| Literature DB >> 28240845 |
Jamal Jafari Nedooshan1, Mohammad Forat Yazdi, Hossein Neamatzadeh, Masoud Zare Shehneh, Saeed Kargar, Niloofar Seddighi.
Abstract
Background: A number of case-control studies have evaluated associations between the X-ray cross complementary group 1 protein (XRCC1) gene rs1799782 (Arg194Trp), rs25487 (Arg399Gln) and rs25489 (Arg280His) polymorphisms and thyroid cancer (TC) risk, but the results remain inconclusive. Materials andEntities:
Keywords: Thyroid cancer; XRCC1 gene; polymorphism; association; meta-analysis
Year: 2017 PMID: 28240845 PMCID: PMC5563111 DOI: 10.22034/APJCP.2017.18.1.263
Source DB: PubMed Journal: Asian Pac J Cancer Prev ISSN: 1513-7368
Characteristics of Studies Included in the Meta Analysis of XRCC1 rs25489 Polymorphism and TC
| First author | Country (Ethnicity) | Case/Control | Cases | Controls | HWE | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genotype | Allele | Genotype | Allele | ||||||||||
| GG | GA | AA | G | A | GG | GA | AA | G | A | ||||
| Chiang et al. 2008 | China (Asian) | 283/469 | 224 | 54 | 5 | 502 | 64 | 349 | 113 | 7 | 811 | 127 | 0.528 |
| Siraj et al. 2008 | Saudi Arabia (Asian) | 50/299 | 33 | 12 | 5 | 78 | 22 | 129 | 79 | 21 | 337 | 121 | 0.088 |
| Sigurdson et al. 2009 | Russia (Caucasian) | 25/896 | 24 | 1 | 0 | 49 | 1 | 800 | 96 | 0 | 1696 | 96 | 0.902 |
| Akulevich et al. 2009 | Russia (Caucasian) | 132/398 | 117 | 15 | 0 | 249 | 15 | 366 | 32 | 0 | 764 | 32 | 0.403 |
| Akulevich et al. 2009 | Belarus (Caucasian) | 123/195 | 113 | 10 | 0 | 236 | 10 | 176 | 19 | 0 | 371 | 19 | 0.474 |
| Ho et al. 2009 | USA (Caucasian) | 251/503 | 229 | 22 | 0 | 480 | 22 | 453 | 50 | 0 | 956 | 50 | 0.24 |
| Esfahani et al. 2011 | Iran (Asian) | 170/193 | 146 | 23 | 1 | 315 | 25 | 173 | 18 | 2 | 364 | 22 | 0.065 |
| Garcia et al. 2011 | Spain (Caucasian) | 402/479 | 337 | 58 | 3 | 732 | 64 | 426 | 44 | 3 | 896 | 50 | 0.123 |
| Wang et al. 2015 | China (Asian) | 276/552 | 153 | 91 | 32 | 397 | 155 | 322 | 174 | 56 | 818 | 286 | <0.001 |
| Yan et al. 2015 | China (Asian) | 276/403 | 218 | 52 | 6 | 488 | 64 | 298 | 97 | 8 | 693 | 113 | 0.974 |
| Halkova et al. 2016 | Czech (Caucasian) | 209/374 | 188 | 19 | 2 | 395 | 23 | 338 | 36 | 0 | 712 | 36 | 0.328 |
Characteristics of Studies Included in the Meta Analysis of XRCC1 rs1799782 Polymorphism and TC
| First author | Country (Ethnicity) | Case/Control | Cases | Control | HWE | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genotype | Allele | Genotype | Allele | ||||||||||
