| Literature DB >> 28225792 |
Eugene Lin1,2,3, Shih-Jen Tsai4,5, Po-Hsiu Kuo6, Yu-Li Liu7, Albert C Yang4,5, Chung-Feng Kao8, Cheng-Hung Yang4,5.
Abstract
Evidence indicates that the pathophysiologic mechanisms associated with insulin resistance may contribute to cognitive aging and Alzheimer's diseases. In this study, we hypothesize that single nucleotide polymorphisms (SNPs) within insulin resistance-associated genes, such as the ADAM metallopeptidase with thrombospondin type 1 motif 9 (ADAMTS9), glucokinase regulator (GCKR), and peroxisome proliferator activated receptor gamma (PPARG) genes, may be linked with cognitive aging independently and/or through complex interactions in an older Taiwanese population. A total of 547 Taiwanese subjects aged over 60 years from the Taiwan Biobank were analyzed. Mini-Mental State Examinations (MMSE) were administered to all subjects, and MMSE scores were used to measure cognitive functions. Our data showed that four SNPs (rs73832338, rs9985304, rs4317088, and rs9831846) in the ADAMTS9 gene were significantly associated with cognitive aging among the subjects (P = 1.5 x 10-6 ~ 0.0002). This association remained significant after performing Bonferroni correction. Additionally, we found that interactions between the ADAMTS9 rs9985304 and ADAMTS9 rs76346246 SNPs influenced cognitive aging (P < 0.001). However, variants in the GCKR and PPARG genes had no association with cognitive aging in our study. Our study indicates that the ADAMTS9 gene may contribute to susceptibility to cognitive aging independently as well as through SNP-SNP interactions.Entities:
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Year: 2017 PMID: 28225792 PMCID: PMC5321460 DOI: 10.1371/journal.pone.0172440
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographic and clinical characteristics of Taiwanese study subjects.
| Characteristic | Overall |
|---|---|
| No. of subjects, n | 547 |
| Mean age ± SD, years | 64.1±3.0 |
| Female, % | 50.63 |
| Less than high school graduate, n | 214 |
| MMSE score, median (IQR) | 27 (25–29) |
IQR = interquartile range, MMSE = Mini-Mental State Examination, SD = standard deviation.
Data are presented as mean ± standard deviation.
All participants self-reported as being of Taiwanese Han Chinese ancestry.
Linear regression models of associations between the MMSE scores and 16 tag SNPs within the ADAMTS9 and PPARG genes, which have an evidence of association (P < 0.05).
| Additive model | Recessive model | Dominant model | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | CHR | SNP | A1 | A2 | MAF | BETA | SE | P | BETA | SE | P | BETA | SE | P |
| 3 | rs17070967 | C | T | 0.077 | -0.04 | 0.70 | 0.9574 | 0.05 | 1.41 | 0.9716 | -0.72 | 0.32 | 0.0264 | |
| rs1561988 | A | G | 0.496 | -0.42 | 0.17 | 0.0138 | -0.78 | 0.28 | 0.0054 | -0.33 | 0.28 | 0.2316 | ||
| rs1014640 | T | C | 0.441 | -0.51 | 0.17 | 0.0034 | -1.00 | 0.30 | 0.0010 | -0.31 | 0.26 | 0.2344 | ||
| rs17071042 | C | A | 0.076 | 0.59 | 0.99 | 0.5527 | 1.29 | 1.99 | 0.5170 | -0.66 | 0.33 | 0.0448 | ||
| rs3935273 | T | C | 0.218 | -0.31 | 0.31 | 0.3097 | -0.42 | 0.61 | 0.4918 | -0.58 | 0.25 | 0.0185 | ||
