Literature DB >> 28279336

A Microbiome Foundation for the Study of Crohn's Disease.

Dirk Gevers1, Subra Kugathasan2, Dan Knights3, Aleksandar D Kostic4, Rob Knight5, Ramnik J Xavier6.   

Abstract

Our 2014 study published in Cell Host & Microbe, "The Treatment-Naive Microbiome in New-Onset Crohn's Disease," was designed to improve our understanding of the microbiome's role in Crohn's disease by studying a unique, well-suited cohort and sample set. This commentary provides a hindsight perspective of this original study as well as future outlook.
Copyright © 2017 Elsevier Inc. All rights reserved.

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Year:  2017        PMID： 28279336      PMCID： PMC5684696          DOI： 10.1016/j.chom.2017.02.012

Source DB:  PubMed          Journal:  Cell Host Microbe        ISSN： 1931-3128            Impact factor:   21.023


  13 in total

1.  Predictive modeling of gingivitis severity and susceptibility via oral microbiota.

Authors:  Shi Huang; Rui Li; Xiaowei Zeng; Tao He; Helen Zhao; Alice Chang; Cunpei Bo; Jie Chen; Fang Yang; Rob Knight; Jiquan Liu; Catherine Davis; Jian Xu
Journal:  ISME J       Date:  2014-03-20       Impact factor: 10.302

2.  Disease-specific alterations in the enteric virome in inflammatory bowel disease.

Authors:  Jason M Norman; Scott A Handley; Megan T Baldridge; Lindsay Droit; Catherine Y Liu; Brian C Keller; Amal Kambal; Cynthia L Monaco; Guoyan Zhao; Phillip Fleshner; Thaddeus S Stappenbeck; Dermot P B McGovern; Ali Keshavarzian; Ece A Mutlu; Jenny Sauk; Dirk Gevers; Ramnik J Xavier; David Wang; Miles Parkes; Herbert W Virgin
Journal:  Cell       Date:  2015-01-22       Impact factor: 41.582

3.  Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks.

Authors:  Yoshiki Vázquez-Baeza; Embriette R Hyde; Jan S Suchodolski; Rob Knight
Journal:  Nat Microbiol       Date:  2016-10-03       Impact factor: 17.745

4.  Increased Intestinal Microbial Diversity Following Fecal Microbiota Transplant for Active Crohn's Disease.

Authors:  Byron P Vaughn; Tommi Vatanen; Jessica R Allegretti; Aiping Bai; Ramnik J Xavier; Joshua Korzenik; Dirk Gevers; Amanda Ting; Simon C Robson; Alan C Moss
Journal:  Inflamm Bowel Dis       Date:  2016-09       Impact factor: 5.325

5.  The treatment-naive microbiome in new-onset Crohn's disease.

Authors:  Subra Kugathasan; Lee A Denson; Dirk Gevers; Yoshiki Vázquez-Baeza; Will Van Treuren; Boyu Ren; Emma Schwager; Dan Knights; Se Jin Song; Moran Yassour; Xochitl C Morgan; Aleksandar D Kostic; Chengwei Luo; Antonio González; Daniel McDonald; Yael Haberman; Thomas Walters; Susan Baker; Joel Rosh; Michael Stephens; Melvin Heyman; James Markowitz; Robert Baldassano; Anne Griffiths; Francisco Sylvester; David Mack; Sandra Kim; Wallace Crandall; Jeffrey Hyams; Curtis Huttenhower; Rob Knight; Ramnik J Xavier
Journal:  Cell Host Microbe       Date:  2014-03-12       Impact factor: 21.023

6.  Fungal Microbiota Profile in Newly Diagnosed Treatment-naïve Children with Crohn's Disease.

Authors:  Mohammad El Mouzan; Feng Wang; Mohammad Al Mofarreh; Rajita Menon; Ahmad Al Barrag; Kirill S Korolev; Ahmad Al Sarkhy; Mona Al Asmi; Yassin Hamed; Anjum Saeed; Scot E Dowd; Asaad Assiri; Harland Winter
Journal:  J Crohns Colitis       Date:  2017-05-01       Impact factor: 10.020

7.  Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease.

Authors:  Kelly A Shaw; Madeline Bertha; Tatyana Hofmekler; Pankaj Chopra; Tommi Vatanen; Abhiram Srivatsa; Jarod Prince; Archana Kumar; Cary Sauer; Michael E Zwick; Glen A Satten; Aleksandar D Kostic; Jennifer G Mulle; Ramnik J Xavier; Subra Kugathasan
Journal:  Genome Med       Date:  2016-07-13       Impact factor: 11.117

8.  Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease.

Authors:  Noah W Palm; Marcel R de Zoete; Thomas W Cullen; Natasha A Barry; Jonathan Stefanowski; Liming Hao; Patrick H Degnan; Jianzhong Hu; Inga Peter; Wei Zhang; Elizabeth Ruggiero; Judy H Cho; Andrew L Goodman; Richard A Flavell
Journal:  Cell       Date:  2014-08-28       Impact factor: 41.582

9.  Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.