| CC | CT | TT | C | T | CC | CT | TT | C | T | ||||
| Chiang et al. 2008 | China (Asian) | 283/469 | 127 | 119 | 37 | 373 | 193 | 254 | 119 | 36 | 627 | 191 | 0.002 |
| Ho et al. 2009 | USA (Caucasian) | 251/503 | 203 | 45 | 3 | 451 | 51 | 433 | 69 | 1 | 935 | 71 | 0.306 |
| Esfahani et al. 2011 | Iran (Asian) | 157/187 | 136 | 18 | 3 | 290 | 24 | 166 | 20 | 1 | 352 | 22 | 0.641 |
| Ryu et al. 2011 | Korea (Asian) | 111/100 | 59 | 43 | 9 | 161 | 61 | 37 | 49 | 14 | 123 | 77 | 0.728 |
| Santos et al. 2012 | Portugal (Caucasian) | 109/217 | 98 | 8 | 2 | 204 | 12 | 196 | 21 | 0 | 413 | 21 | 0.453 |
| Yan et al. 2015 | China (Asian) | 276/403 | 124 | 112 | 40 | 360 | 192 | 202 | 173 | 28 | 577 | 229 | 0.267 |
| Wang et al. 2015 | China (Asian) | 276/552 | 181 | 52 | 43 | 414 | 138 | 411 | 95 | 46 | 917 | 187 | <0.001 |
| Halkova et al. 2016 | Czech (Caucasian) | 209/374 | 178 | 31 | 0 | 387 | 31 | 314 | 59 | 1 | 687 | 61 | 0.304 |
Characteristics of Studies Included in the Meta Analysis of XRCC1 rs25487 Polymorphism and TC
| First author | Country (Ethnicity) | Case/Control | Cases | Controls | HWE | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genotype | Allele | Genotype | Allele | ||||||||||
| GG | AG | AA | G | A | GG | AG | AA | G | A | ||||
| Zhu et al. 2004 | China (Asian) | 105/105 | 49 | 44 | 12 | 208 | 134 | 57 | 45 | 3 | 159 | 51 | 0.092 |
| Chiang et al. 2008 | China (Asian) | 283/469 | 150 | 110 | 23 | 410 | 156 | 277 | 165 | 27 | 719 | 219 | 0.711 |
| Siraj et al. 2008 | Saudi Arabia (Asian) | 50/299 | 35 | 13 | 2 | 83 | 17 | 142 | 72 | 15 | 356 | 102 | 0.164 |
| Sigurdsson et al. 2009 | Russia (Caucasian) | 24/892 | 12 | 10 | 2 | 34 | 14 | 460 | 343 | 89 | 1,263 | 521 | 0.036 |
| Akulevich et al. 2009 | Russia (Caucasian) | 132/398 | 65 | 53 | 14 | 183 | 81 | 158 | 193 | 47 | 509 | 287 | 0.302 |
| Akulevich et al. 2009 | Belarus (Caucasian) | 123/199 | 55 | 50 | 18 | 160 | 86 | 75 | 100 | 22 | 250 | 144 | 0.185 |
| Ho et al. 2009 | USA (Caucasian) | 251/503 | 133 | 99 | 19 | 365 | 137 | 220 | 216 | 67 | 656 | 350 | 0.229 |
| Esfahani et al. 2011 | Iran (Asian) | 155/190 | 78 | 60 | 17 | 216 | 94 | 83 | 87 | 20 | 253 | 127 | 0.69 |
| Ryu et al. 2011 | Korea (Asian) | 111/100 | 87 | 17 | 7 | 191 | 31 | 72 | 19 | 9 | 163 | 37 | 0.002 |
| Garcia et al. 2011 | Spain (Caucasian) | 402/479 | 153 | 186 | 47 | 492 | 280 | 196 | 212 | 66 | 604 | 344 | 0.476 |
