Literature DB >> 28193880

Spatial and temporal dynamics of superspreading events in the 2014-2015 West Africa Ebola epidemic.

Max S Y Lau1, Benjamin Douglas Dalziel2,3, Sebastian Funk4, Amanda McClelland5, Amanda Tiffany6, Steven Riley7, C Jessica E Metcalf8, Bryan T Grenfell8,9.   

Abstract

The unprecedented scale of the Ebola outbreak in Western Africa (2014-2015) has prompted an explosion of efforts to understand the transmission dynamics of the virus and to analyze the performance of possible containment strategies. Models have focused primarily on the reproductive numbers of the disease that represent the average number of secondary infections produced by a random infectious individual. However, these population-level estimates may conflate important systematic variation in the number of cases generated by infected individuals, particularly found in spatially localized transmission and superspreading events. Although superspreading features prominently in first-hand narratives of Ebola transmission, its dynamics have not been systematically characterized, hindering refinements of future epidemic predictions and explorations of targeted interventions. We used Bayesian model inference to integrate individual-level spatial information with other epidemiological data of community-based (undetected within clinical-care systems) cases and to explicitly infer distribution of the cases generated by each infected individual. Our results show that superspreaders play a key role in sustaining onward transmission of the epidemic, and they are responsible for a significant proportion ([Formula: see text]61%) of the infections. Our results also suggest age as a key demographic predictor for superspreading. We also show that community-based cases may have progressed more rapidly than those notified within clinical-care systems, and most transmission events occurred in a relatively short distance (with median value of 2.51 km). Our results stress the importance of characterizing superspreading of Ebola, enhance our current understanding of its spatiotemporal dynamics, and highlight the potential importance of targeted control measures.

Entities:  

Keywords:  Bayesian inference; Ebola; offspring distribution; superspreading

Mesh:

Year:  2017        PMID: 28193880      PMCID: PMC5338479          DOI: 10.1073/pnas.1614595114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  The construction and analysis of epidemic trees with reference to the 2001 UK foot-and-mouth outbreak.

Authors:  D T Haydon; M Chase-Topping; D J Shaw; L Matthews; J K Friar; J Wilesmith; M E J Woolhouse
Journal:  Proc Biol Sci       Date:  2003-01-22       Impact factor: 5.349

2.  Measles metapopulation dynamics: a gravity model for epidemiological coupling and dynamics.

Authors:  Yingcun Xia; Ottar N Bjørnstad; Bryan T Grenfell
Journal:  Am Nat       Date:  2004-07-08       Impact factor: 3.926

3.  Transmission network of the 2014-2015 Ebola epidemic in Sierra Leone.

Authors:  Wan Yang; Wenyi Zhang; David Kargbo; Ruifu Yang; Yong Chen; Zeliang Chen; Abdul Kamara; Brima Kargbo; Sasikiran Kandula; Alicia Karspeck; Chao Liu; Jeffrey Shaman
Journal:  J R Soc Interface       Date:  2015-11-06       Impact factor: 4.118

4.  Effect of Ebola progression on transmission and control in Liberia.

Authors:  Dan Yamin; Shai Gertler; Martial L Ndeffo-Mbah; Laura A Skrip; Mosoka Fallah; Tolbert G Nyenswah; Frederick L Altice; Alison P Galvani
Journal:  Ann Intern Med       Date:  2015-01-06       Impact factor: 25.391

5.  The role of superspreading in Middle East respiratory syndrome coronavirus (MERS-CoV) transmission.

Authors:  A J Kucharski; C L Althaus
Journal:  Euro Surveill       Date:  2015-06-25

6.  Under-reporting of notifiable infectious disease hospitalizations in a health board region in Ireland: room for improvement?

Authors:  E D Brabazon; A O'Farrell; C A Murray; M W Carton; P Finnegan
Journal:  Epidemiol Infect       Date:  2007-03-30       Impact factor: 2.451

7.  West African Ebola epidemic after one year--slowing but not yet under control.

Authors:  Junerlyn Agua-Agum; Archchun Ariyarajah; Bruce Aylward; Isobel M Blake; Richard Brennan; Anne Cori; Christl A Donnelly; Ilaria Dorigatti; Christopher Dye; Tim Eckmanns; Neil M Ferguson; Pierre Formenty; Christophe Fraser; Erika Garcia; Tini Garske; Wes Hinsley; David Holmes; Stéphane Hugonnet; Swathi Iyengar; Thibaut Jombart; Ravi Krishnan; Sascha Meijers; Harriet L Mills; Yasmine Mohamed; Gemma Nedjati-Gilani; Emily Newton; Pierre Nouvellet; Louise Pelletier; Devin Perkins; Steven Riley; Maria Sagrado; Johannes Schnitzler; Dirk Schumacher; Anita Shah; Maria D Van Kerkhove; Olivia Varsaneux; Niluka Wijekoon Kannangarage
Journal:  N Engl J Med       Date:  2014-12-24       Impact factor: 91.245

