wang; Lindsey I James; Oliver Bell; Stephen V Frye
Journal:  Cell Chem Biol       Date:  2019-08-15       Impact factor: 8.116

Review 3.  Histone H2A Monoubiquitination in Neurodevelopmental Disorders.

Authors:  Anshika Srivastava; Brian McGrath; Stephanie L Bielas
Journal:  Trends Genet       Date:  2017-06-29       Impact factor: 11.639

4.  Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells.

Authors:  Mark F Sabbagh; Jacob S Heng; Chongyuan Luo; Rosa G Castanon; Joseph R Nery; Amir Rattner; Loyal A Goff; Joseph R Ecker; Jeremy Nathans
Journal:  Elife       Date:  2018-09-06       Impact factor: 8.140

5.  The genetic basis for PRC1 complex diversity emerged early in animal evolution.

Authors:  James M Gahan; Fabian Rentzsch; Christine E Schnitzler
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-31       Impact factor: 11.205

6.  The CBX family of proteins in transcriptional repression and memory.

Authors:  Jongmin Kim; Robert E Kingston
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

Review 7.  Polycomb Gene Silencing Mechanisms: PRC2 Chromatin Targeting, H3K27me3 'Readout', and Phase Separation-Based Compaction.

Authors:  Yiran Guo; Shuai Zhao; Gang Greg Wang
Journal:  Trends Genet       Date:  2021-01-22       Impact factor: 11.639

Review 8.  Polycomb/Trithorax Antagonism: Cellular Memory in Stem Cell Fate and Function.

Authors:  Marjorie Brand; Kiran Nakka; Jiayu Zhu; F Jeffrey Dilworth
Journal:  Cell Stem Cell       Date:  2019-04-04       Impact factor: 24.633

9.  Role of remodeling and spacing factor 1 in histone H2A ubiquitination-mediated gene silencing.

Authors:  Zhuo Zhang; Amanda E Jones; Wei Wu; Jinman Kim; Yue Kang; Xiaobao Bi; Yue Gu; Ivan K Popov; Matthew B Renfrow; Marina N Vassylyeva; Dmitry G Vassylyev; Keith E Giles; Dongquan Chen; Ashwath Kumar; Yuhong Fan; Yufeng Tong; Chuan-Fa Liu; Woojin An; Chenbei Chang; Jianjun Luo; Louise T Chow; Hengbin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-30       Impact factor: 11.205

Review 10.  Epigenetic regulation of male fate commitment from an initially bipotential system.

Authors:  S Alexandra Garcia-Moreno; Michael P Plebanek; Blanche Capel
Journal:  Mol Cell Endocrinol       Date:  2018-02-02       Impact factor: 4.102

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