Literature DB >> 10899214

Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements.

K D Harris1, D A Henze, J Csicsvari, H Hirase, G Buzsáki.   

Abstract

Simultaneous recording from large numbers of neurons is a prerequisite for understanding their cooperative behavior. Various recording techniques and spike separation methods are being used toward this goal. However, the error rates involved in spike separation have not yet been quantified. We studied the separation reliability of "tetrode" (4-wire electrode)-recorded spikes by monitoring simultaneously from the same cell intracellularly with a glass pipette and extracellularly with a tetrode. With manual spike sorting, we found a trade-off between Type I and Type II errors, with errors typically ranging from 0 to 30% depending on the amplitude and firing pattern of the cell, the similarity of the waveshapes of neighboring neurons, and the experience of the operator. Performance using only a single wire was markedly lower, indicating the advantages of multiple-site monitoring techniques over single-wire recordings. For tetrode recordings, error rates were increased by burst activity and during periods of cellular synchrony. The lowest possible separation error rates were estimated by a search for the best ellipsoidal cluster shape. Human operator performance was significantly below the estimated optimum. Investigation of error distributions indicated that suboptimal performance was caused by inability of the operators to mark cluster boundaries accurately in a high-dimensional feature space. We therefore hypothesized that automatic spike-sorting algorithms have the potential to significantly lower error rates. Implementation of a semi-automatic classification system confirms this suggestion, reducing errors close to the estimated optimum, in the range 0-8%.

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Year:  2000        PMID: 10899214     DOI: 10.1152/jn.2000.84.1.401

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  415 in total

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Authors:  S A Hollup; S Molden; J G Donnett; M B Moser; E I Moser
Journal:  J Neurosci       Date:  2001-03-01       Impact factor: 6.167

2.  Firing rates of hippocampal neurons are preserved during subsequent sleep episodes and modified by novel awake experience.

Authors:  H Hirase; X Leinekugel; A Czurkó; J Csicsvari; G Buzsáki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

3.  Measuring the quality of neuronal identification in ensemble recordings.

Authors:  Samuel A Neymotin; William W Lytton; Andrey V Olypher; André A Fenton
Journal:  J Neurosci       Date:  2011-11-09       Impact factor: 6.167

4.  Spatial representation of corticofugal input in the inferior colliculus: a multicontact silicon probe approach.

Authors:  S C Bledsoe; S E Shore; M J Guitton
Journal:  Exp Brain Res       Date:  2003-10-22       Impact factor: 1.972

5.  Communication between neocortex and hippocampus during sleep in rodents.

Authors:  Anton Sirota; Jozsef Csicsvari; Derek Buhl; György Buzsáki
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-07       Impact factor: 11.205

6.  A Subpopulation of Striatal Neurons Mediates Levodopa-Induced Dyskinesia.

Authors:  Allison E Girasole; Matthew Y Lum; Diane Nathaniel; Chloe J Bair-Marshall; Casey J Guenthner; Liqun Luo; Anatol C Kreitzer; Alexandra B Nelson
Journal:  Neuron       Date:  2018-02-01       Impact factor: 17.173

Review 7.  Technologies for imaging neural activity in large volumes.

Authors:  Na Ji; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

Review 8.  Improving data quality in neuronal population recordings.

Authors:  Kenneth D Harris; Rodrigo Quian Quiroga; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

9.  Cocaine Place Conditioning Strengthens Location-Specific Hippocampal Coupling to the Nucleus Accumbens.

Authors:  Lucas Sjulson; Adrien Peyrache; Andrea Cumpelik; Daniela Cassataro; György Buzsáki
Journal:  Neuron       Date:  2018-05-10       Impact factor: 17.173

10.  Hippocampal network dynamics constrain the time lag between pyramidal cells across modified environments.

Authors:  Kamran Diba; György Buzsáki
Journal:  J Neurosci       Date:  2008-12-10       Impact factor: 6.167

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