8.  Improving burial practices and cemetery management during an Ebola virus disease epidemic - Sierra Leone, 2014.

Authors:  Carrie F Nielsen; Sarah Kidd; Ansumana R M Sillah; Edward Davis; Jonathan Mermin; Peter H Kilmarx
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2015-01-16       Impact factor: 17.586

9.  Ebola superspreading.

Authors:  Christian L Althaus
Journal:  Lancet Infect Dis       Date:  2015-04-19       Impact factor: 25.071

10.  Epidemiology: dimensions of superspreading.

Authors:  Alison P Galvani; Robert M May
Journal:  Nature       Date:  2005-11-17       Impact factor: 49.962

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  51 in total

1.  A mechanistic spatio-temporal framework for modelling individual-to-individual transmission-With an application to the 2014-2015 West Africa Ebola outbreak.

Authors:  Max S Y Lau; Gavin J Gibson; Hola Adrakey; Amanda McClelland; Steven Riley; Jon Zelner; George Streftaris; Sebastian Funk; Jessica Metcalf; Benjamin D Dalziel; Bryan T Grenfell
Journal:  PLoS Comput Biol       Date:  2017-10-30       Impact factor: 4.475

2.  The RAPIDD Ebola forecasting challenge: Model description and synthetic data generation.

Authors:  Marco Ajelli; Qian Zhang; Kaiyuan Sun; Stefano Merler; Laura Fumanelli; Gerardo Chowell; Lone Simonsen; Cecile Viboud; Alessandro Vespignani
Journal:  Epidemics       Date:  2017-09-20       Impact factor: 4.396

3.  Multiple Incursions and Recurrent Epidemic Fade-Out of H3N2 Canine Influenza A Virus in the United States.

Authors:  Ian E H Voorhees; Benjamin D Dalziel; Amy Glaser; Edward J Dubovi; Pablo R Murcia; Sandra Newbury; Kathy Toohey-Kurth; Shuo Su; Divya Kriti; Harm Van Bakel; Laura B Goodman; Christian Leutenegger; Edward C Holmes; Colin R Parrish
Journal:  J Virol       Date:  2018-07-31       Impact factor: 5.103

4.  An open-access database of infectious disease transmission trees to explore superspreader epidemiology.

Authors:  Juliana C Taube; Paige B Miller; John M Drake
Journal:  PLoS Biol       Date:  2022-06-22       Impact factor: 9.593

Review 5.  Considerations for use of Ebola vaccine during an emergency response.

Authors:  Jenny A Walldorf; Emily A Cloessner; Terri B Hyde; Adam MacNeil
Journal:  Vaccine       Date:  2017-09-07       Impact factor: 3.641

6.  An Exploration of the Spatiotemporal and Demographic Patterns of Ebola Virus Disease Epidemic in West Africa Using Open Access Data Sources.

Authors:  Vasile A Suchar; Noha Aziz; Amanda Bowe; Aran Burke; Michelle M Wiest
Journal:  Appl Geogr       Date:  2017-12-06

7.  Identifying spatio-temporal dynamics of Ebola in Sierra Leone using virus genomes.

Authors:  Kyle B Gustafson; Joshua L Proctor
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

8.  Estimating the number of secondary Ebola cases resulting from an unsafe burial and risk factors for transmission during the West Africa Ebola epidemic.

Authors:  Amanda Tiffany; Benjamin D Dalziel; Hilary Kagume Njenge; Ginger Johnson; Roselyn Nugba Ballah; Daniel James; Abdoulaye Wone; Juliet Bedford; Amanda McClelland
Journal:  PLoS Negl Trop Dis       Date:  2017-06-22

9.  Variability in Intrahousehold Transmission of Ebola Virus, and Estimation of the Household Secondary Attack Rate.

Authors:  Judith R Glynn; Hilary Bower; Sembia Johnson; Cecilia Turay; Daniel Sesay; Saidu H Mansaray; Osman Kamara; Alie Joshua Kamara; Mohammed S Bangura; Francesco Checchi
Journal:  J Infect Dis       Date:  2018-01-04       Impact factor: 5.226

10.  Contacts of healthcare workers, patients and visitors in general wards in Singapore.

Authors:  L Jiang; H L Ng; H J Ho; Y S Leo; K Prem; A R Cook; M I Chen
Journal:  Epidemiol Infect       Date:  2017-09-08       Impact factor: 4.434

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