Literature DB >> 28225080

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.

Robert Hänsel-Hertsch1, Marco Di Antonio1,2, Shankar Balasubramanian1,2,3.   

Abstract

Single-stranded guanine-rich DNA sequences can fold into four-stranded DNA structures called G-quadruplexes (G4s) that arise from the self-stacking of two or more guanine quartets. There has been considerable recent progress in the detection and mapping of G4 structures in the human genome and in biologically relevant contexts. These advancements, many of which align with predictions made previously in computational studies, provide important new insights into the functions of G4 structures in, for example, the regulation of transcription and genome stability, and uncover their potential relevance for cancer therapy.

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Year:  2017        PMID: 28225080     DOI: 10.1038/nrm.2017.3

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  46 in total

1.  Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.

Authors:  Emilie Besnard; Amélie Babled; Laure Lapasset; Ollivier Milhavet; Hugues Parrinello; Christelle Dantec; Jean-Michel Marin; Jean-Marc Lemaitre
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

2.  Inhibition of telomerase by G-quartet DNA structures.

Authors:  A M Zahler; J R Williamson; T R Cech; D M Prescott
Journal:  Nature       Date:  1991-04-25       Impact factor: 49.962

3.  Telomerase recruitment by the telomere end binding protein-beta facilitates G-quadruplex DNA unfolding in ciliates.

Authors:  Katrin Paeschke; Stefan Juranek; Tomas Simonsson; Anne Hempel; Daniela Rhodes; Hans Joachim Lipps
Journal:  Nat Struct Mol Biol       Date:  2008-05-18       Impact factor: 15.369

4.  Regulation of gene expression by the BLM helicase correlates with the presence of G-quadruplex DNA motifs.

Authors:  Giang Huong Nguyen; Weiliang Tang; Ana I Robles; Richard P Beyer; Lucas T Gray; Judith A Welsh; Aaron J Schetter; Kensuke Kumamoto; Xin Wei Wang; Ian D Hickson; Nancy Maizels; Raymond J Monnat; Curtis C Harris
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

Review 5.  DNA secondary structures: stability and function of G-quadruplex structures.

Authors:  Matthew L Bochman; Katrin Paeschke; Virginia A Zakian
Journal:  Nat Rev Genet       Date:  2012-10-03       Impact factor: 53.242

6.  The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo.

Authors:  Cyril Ribeyre; Judith Lopes; Jean-Baptiste Boulé; Aurèle Piazza; Aurore Guédin; Virginia A Zakian; Jean-Louis Mergny; Alain Nicolas
Journal:  PLoS Genet       Date:  2009-05-08       Impact factor: 5.917

7.  Genetic instability triggered by G-quadruplex interacting Phen-DC compounds in Saccharomyces cerevisiae.

Authors:  Aurèle Piazza; Jean-Baptiste Boulé; Judith Lopes; Katie Mingo; Eric Largy; Marie-Paule Teulade-Fichou; Alain Nicolas
Journal:  Nucleic Acids Res       Date:  2010-03-11       Impact factor: 16.971

8.  Detection of G-quadruplex DNA in mammalian cells.

Authors:  Alexander Henderson; Yuliang Wu; Yu Chuan Huang; Elizabeth A Chavez; Jesse Platt; F Brad Johnson; Robert M Brosh; Dipankar Sen; Peter M Lansdorp
Journal:  Nucleic Acids Res       Date:  2013-10-24       Impact factor: 16.971

9.  G quadruplexes are genomewide targets of transcriptional helicases XPB and XPD.

Authors:  Lucas T Gray; Aarthy C Vallur; Johanna Eddy; Nancy Maizels
Journal:  Nat Chem Biol       Date:  2014-03-09       Impact factor: 15.040

10.  G-quadruplexes as novel cis-elements controlling transcription during embryonic development.

Authors:  Aldana P David; Ezequiel Margarit; Pablo Domizi; Claudia Banchio; Pablo Armas; Nora B Calcaterra
Journal:  Nucleic Acids Res       Date:  2016-01-14       Impact factor: 16.971

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  189 in total

1.  Molecular architecture of G-quadruplex structures generated on duplex Rif1-binding sequences.

Authors:  Hisao Masai; Naoko Kakusho; Rino Fukatsu; Yue Ma; Keisuke Iida; Yutaka Kanoh; Kazuo Nagasawa
Journal:  J Biol Chem       Date:  2018-09-14       Impact factor: 5.157

2.  Molecular Recognition of the Hybrid-2 Human Telomeric G-Quadruplex by Epiberberine: Insights into Conversion of Telomeric G-Quadruplex Structures.

Authors:  Clement Lin; Guanhui Wu; Kaibo Wang; Buket Onel; Saburo Sakai; Yong Shao; Danzhou Yang
Journal:  Angew Chem Int Ed Engl       Date:  2018-07-18       Impact factor: 15.336

3.  G-quadruplex structures formed by human telomeric DNA and C9orf72 hexanucleotide repeats.

Authors:  Changdong Liu; Yanyan Geng; Haitao Miao; Xiao Shi; Yingying You; Naining Xu; Bo Zhou; Guang Zhu
Journal:  Biophys Rev       Date:  2019-05-24

Review 4.  [Application of atomic force microscopy-based single molecule force spectroscopy in G-quadruplex studies].

Authors:  Wenjing Liu; Tong Sun; Ping Zhang; Lin Li; Junhong Lv; Bin Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-08-30

5.  Pif1 helicase unfolding of G-quadruplex DNA is highly dependent on sequence and reaction conditions.

Authors:  Alicia K Byrd; Matthew R Bell; Kevin D Raney
Journal:  J Biol Chem       Date:  2018-09-26       Impact factor: 5.157

6.  DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.

Authors:  Alessio De Magis; Stefano G Manzo; Marco Russo; Jessica Marinello; Rita Morigi; Olivier Sordet; Giovanni Capranico
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-27       Impact factor: 11.205

7.  Whole genome experimental maps of DNA G-quadruplexes in multiple species.

Authors:  Giovanni Marsico; Vicki S Chambers; Aleksandr B Sahakyan; Patrick McCauley; Jonathan M Boutell; Marco Di Antonio; Shankar Balasubramanian
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

8.  Biosensor-Surface Plasmon Resonance: Label-Free Method for Investigation of Small Molecule-Quadruplex Nucleic Acid Interactions.

Authors:  Ananya Paul; Caterina Musetti; Rupesh Nanjunda; W David Wilson
Journal:  Methods Mol Biol       Date:  2019

9.  Electrophoretic Mobility Shift Assay and Dimethyl Sulfate Footprinting for Characterization of G-Quadruplexes and G-Quadruplex-Protein Complexes.

Authors:  Buket Onel; Guanhui Wu; Daekyu Sun; Clement Lin; Danzhou Yang
Journal:  Methods Mol Biol       Date:  2019

Review 10.  Sub1/PC4, a multifaceted factor: from transcription to genome stability.

Authors:  Miguel Garavís; Olga Calvo
Journal:  Curr Genet       Date:  2017-05-31       Impact factor: 3.886

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