| rs76346246 | C | T | 0.070 | 0.03 | 1.40 | 0.9818 | 0.18 | 2.81 | 0.9499 | -0.96 | 0.34 | 0.0047 | ||
| rs60073432 | A | G | 0.251 | 0.29 | 0.24 | 0.2344 | 0.33 | 0.48 | 0.4860 | 0.57 | 0.24 | 0.0184 | ||
| rs73832338 | T | C | 0.207 | 1.01 | 0.31 | 0.0012 | 1.78 | 0.62 | 0.0042 | 0.93 | 0.25 | |||
| rs9985304 | A | G | 0.427 | -0.74 | 0.17 | -1.22 | 0.30 | -0.74 | 0.26 | 0.0040 | ||||
| rs4317088 | C | T | 0.490 | -0.82 | 0.17 | -1.15 | 0.28 | -1.03 | 0.28 | |||||
| rs6445420 | C | T | 0.083 | -1.45 | 0.63 | 0.0221 | -2.87 | 1.26 | 0.0232 | -0.39 | 0.35 | 0.2595 | ||
| rs9831846 | C | T | 0.484 | -0.71 | 0.17 | -1.03 | 0.27 | -0.88 | 0.27 | 0.0013 | ||||
| rs7646362 | A | G | 0.046 | 0.83 | 1.40 | 0.5556 | 1.72 | 2.82 | 0.5408 | -0.93 | 0.44 | 0.0353 | ||
| rs75581931 | A | G | 0.224 | -0.68 | 0.31 | 0.0289 | -1.32 | 0.61 | 0.0314 | -0.22 | 0.24 | 0.3670 | ||
| rs80118777 | G | T | 0.150 | -1.03 | 0.50 | 0.0397 | -2.03 | 1.00 | 0.0424 | -0.22 | 0.26 | 0.4000 | ||
| 3 | rs78287138 | T | C | 0.142 | 0.38 | 0.43 | 0.3703 | 0.62 | 0.86 | 0.4693 | 0.57 | 0.26 | 0.0314 | |
A1 = minor allele, A2 = major allele, BETA = Beta coefficients, Chr = chromosome, HWE = Hardy–Weinberg equilibrium, MAF = minor allele frequency, MMSE = Mini-Mental State Examination, SE = standard error.
Analysis was obtained after adjustment for covariates including age, gender, and education. P values of < 0.0005 are shown in bold.
SNP-SNP interaction models identified by the GMDR method with adjustment for age, gender, and education.
| Best interaction model | Testing accuracy (%) | P value |
|---|---|---|
| 68.72 | ||
| 67.40 |
GMDR = generalized multifactor dimensionality reduction.
P value was based on 1,000 permutations. Analysis was obtained after adjustment for covariates including age, gender, and education. P values of < 0.05 are shown in bold.
Multivariable logistic regression analysis for the ADAMTS9 rs9985304 and ADAMTS9 rs76346246 interaction model.
| Two-way interaction model | OR | 95% CI | P value |
|---|---|---|---|
| 1 | |||
| 0.11 | 0.03–0.36 | ||
| 0.37 | 0.17–0.79 | ||
| 0.20 | 0.11–0.37 |
CI = confidence interval, OR = odds ratio.
a Reference.
b Versus reference.
Analysis was obtained after adjustment for covariates including age, gender, and education. P values of < 0.05 are shown in bold.
Multivariable logistic regression analysis of SNP-age interaction models for four key SNPs within the ADAMTS9 gene.
| SNP-age interaction model | OR | 95% CI | P value |
|---|---|---|---|
| (a) | |||
| 1 | |||
| 0.76 | 0.45–1.28 | 0.3014 | |
| 4.90 | 1.82–13.16 | ||
| 1.30 | 0.67–2.55 | 0.4408 | |
| (b) | |||
| 1 | |||
| 1.18 | 0.50–2.75 | 0.7063 | |
| 6.51 | 3.08–13.73 | ||
| 2.67 | 1.35–5.26 | ||
| (c) | |||
| 1 | |||
| 0.86 | 0.40–1.86 | 0.7098 | |
| 4.86 | 2.36–9.98 | ||
| 2.05 | 1.08–3.88 | ||
| (d) | |||
| 1 | |||
| 0.71 | 0.33–1.56 | 0.3967 | |
| 3.11 | 1.52–6.39 | ||
| 1.65 | 0.85–3.21 | 0.1385 | |
CI = confidence interval, OR = odds ratio.
a Reference.
b Versus reference.
Analysis was obtained after adjustment for covariates including gender and education. P values of < 0.05 are shown in bold.