Literature DB >> 26958293

A Data Quality Ontology for the Secondary Use of EHR Data.

Steven G Johnson1, Stuart Speedie1, Gyorgy Simon1, Vipin Kumar2, Bonnie L Westra3.   

Abstract

The secondary use of EHR data for research is expected to improve health outcomes for patients, but the benefits will only be realized if the data in the EHR is of sufficient quality to support these uses. A data quality (DQ) ontology was developed to rigorously define concepts and enable automated computation of data quality measures. The healthcare data quality literature was mined for the important terms used to describe data quality concepts and harmonized into an ontology. Four high-level data quality dimensions ("correctness", "consistency", "completeness" and "currency") categorize 19 lower level measures. The ontology serves as an unambiguous vocabulary, which defines concepts more precisely than natural language; it provides a mechanism to automatically compute data quality measures; and is reusable across domains and use cases. A detailed example is presented to demonstrate its utility. The DQ ontology can make data validation more common and reproducible.

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Mesh:

Year:  2015        PMID: 26958293      PMCID: PMC4765682     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  10 in total

1.  Root causes underlying challenges to secondary use of data.

Authors:  Jessica S Ancker; Sarah Shih; Mytri P Singh; Andrew Snyder; Alison Edwards; Rainu Kaushal
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

Review 2.  [Review of data quality dimensions and applied methods in the evaluation of health information systems].

Authors:  Claudia Risso de Araujo Lima; Joyce Mendes de Andrade Schramm; Claudia Medina Coeli; Márcia Elizabeth Marinho da Silva
Journal:  Cad Saude Publica       Date:  2009-10       Impact factor: 1.632

3.  Quantifying clinical data quality using relative gold standards.

Authors:  Michael G Kahn; Brian B Eliason; Janet Bathurst
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

Review 4.  Review: electronic health records and the reliability and validity of quality measures: a review of the literature.

Authors:  Kitty S Chan; Jinnet B Fowles; Jonathan P Weiner
Journal:  Med Care Res Rev       Date:  2010-02-11       Impact factor: 3.929

Review 5.  Accuracy of data in computer-based patient records.

Authors:  W R Hogan; M M Wagner
Journal:  J Am Med Inform Assoc       Date:  1997 Sep-Oct       Impact factor: 4.497

Review 6.  Towards an ontology for data quality in integrated chronic disease management: a realist review of the literature.

Authors:  S T Liaw; A Rahimi; P Ray; J Taggart; S Dennis; S de Lusignan; B Jalaludin; A E T Yeo; A Talaei-Khoei
Journal:  Int J Med Inform       Date:  2012-11-02       Impact factor: 4.046

7.  A pragmatic framework for single-site and multisite data quality assessment in electronic health record-based clinical research.

Authors:  Michael G Kahn; Marsha A Raebel; Jason M Glanz; Karen Riedlinger; John F Steiner
Journal:  Med Care       Date:  2012-07       Impact factor: 2.983

Review 8.  Review: use of electronic medical records for health outcomes research: a literature review.

Authors:  Bonnie B Dean; Jessica Lam; Jaime L Natoli; Qiana Butler; Daniel Aguilar; Robert J Nordyke
Journal:  Med Care Res Rev       Date:  2009-03-11       Impact factor: 3.929

Review 9.  Methods and dimensions of electronic health record data quality assessment: enabling reuse for clinical research.

Authors:  Nicole Gray Weiskopf; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2012-06-25       Impact factor: 4.497

Review 10.  A review of data quality assessment methods for public health information systems.

Authors:  Hong Chen; David Hailey; Ning Wang; Ping Yu
Journal:  Int J Environ Res Public Health       Date:  2014-05-14       Impact factor: 3.390

  10 in total
  17 in total

1.  ODaCCI: Ontology-guided Data Curation for Multisite Clinical Research Data Integration in the NINDS Center for SUDEP Research.

Authors:  Licong Cui; Yan Huang; Shiqiang Tao; Samden D Lhatoo; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  Application of An Ontology for Characterizing Data Quality For a Secondary Use of EHR Data.

Authors:  Steven G Johnson; Stuart Speedie; Gyorgy Simon; Vipin Kumar; Bonnie L Westra
Journal:  Appl Clin Inform       Date:  2016-02-10       Impact factor: 2.342

3.  Quantifying the Effect of Data Quality on the Validity of an eMeasure.

Authors:  Steven G Johnson; Stuart Speedie; Gyorgy Simon; Vipin Kumar; Bonnie L Westra
Journal:  Appl Clin Inform       Date:  2017-12-14       Impact factor: 2.342

4.  Digital Diabetes Data and Artificial Intelligence: A Time for Humility Not Hubris.

Authors:  David Kerr; David C Klonoff
Journal:  J Diabetes Sci Technol       Date:  2018-09-05

5.  Workflow Differences Affect Data Accuracy in Oncologic EHRs: A First Step Toward Detangling the Diagnosis Data Babel.

Authors:  Franck Diaz-Garelli; Roy Strowd; Virginia L Lawson; Maria E Mayorga; Brian J Wells; Thomas W Lycan; Umit Topaloglu
Journal:  JCO Clin Cancer Inform       Date:  2020-06

6.  Reporting Data Quality Assessment Results: Identifying Individual and Organizational Barriers and Solutions.

Authors:  Tiffany Callahan; Juliana Barnard; Laura Helmkamp; Julie Maertens; Michael Kahn
Journal:  EGEMS (Wash DC)       Date:  2017-09-04

7.  A Comparison of Data Quality Assessment Checks in Six Data Sharing Networks.

Authors:  Tiffany J Callahan; Alan E Bauck; David Bertoch; Jeff Brown; Ritu Khare; Patrick B Ryan; Jenny Staab; Meredith N Zozus; Michael G Kahn
Journal:  EGEMS (Wash DC)       Date:  2017-06-12

8.  A classification framework for exploiting sparse multi-variate temporal features with application to adverse drug event detection in medical records.

Authors:  Francesco Bagattini; Isak Karlsson; Jonathan Rebane; Panagiotis Papapetrou
Journal:  BMC Med Inform Decis Mak       Date:  2019-01-10       Impact factor: 2.796

9.  Merging heterogeneous clinical data to enable knowledge discovery.

Authors:  Martin G Seneviratne; Michael G Kahn; Tina Hernandez-Boussard
Journal:  Pac Symp Biocomput       Date:  2019

10.  A Harmonized Data Quality Assessment Terminology and Framework for the Secondary Use of Electronic Health Record Data.

Authors:  Michael G Kahn; Tiffany J Callahan; Juliana Barnard; Alan E Bauck; Jeff Brown; Bruce N Davidson; Hossein Estiri; Carsten Goerg; Erin Holve; Steven G Johnson; Siaw-Teng Liaw; Marianne Hamilton-Lopez; Daniella Meeker; Toan C Ong; Patrick Ryan; Ning Shang; Nicole G Weiskopf; Chunhua Weng; Meredith N Zozus; Lisa Schilling
Journal:  EGEMS (Wash DC)       Date:  2016-09-11
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