| Literature DB >> 28190782 |
Jasmine Y Young1, John D Westbrook2, Zukang Feng2, Raul Sala2, Ezra Peisach2, Thomas J Oldfield3, Sanchayita Sen3, Aleksandras Gutmanas3, David R Armstrong3, John M Berrisford3, Li Chen2, Minyu Chen4, Luigi Di Costanzo2, Dimitris Dimitropoulos2, Guanghua Gao2, Sutapa Ghosh2, Swanand Gore3, Vladimir Guranovic2, Pieter M S Hendrickx3, Brian P Hudson2, Reiko Igarashi4, Yasuyo Ikegawa4, Naohiro Kobayashi4, Catherine L Lawson2, Yuhe Liang2, Steve Mading5, Lora Mak3, M Saqib Mir3, Abhik Mukhopadhyay3, Ardan Patwardhan3, Irina Persikova2, Luana Rinaldi3, Eduardo Sanz-Garcia3, Monica R Sekharan2, Chenghua Shao2, G Jawahar Swaminathan3, Lihua Tan2, Eldon L Ulrich5, Glen van Ginkel3, Reiko Yamashita4, Huanwang Yang2, Marina A Zhuravleva2, Martha Quesada2, Gerard J Kleywegt3, Helen M Berman2, John L Markley5, Haruki Nakamura4, Sameer Velankar3, Stephen K Burley6.
Abstract
OneDep, a unified system for deposition, biocuration, and validation of experimentally determined structures of biological macromolecules to the PDB archive, has been developed as a global collaboration by the worldwide PDB (wwPDB) partners. This new system was designed to ensure that the wwPDB could meet the evolving archiving requirements of the scientific community over the coming decades. OneDep unifies deposition, biocuration, and validation pipelines across all wwPDB, EMDB, and BMRB deposition sites with improved focus on data quality and completeness in these archives, while supporting growth in the number of depositions and increases in their average size and complexity. In this paper, we describe the design, functional operation, and supporting infrastructure of the OneDep system, and provide initial performance assessments. Published by Elsevier Ltd.Entities:
Keywords: 3D macromolecular structure; PDB; Protein Data Bank; biocuration; data archiving; data deposition; research data; structural biology; validation; wwPDB
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Year: 2017 PMID： 28190782 PMCID： PMC5360273 DOI： 10.1016/j.str.2017.01.004
Source DB: PubMed Journal: Structure ISSN： 0969-2126 Impact factor: 5.006