Literature DB >> 28951016

The RAPIDD Ebola forecasting challenge: Model description and synthetic data generation.

Marco Ajelli1, Qian Zhang2, Kaiyuan Sun2, Stefano Merler3, Laura Fumanelli3, Gerardo Chowell4, Lone Simonsen5, Cecile Viboud6, Alessandro Vespignani7.   

Abstract

The Ebola forecasting challenge organized by the Research and Policy for Infectious Disease Dynamics (RAPIDD) program of the Fogarty International Center relies on synthetic disease datasets generated by numerical simulations of a highly detailed spatially-structured agent-based model. We discuss here the architecture and technical steps of the challenge, leading to datasets that mimic as much as possible the data collection, reporting, and communication process experienced in the 2014-2015 West African Ebola outbreak. We provide a detailed discussion of the model's definition, the epidemiological scenarios' construction, synthetic patient database generation and the data communication platform used during the challenge. Finally we offer a number of considerations and takeaways concerning the extension and scalability of synthetic challenges to other infectious diseases.
Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Computational modeling; Ebola; Forecast

Mesh:

Year:  2017        PMID: 28951016      PMCID: PMC5860927          DOI: 10.1016/j.epidem.2017.09.001

Source DB:  PubMed          Journal:  Epidemics        ISSN: 1878-0067            Impact factor:   4.396


  28 in total

1.  Assessing the international spreading risk associated with the 2014 west african ebola outbreak.

Authors:  Marcelo F C Gomes; Ana Pastore Y Piontti; Luca Rossi; Dennis Chao; Ira Longini; M Elizabeth Halloran; Alessandro Vespignani
Journal:  PLoS Curr       Date:  2014-09-02

2.  Estimating the future number of cases in the Ebola epidemic--Liberia and Sierra Leone, 2014-2015.

Authors:  Martin I Meltzer; Charisma Y Atkins; Scott Santibanez; Barbara Knust; Brett W Petersen; Elizabeth D Ervin; Stuart T Nichol; Inger K Damon; Michael L Washington
Journal:  MMWR Suppl       Date:  2014-09-26

3.  Dynamics and control of Ebola virus transmission in Montserrado, Liberia: a mathematical modelling analysis.

Authors:  Joseph A Lewnard; Martial L Ndeffo Mbah; Jorge A Alfaro-Murillo; Frederick L Altice; Luke Bawo; Tolbert G Nyenswah; Alison P Galvani
Journal:  Lancet Infect Dis       Date:  2014-10-23       Impact factor: 25.071

4.  Strategies for containing Ebola in West Africa.

Authors:  Abhishek Pandey; Katherine E Atkins; Jan Medlock; Natasha Wenzel; Jeffrey P Townsend; James E Childs; Tolbert G Nyenswah; Martial L Ndeffo-Mbah; Alison P Galvani
Journal:  Science       Date:  2014-10-30       Impact factor: 47.728

5.  Ebola virus disease among children in West Africa.

Authors:  Junerlyn Agua-Agum; Archchun Ariyarajah; Isobel M Blake; Anne Cori; Christl A Donnelly; Ilaria Dorigatti; Christopher Dye; Tim Eckmanns; Neil M Ferguson; Robert A Fowler; Christophe Fraser; Tini Garske; Wes Hinsley; Thibaut Jombart; Harriet L Mills; Srinivas Murthy; Gemma Nedjati Gilani; Pierre Nouvellet; Louise Pelletier; Steven Riley; Dirk Schumacher; Anita Shah; Maria D Van Kerkhove
Journal:  N Engl J Med       Date:  2015-03-26       Impact factor: 91.245

6.  Controlling the last known cluster of Ebola virus disease - Liberia, January-February 2015.

Authors:  Tolbert Nyenswah; Mosoka Fallah; Sonpon Sieh; Karsor Kollie; Moses Badio; Alvin Gray; Priscilla Dilah; Marnijina Shannon; Stanley Duwor; Chikwe Ihekweazu; Thierry Cordier-Lassalle; Thierry Cordier-Lasalle; Shivam A Shinde; Esther Hamblion; Gloria Davies-Wayne; Murugan Ratnesh; Christopher Dye; Jonathan S Yoder; Peter McElroy; Brooke Hoots; Athalia Christie; John Vertefeuille; Sonja J Olsen; A Scott Laney; Joyce J Neal; Sirin Yaemsiri; Thomas R Navin; Stewart Coulter; Paran Pordell; Terrence Lo; Carl Kinkade; Frank Mahoney
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2015-05-15       Impact factor: 17.586

7.  Under-reporting and case fatality estimates for emerging epidemics.

Authors:  Katherine E Atkins; Natasha S Wenzel; Martial Ndeffo-Mbah; Frederick L Altice; Jeffrey P Townsend; Alison P Galvani
Journal:  BMJ       Date:  2015-03-16

8.  Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study.