| Santos et al. 2012 | Portugal (Caucasian) | 109/217 | 46 | 50 | 13 | 142 | 76 | 87 | 105 | 25 | 279 | 155 | 0.428 |
| Wang et al. 2015 | China (Asian) | 276/552 | 138 | 105 | 32 | 381 | 169 | 290 | 206 | 56 | 786 | 318 | 0.034 |
| Yan et al. 2015 | China (Asian) | 276/403 | 146 | 108 | 22 | 400 | 152 | 176 | 173 | 54 | 525 | 281 | 0.271 |
| Halkova et al. 2016 | Czech (Caucasian) | 209/374 | 97 | 81 | 31 | 275 | 143 | 164 | 160 | 50 | 488 | 260 | 0.272 |
Meta-Analysis of the Association of XRCC1 rs1799782 Polymorphism with TC
| Genetic model | Type of model | Heterogeneity | Odds ratio | ||||
|---|---|---|---|---|---|---|---|
| I2 (%) | PH | OR | 95% CI | POR | |||
| Overall | |||||||
| T vs. C | Random | 77.5 | <0.001 | 1.276 | 0.980-1.660 | 0.07 | |
| TC vs. CC | Random | 64.0 | 0.007 | 1.122 | 0.856-1.470 | 0.406 | |
| TT vs. CC | Random | 51.9 | 0.042 | 1.815 | 1.115-2.953 | 0.016 | |
| TT+TC vs. CC | Random | 77.9 | <0.001 | 1.232 | 0.895-1.696 | 0.201 | |
| TT vs. TC+CC | Fixed | 37.8 | 0.128 | 1.854 | 1.433-2.399 | <0.001 | |
| Ethnicity | |||||||
| Caucasian | |||||||
| T vs. C | Fixed | 29.1 | 0.244 | 1.202 | 0.919-1.572 | 0.179 | |
| TC vs. CC | Fixed | 19.1 | 0.29 | 1.092 | 0.782-1.527 | 0.605 | |
| TT vs. CC | Fixed | 0.0 | 0.389 | 4.031 | 0.828-19.620 | 0.084 | |
| TT+TC vs. CC | Fixed | 21.3 | 0.281 | 1.161 | 0.872-1.544 | 0.307 | |
| TT vs. TC+CC | Fixed | 0.0 | 0.397 | 3.956 | 0.813-19.246 | 0.088 | |
| Asian | |||||||
| T vs. C | Random | 84.9 | <0.001 | 1.323 | 0.932-1.879 | 0.117 | |
| TC vs. CC | Random | 75.8 | 0.002 | 1.141 | 0.774-1.683 | 0.504 | |
| TT vs. CC | Random | 66.1 | 0.019 | 1.681 | 0.995-2.838 | 0.052 | |
| TT+TC vs. CC | Random | 85.2 | <0.001 | 1.289 | 0.823-2.020 | 0.267 | |
| TT vs. TC+CC | Fixed | 52.9 | 0.075 | 1.816 | 1.398-2.358 | <0.001 | |
Figure 1Forest Plots Showed Significant Association between XRCC1 Polymorphisms and TC Risk. A: XRCC1 rs1799782 polymorphism (Allele model: T vs. C) and B: XRCC1 rs25487 polymorphism (Homozygote model: AA vs. GG)
Meta-Analysis of the Association of XRCC1 rs25487 Polymorphism with TC
| Genetic model | Type of model | Heterogeneity | Odds ratio | ||||
|---|---|---|---|---|---|---|---|
| I2 (%) | PH | OR | 95% CI | POR | |||
| Overall | |||||||
| A vs. G | Random | 93.3 | <0.001 | 1.131 | 0.829-1.543 | 0.136 | |
| AG vs. GG | Fixed | 14.4 | 0.296 | 0.903 | 0.811-1.006 | 0.063 | |
| AA vs. GG | Random | 48.4 | 0.022 | 0.892 | 0.690-1.153 | 0.382 | |
