Literature DB >> 15299647

xdlMAPMAN and xdlDATAMAN - programs for reformatting, analysis and manipulation of biomacromolecular electron-density maps and reflection data sets.

G J Kleywegt1, T A Jones.   

Abstract

Two user-friendly computer programs are described for use in macromolecular X-ray crystallography, xdlMAPMAN provides an interface for electron-density map exchange between some of the most commonly used phase refinement, structure refinement and model- building programs. In addition, it contains several options to analyse and abstract such maps. xdlDATAMAN provides similar functionality for the analysis and manipulation of macromolecular reflection data sets. Both programs have a simple graphical user interface, and their source code has been put into the public domain.

Entities:  

Year:  1996        PMID: 15299647     DOI: 10.1107/S0907444995014983

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  118 in total

1.  The X-ray structure of a chitinase from the pathogenic fungus Coccidioides immitis.

Authors:  T Hollis; A F Monzingo; K Bortone; S Ernst; R Cox; J D Robertus
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

2.  Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.

Authors:  E Warkentin; B Mamat; M Sordel-Klippert; M Wicke; R K Thauer; M Iwata; S Iwata; U Ermler; S Shima
Journal:  EMBO J       Date:  2001-12-03       Impact factor: 11.598

3.  Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution.

Authors:  U Mueller; H Schübel; M Sprinzl; U Heinemann
Journal:  RNA       Date:  1999-05       Impact factor: 4.942

4.  Deep trefoil knot implicated in RNA binding found in an archaebacterial protein.

Authors:  Thomas I Zarembinski; Youngchang Kim; Kelly Peterson; Dinesh Christendat; Akil Dharamsi; Cheryl H Arrowsmith; Aled M Edwards; Andrzej Joachimiak
Journal:  Proteins       Date:  2003-02-01

5.  A Hoogsteen base pair embedded in undistorted B-DNA.

Authors:  Jun Aishima; Rossitza K Gitti; Joyce E Noah; Hin Hark Gan; Tamar Schlick; Cynthia Wolberger
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

6.  The 2.3-angstrom structure of porcine circovirus 2.

Authors:  Reza Khayat; Nicholas Brunn; Jeffrey A Speir; John M Hardham; Robert G Ankenbauer; Anette Schneemann; John E Johnson
Journal:  J Virol       Date:  2011-06-01       Impact factor: 5.103

7.  The X-ray structure of the NAD-dependent 5,10-methylenetetrahydrofolate dehydrogenase from Saccharomyces cerevisiae.

Authors:  A F Monzingo; A Breksa; S Ernst; D R Appling; J D Robertus
Journal:  Protein Sci       Date:  2000-07       Impact factor: 6.725

8.  Flexible DNA bending in HU-DNA cocrystal structures.

Authors:  Kerren K Swinger; Kathryn M Lemberg; Ying Zhang; Phoebe A Rice
Journal:  EMBO J       Date:  2003-07-15       Impact factor: 11.598

9.  Mycobacterium tuberculosis chaperonin 10 heptamers self-associate through their biologically active loops.

Authors:  Michael M Roberts; Alun R Coker; Gianluca Fossati; Paolo Mascagni; Anthony R M Coates; Steve P Wood
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

10.  Improving the thermal stability of cellobiohydrolase Cel7A from Hypocrea jecorina by directed evolution.

Authors:  Frits Goedegebuur; Lydia Dankmeyer; Peter Gualfetti; Saeid Karkehabadi; Henrik Hansson; Suvamay Jana; Vicky Huynh; Bradley R Kelemen; Paulien Kruithof; Edmund A Larenas; Pauline J M Teunissen; Jerry Ståhlberg; Christina M Payne; Colin Mitchinson; Mats Sandgren
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.