Authors:  Junerlyn Agua-Agum; Archchun Ariyarajah; Bruce Aylward; Luke Bawo; Pepe Bilivogui; Isobel M Blake; Richard J Brennan; Amy Cawthorne; Eilish Cleary; Peter Clement; Roland Conteh; Anne Cori; Foday Dafae; Benjamin Dahl; Jean-Marie Dangou; Boubacar Diallo; Christl A Donnelly; Ilaria Dorigatti; Christopher Dye; Tim Eckmanns; Mosoka Fallah; Neil M Ferguson; Lena Fiebig; Christophe Fraser; Tini Garske; Lice Gonzalez; Esther Hamblion; Nuha Hamid; Sara Hersey; Wes Hinsley; Amara Jambei; Thibaut Jombart; David Kargbo; Sakoba Keita; Michael Kinzer; Fred Kuti George; Beatrice Godefroy; Giovanna Gutierrez; Niluka Kannangarage; Harriet L Mills; Thomas Moller; Sascha Meijers; Yasmine Mohamed; Oliver Morgan; Gemma Nedjati-Gilani; Emily Newton; Pierre Nouvellet; Tolbert Nyenswah; William Perea; Devin Perkins; Steven Riley; Guenael Rodier; Marc Rondy; Maria Sagrado; Camelia Savulescu; Ilana J Schafer; Dirk Schumacher; Thomas Seyler; Anita Shah; Maria D Van Kerkhove; C Samford Wesseh; Zabulon Yoti
Journal:  PLoS Med       Date:  2016-11-15       Impact factor: 11.069

9.  After Ebola in West Africa--Unpredictable Risks, Preventable Epidemics.

Authors:  Junerlyn Agua-Agum; Benedetta Allegranzi; Archchun Ariyarajah; R Bruce Aylward; Isobel M Blake; Philippe Barboza; Daniel Bausch; Richard J Brennan; Peter Clement; Pasqualina Coffey; Anne Cori; Christl A Donnelly; Ilaria Dorigatti; Patrick Drury; Kara Durski; Christopher Dye; Tim Eckmanns; Neil M Ferguson; Christophe Fraser; Erika Garcia; Tini Garske; Alex Gasasira; Céline Gurry; Esther Hamblion; Wes Hinsley; Robert Holden; David Holmes; Stéphane Hugonnet; Giovanna Jaramillo Gutierrez; Thibaut Jombart; Edward Kelley; Ravi Santhana; Nuha Mahmoud; Harriet L Mills; Yasmine Mohamed; Emmanuel Musa; Dhamari Naidoo; Gemma Nedjati-Gilani; Emily Newton; Ian Norton; Pierre Nouvellet; Devin Perkins; Mark Perkins; Steven Riley; Dirk Schumacher; Anita Shah; Minh Tang; Olivia Varsaneux; Maria D Van Kerkhove
Journal:  N Engl J Med       Date:  2016-08-11       Impact factor: 91.245

10.  The 2014 Ebola virus disease outbreak in Pujehun, Sierra Leone: epidemiology and impact of interventions.

Authors:  Marco Ajelli; Stefano Parlamento; David Bome; Atiba Kebbi; Andrea Atzori; Clara Frasson; Giovanni Putoto; Dante Carraro; Stefano Merler
Journal:  BMC Med       Date:  2015-11-26       Impact factor: 8.775

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  4 in total

1.  The RAPIDD ebola forecasting challenge: Synthesis and lessons learnt.

Authors:  Cécile Viboud; Kaiyuan Sun; Robert Gaffey; Marco Ajelli; Laura Fumanelli; Stefano Merler; Qian Zhang; Gerardo Chowell; Lone Simonsen; Alessandro Vespignani
Journal:  Epidemics       Date:  2017-08-26       Impact factor: 4.396

2.  The future of influenza forecasts.

Authors:  Cécile Viboud; Alessandro Vespignani
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-08       Impact factor: 11.205

3.  Shifting the Paradigm: The Dress-COV Telegram Bot as a Tool for Participatory Medicine.

Authors:  Michela Franchini; Stefania Pieroni; Nicola Martini; Andrea Ripoli; Dante Chiappino; Francesca Denoth; Michael Norman Liebman; Sabrina Molinaro; Daniele Della Latta
Journal:  Int J Environ Res Public Health       Date:  2020-11-26       Impact factor: 3.390

4.  Epidemic tracking and forecasting: Lessons learned from a tumultuous year.

Authors:  Roni Rosenfeld; Ryan J Tibshirani
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 12.779

  4 in total

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