| AA+AG vs. GG | Random | 42.3 | 0.048 | 0.88 | 0.766-1.012 | 0.073 | |
| AA vs. AG+GG | Fixed | 33.0 | 0.111 | 0.94 | 0.797-1.109 | 0.462 | |
| Ethnicity | |||||||
| Caucasian | |||||||
| A vs. G | Fixed | 0.0 | 0.429 | 0.882 | 0.794-0.979 | 0.018 | |
| AG vs. GG | Fixed | 8.6 | 0.363 | 0.861 | 0.742-1.001 | 0.051 | |
| AA vs. GG | Fixed | 1.4 | 0.414 | 0.835 | 0.663-1.051 | 0.124 | |
| AA+AG vs. GG | Fixed | 0.0 | 0.541 | 0.838 | 0.728-0.965 | 0.014 | |
| AA vs. AG+GG | Fixed | 6.8 | 0.376 | 0.89 | 0.716-1.106 | 0.249 | |
| Asian | |||||||
| A vs. G | Random | 96.2 | <0.001 | 1.435 | 0.762-2.699 | 0.263 | |
| AG vs. GG | Fixed | 23.3 | 0.251 | 0.95 | 0.814-1.108 | 0.512 | |
| AA vs. GG | Random | 67.8 | 0.005 | 0.982 | 0.591-1.631 | 0.944 | |
| AA+AG vs. GG | Random | 62.9 | 0.013 | 0.927 | 0.719-1.195 | 0.559 | |
| AA vs. AG+GG | Fixed | 50.8 | 0.058 | 0.906 | 0.711-1.154 | 0.423 | |
Meta-Analysis of the Association of XRCC1 rs25489 Polymorphism with TC.
| Genetic model | Type of model | Heterogeneity | Odds ratio | ||||
|---|---|---|---|---|---|---|---|
| I2 (%) | PH | OR | 95% CI | POR | |||
| Overall | |||||||
| A vs. G | Fixed | 23.4 | 0.22 | 1.044 | 0.920-1.183 | 0.507 | |
| AG vs. GG | Fixed | 42.4 | 0.067 | 0.984 | 0.848-1.141 | 0.836 | |
| AA vs. GG | Fixed | 0.0 | 0.891 | 1.154 | 0.803-1.658 | 0.439 | |
| AA+AG vs. GG | Fixed | 32.8 | 0.137 | 1.023 | 0.887-1.179 | 0.758 | |
| AA vs. AG+GG | Fixed | 0.0 | 0.894 | 1.206 | 0.846-1.719 | 0.3 | |
| Ethnicity | |||||||
| Caucasian | |||||||
| A vs. G | Fixed | 15.1 | 0.317 | 1.205 | 0.955-1.520 | 0.116 | |
| AG vs. GG | Fixed | 29.5 | 0.214 | 1.172 | 0.916-1.500 | 0.206 | |
| AA vs. GG | Fixed | 19.9 | 0.264 | 1.939 | 0.468-8.026 | 0.361 | |
| AA+AG vs. GG | Fixed | 24.9 | 0.248 | 1.194 | 0.936-1.521 | 0.153 | |
| AA vs. AG+GG | Fixed | 24.8 | 0.249 | 1.855 | 0.448-7.673 | 0.394 | |
| Asian | |||||||
| A vs. G | Fixed | 21.5 | 0.278 | 0.983 | 0.847-1.142 | 0.825 | |
| AG vs. GG | Fixed | 44.5 | 0.125 | 0.89 | 0.738-1.073 | 0.222 | |
| AA vs. GG | Fixed | 0.0 | 0.974 | 1.113 | 0.765-1.619 | 0.575 | |
| AA+AG vs. GG | Fixed | 31.6 | 0.211 | 0.943 | 0.790-1.124 | 0.511 | |
| AA vs. AG+GG | Fixed | 0.0 | 0.968 | 1.172 | 0.813-1.690 | 0.395 | |
Figure 2Begg’s Funnel Plots of XRCC1 Gene Polymorphisms and TC Risk for Publication Bias Test. Each Point Represents a Separate Study for the Indicated Association. A: XRCC1 rs1799782 polymorphism (Allele model: T vs. C) and B: XRCC1 rs25487 polymorphism (Dominant model: AA+AG vs. GG)