Authors:  Luke Jostins; Stephan Ripke; Rinse K Weersma; Richard H Duerr; Dermot P McGovern; Ken Y Hui; James C Lee; L Philip Schumm; Yashoda Sharma; Carl A Anderson; Jonah Essers; Mitja Mitrovic; Kaida Ning; Isabelle Cleynen; Emilie Theatre; Sarah L Spain; Soumya Raychaudhuri; Philippe Goyette; Zhi Wei; Clara Abraham; Jean-Paul Achkar; Tariq Ahmad; Leila Amininejad; Ashwin N Ananthakrishnan; Vibeke Andersen; Jane M Andrews; Leonard Baidoo; Tobias Balschun; Peter A Bampton; Alain Bitton; Gabrielle Boucher; Stephan Brand; Carsten Büning; Ariella Cohain; Sven Cichon; Mauro D'Amato; Dirk De Jong; Kathy L Devaney; Marla Dubinsky; Cathryn Edwards; David Ellinghaus; Lynnette R Ferguson; Denis Franchimont; Karin Fransen; Richard Gearry; Michel Georges; Christian Gieger; Jürgen Glas; Talin Haritunians; Ailsa Hart; Chris Hawkey; Matija Hedl; Xinli Hu; Tom H Karlsen; Limas Kupcinskas; Subra Kugathasan; Anna Latiano; Debby Laukens; Ian C Lawrance; Charlie W Lees; Edouard Louis; Gillian Mahy; John Mansfield; Angharad R Morgan; Craig Mowat; William Newman; Orazio Palmieri; Cyriel Y Ponsioen; Uros Potocnik; Natalie J Prescott; Miguel Regueiro; Jerome I Rotter; Richard K Russell; Jeremy D Sanderson; Miquel Sans; Jack Satsangi; Stefan Schreiber; Lisa A Simms; Jurgita Sventoraityte; Stephan R Targan; Kent D Taylor; Mark Tremelling; Hein W Verspaget; Martine De Vos; Cisca Wijmenga; David C Wilson; Juliane Winkelmann; Ramnik J Xavier; Sebastian Zeissig; Bin Zhang; Clarence K Zhang; Hongyu Zhao; Mark S Silverberg; Vito Annese; Hakon Hakonarson; Steven R Brant; Graham Radford-Smith; Christopher G Mathew; John D Rioux; Eric E Schadt; Mark J Daly; Andre Franke; Miles Parkes; Severine Vermeire; Jeffrey C Barrett; Judy H Cho
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Consistent Prebiotic Effect on Gut Microbiota With Altered FODMAP Intake in Patients with Crohn's Disease: A Randomised, Controlled Cross-Over Trial of Well-Defined Diets.

Authors:  Emma P Halmos; Claus T Christophersen; Anthony R Bird; Susan J Shepherd; Jane G Muir; Peter R Gibson
Journal:  Clin Transl Gastroenterol       Date:  2016-04-14       Impact factor: 4.488
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  14 in total

Review 1.  Clinician Guide to Microbiome Testing.

Authors:  Christopher Staley; Thomas Kaiser; Alexander Khoruts
Journal:  Dig Dis Sci       Date:  2018-09-28       Impact factor: 3.199

2.  Gut-Bioreactor and Human Health in Future.

Authors:  Hemant J Purohit
Journal:  Indian J Microbiol       Date:  2017-12-15       Impact factor: 2.461

Review 3.  The immune response to Prevotella bacteria in chronic inflammatory disease.

Authors:  Jeppe Madura Larsen
Journal:  Immunology       Date:  2017-06-20       Impact factor: 7.397

4.  Alterations and Correlations of the Gut Microbiome, Performance, Egg Quality, and Serum Biochemical Indexes in Laying Hens with Low-Protein Amino Acid-Deficient Diets.

Authors:  Shunju Geng; Shimeng Huang; Qiugang Ma; Fuyong Li; Yan Gao; Lihong Zhao; Jianyun Zhang
Journal:  ACS Omega       Date:  2021-05-10

Review 5.  Very early-onset inflammatory bowel disease: an integrated approach.

Authors:  Kathleen E Sullivan; Maire Conrad; Judith R Kelsen
Journal:  Curr Opin Allergy Clin Immunol       Date:  2018-12

6.  Diversity of the midstream urine microbiome in adults with chronic kidney disease.

Authors:  Holly Kramer; Gina Kuffel; Krystal Thomas-White; Alan J Wolfe; Kavitha Vellanki; David J Leehey; Vinod K Bansal; Linda Brubaker; Robert Flanigan; Julia Koval; Anuradha Wadhwa; Michael J Zilliox
Journal:  Int Urol Nephrol       Date:  2018-04-12       Impact factor: 2.370

7.  A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina.

Authors:  Bing Ma; Michael T France; Jonathan Crabtree; Johanna B Holm; Michael S Humphrys; Rebecca M Brotman; Jacques Ravel
Journal:  Nat Commun       Date:  2020-02-26       Impact factor: 14.919

8.  The salivary microbiome is consistent between subjects and resistant to impacts of short-term hospitalization.

Authors:  Damien J Cabral; Jenna I Wurster; Myrto E Flokas; Michail Alevizakos; Michelle Zabat; Benjamin J Korry; Aislinn D Rowan; William H Sano; Nikolaos Andreatos; R Bobby Ducharme; Philip A Chan; Eleftherios Mylonakis; Beth Burgwyn Fuchs; Peter Belenky
Journal:  Sci Rep       Date:  2017-09-08       Impact factor: 4.379

9.  Phagocytosis and Epithelial Cell Invasion by Crohn's Disease-Associated Adherent-Invasive Escherichia coli Are Inhibited by the Anti-inflammatory Drug 6-Mercaptopurine.

Authors:  Federica Migliore; Raffaella Macchi; Paolo Landini; Moira Paroni
Journal:  Front Microbiol       Date:  2018-05-14       Impact factor: 5.640

Review 10.  Contrasting Strategies: Human Eukaryotic Versus Bacterial Microbiome Research.

Authors:  Katarzyna B Hooks; Maureen A O'Malley
Journal:  J Eukaryot Microbiol       Date:  2019-10-20       Impact factor: 3.346
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