Literature DB >> 28244994

Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion.

Yuan Zong1,2, Yanpeng Wang1,2, Chao Li1,2, Rui Zhang1, Kunling Chen1, Yidong Ran3, Jin-Long Qiu4, Daowen Wang1, Caixia Gao1.   

Abstract

Targeted base editing in plants without the need for a foreign DNA donor or double-stranded DNA cleavage would accelerate genome modification and breeding in a wide array of crops. We used a CRISPR-Cas9 nickase-cytidine deaminase fusion to achieve targeted conversion of cytosine to thymine from position 3 to 9 within the protospacer in both protoplasts and regenerated rice, wheat and maize plants at frequencies of up to 43.48%.

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Year:  2017        PMID: 28244994     DOI: 10.1038/nbt.3811

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  22 in total

Review 1.  Single-nucleotide mutations for plant functional genomics.

Authors:  Steven Henikoff; Luca Comai
Journal:  Annu Rev Plant Biol       Date:  2003       Impact factor: 26.379

2.  Targeted genome modification of crop plants using a CRISPR-Cas system.

Authors:  Qiwei Shan; Yanpeng Wang; Jun Li; Yi Zhang; Kunling Chen; Zhen Liang; Kang Zhang; Jinxing Liu; Jianzhong Jeff Xi; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2013-08       Impact factor: 54.908

3.  Directed evolution using dCas9-targeted somatic hypermutation in mammalian cells.

Authors:  Gaelen T Hess; Laure Frésard; Kyuho Han; Cameron H Lee; Amy Li; Karlene A Cimprich; Stephen B Montgomery; Michael C Bassik
Journal:  Nat Methods       Date:  2016-10-31       Impact factor: 28.547

4.  Targeted AID-mediated mutagenesis (TAM) enables efficient genomic diversification in mammalian cells.

Authors:  Yunqing Ma; Jiayuan Zhang; Weijie Yin; Zhenchao Zhang; Yan Song; Xing Chang
Journal:  Nat Methods       Date:  2016-10-10       Impact factor: 28.547

5.  Targeted mutagenesis in Zea mays using TALENs and the CRISPR/Cas system.

Authors:  Zhen Liang; Kang Zhang; Kunling Chen; Caixia Gao
Journal:  J Genet Genomics       Date:  2013-12-14       Impact factor: 4.275

6.  Simultaneous editing of three homoeoalleles in hexaploid bread wheat confers heritable resistance to powdery mildew.

Authors:  Yanpeng Wang; Xi Cheng; Qiwei Shan; Yi Zhang; Jinxing Liu; Caixia Gao; Jin-Long Qiu
Journal:  Nat Biotechnol       Date:  2014-07-20       Impact factor: 54.908

Review 7.  TILLING: a shortcut in functional genomics.

Authors:  Marzena Kurowska; Agata Daszkowska-Golec; Damian Gruszka; Marek Marzec; Miriam Szurman; Iwona Szarejko; Miroslaw Maluszynski
Journal:  J Appl Genet       Date:  2011-09-13       Impact factor: 3.240

8.  Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA.

Authors:  Yi Zhang; Zhen Liang; Yuan Zong; Yanpeng Wang; Jinxing Liu; Kunling Chen; Jin-Long Qiu; Caixia Gao
Journal:  Nat Commun       Date:  2016-08-25       Impact factor: 14.919

9.  Precision genome engineering and agriculture: opportunities and regulatory challenges.

Authors:  Daniel F Voytas; Caixia Gao
Journal:  PLoS Biol       Date:  2014-06-10       Impact factor: 8.029

10.  High-frequency, precise modification of the tomato genome.

Authors:  Tomáš Čermák; Nicholas J Baltes; Radim Čegan; Yong Zhang; Daniel F Voytas
Journal:  Genome Biol       Date:  2015-11-06       Impact factor: 13.583

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  198 in total

Review 1.  Single-nucleotide editing: From principle, optimization to application.

Authors:  Jinling Tang; Trevor Lee; Tao Sun
Journal:  Hum Mutat       Date:  2019-09-15       Impact factor: 4.878

2.  Genome, Epigenome, and Transcriptome Editing via Chemical Modification of Nucleobases in Living Cells.

Authors:  Brodie L Ranzau; Alexis C Komor
Journal:  Biochemistry       Date:  2018-12-12       Impact factor: 3.162

3.  Precise, predictable multi-nucleotide deletions in rice and wheat using APOBEC-Cas9.

Authors:  Shengxing Wang; Yuan Zong; Qiupeng Lin; Huawei Zhang; Zhuangzhuang Chai; Dandan Zhang; Kunling Chen; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2020-06-29       Impact factor: 54.908

4.  OsmiR396d Affects Gibberellin and Brassinosteroid Signaling to Regulate Plant Architecture in Rice.

Authors:  Yongyan Tang; Huanhuan Liu; Siyi Guo; Bo Wang; Zhitao Li; Kang Chong; Yunyuan Xu
Journal:  Plant Physiol       Date:  2017-11-27       Impact factor: 8.340

Review 5.  CRISPR/Cas systems: opportunities and challenges for crop breeding.

Authors:  Sukumar Biswas; Dabing Zhang; Jianxin Shi
Journal:  Plant Cell Rep       Date:  2021-05-11       Impact factor: 4.570

6.  Development and Characterization of a Modular CRISPR and RNA Aptamer Mediated Base Editing System.

Authors:  Juan Carlos Collantes; Victor M Tan; Huiting Xu; Melany Ruiz-Urigüen; Amer Alasadi; Jingjing Guo; Hanlin Tao; Chi Su; Katarzyna M Tyc; Tommaso Selmi; John J Lambourne; Jennifer A Harbottle; Jesse Stombaugh; Jinchuan Xing; Ceri M Wiggins; Shengkan Jin
Journal:  CRISPR J       Date:  2021-02

7.  Base editing on the rise.

Authors:  Andrew May
Journal:  Nat Biotechnol       Date:  2017-05-09       Impact factor: 54.908

8.  Editing the human genome: where ART and science intersect.

Authors:  Avner Hershlag; Sara L Bristow
Journal:  J Assist Reprod Genet       Date:  2018-06-07       Impact factor: 3.412

Review 9.  Crop resistant starch and genetic improvement: a review of recent advances.

Authors:  Jian Xia; Dong Zhu; Ruomei Wang; Yue Cui; Yueming Yan
Journal:  Theor Appl Genet       Date:  2018-10-29       Impact factor: 5.699

10.  Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A.

Authors:  Yuan Zong; Qianna Song; Chao Li; Shuai Jin; Dingbo Zhang; Yanpeng Wang; Jin-Long Qiu; Caixia Gao
Journal:  Nat Biotechnol       Date:  2018-10-01       Impact factor: 54.908

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