Literature DB >> 28188674

Microexons: discovery, regulation, and function.

Dmytro Ustianenko1, Sebastien M Weyn-Vanhentenryck1, Chaolin Zhang1.   

Abstract

The importance of RNA splicing in numerous cellular processes is well established. However, an underappreciated aspect is the ability of the spliceosome to recognize a set of very small (3-30 nucleotide, 1-10 amino acid) exons named microexons. Despite their small size, microexons and their regulation through alternative splicing have now been shown to play critical roles in protein and system function. Here we review the discovery of microexons over time and the mechanisms by which their splicing is regulated, including recent progress made through deep RNA sequencing. We also discuss the functional role of microexons in biology and disease. WIREs RNA 2017, 8:e1418. doi: 10.1002/wrna.1418 For further resources related to this article, please visit the WIREs website.
© 2017 Wiley Periodicals, Inc.

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Year:  2017        PMID: 28188674      PMCID: PMC5863539          DOI: 10.1002/wrna.1418

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  64 in total

1.  Nova regulates brain-specific splicing to shape the synapse.

Authors:  Jernej Ule; Aljaz Ule; Joanna Spencer; Alan Williams; Jing-Shan Hu; Melissa Cline; Hui Wang; Tyson Clark; Claire Fraser; Matteo Ruggiu; Barry R Zeeberg; David Kane; John N Weinstein; John Blume; Robert B Darnell
Journal:  Nat Genet       Date:  2005-07-24       Impact factor: 38.330

2.  Another mechanism for creating diversity in gamma-aminobutyrate type A receptors: RNA splicing directs expression of two forms of gamma 2 phosphorylation site.

Authors:  P Whiting; R M McKernan; L L Iversen
Journal:  Proc Natl Acad Sci U S A       Date:  1990-12       Impact factor: 11.205

3.  Computational discovery of internal micro-exons.

Authors:  Natalia Volfovsky; Brian J Haas; Steven L Salzberg
Journal:  Genome Res       Date:  2003-06       Impact factor: 9.043

4.  Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators.

Authors:  Qinghong Yan; Sebastien M Weyn-Vanhentenryck; Jie Wu; Steven A Sloan; Ye Zhang; Kenian Chen; Jia Qian Wu; Ben A Barres; Chaolin Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-03       Impact factor: 11.205

5.  Polypeptide variation in an N-CAM extracellular immunoglobulin-like fold is developmentally regulated through alternative splicing.

Authors:  S J Small; S L Haines; R A Akeson
Journal:  Neuron       Date:  1988-12       Impact factor: 17.173

6.  A 5' splice site-proximal enhancer binds SF1 and activates exon bridging of a microexon.

Authors:  T Carlo; R Sierra; S M Berget
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

7.  Alternative splicing of the histone demethylase LSD1/KDM1 contributes to the modulation of neurite morphogenesis in the mammalian nervous system.

Authors:  Cristina Zibetti; Antonio Adamo; Claudia Binda; Federico Forneris; Emanuela Toffolo; Chiara Verpelli; Enrico Ginelli; Andrea Mattevi; Carlo Sala; Elena Battaglioli
Journal:  J Neurosci       Date:  2010-02-17       Impact factor: 6.167

Review 8.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

9.  Essential roles for the splicing regulator nSR100/SRRM4 during nervous system development.

Authors:  Mathieu Quesnel-Vallières; Manuel Irimia; Sabine P Cordes; Benjamin J Blencowe
Journal:  Genes Dev       Date:  2015-04-01       Impact factor: 11.361

10.  OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds.

Authors:  Jie Wu; Olga Anczuków; Adrian R Krainer; Michael Q Zhang; Chaolin Zhang
Journal:  Nucleic Acids Res       Date:  2013-04-09       Impact factor: 16.971

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  13 in total

1.  Mechanisms of Neuronal Alternative Splicing and Strategies for Therapeutic Interventions.

Authors:  Eduardo Javier Lopez Soto; Michael J Gandal; Thomas Gonatopoulos-Pournatzis; Elizabeth A Heller; Diou Luo; Sika Zheng
Journal:  J Neurosci       Date:  2019-10-16       Impact factor: 6.167

2.  Alternative splicing regulation of membrane trafficking genes during myogenesis.

Authors:  Emma R Hinkle; Hannah J Wiedner; Eduardo V Torres; Micaela Jackson; Adam J Black; R Eric Blue; Sarah E Harris; Bryan B Guzman; Gabrielle M Gentile; Eunice Y Lee; Yi-Hsuan Tsai; Joel Parker; Daniel Dominguez; Jimena Giudice
Journal:  RNA       Date:  2022-01-26       Impact factor: 4.942

3.  RBFOX2-regulated TEAD1 alternative splicing plays a pivotal role in Hippo-YAP signaling.

Authors:  Sunkyung Choi; Hyo Seong Lee; Namjoon Cho; Inyoung Kim; Seongmin Cheon; Chungoo Park; Eun-Mi Kim; Wantae Kim; Kee K Kim
Journal:  Nucleic Acids Res       Date:  2022-08-26       Impact factor: 19.160

4.  Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data.

Authors:  Jeremy R B Newman; Patrick Concannon; Manuel Tardaguila; Ana Conesa; Lauren M McIntyre
Journal:  G3 (Bethesda)       Date:  2018-08-30       Impact factor: 3.154

5.  HGF-induced migration depends on the PI(3,4,5)P3-binding microexon-spliced variant of the Arf6 exchange factor cytohesin-1.

Authors:  Colin D H Ratcliffe; Nadeem Siddiqui; Paula P Coelho; Nancy Laterreur; Tumini N Cookey; Nahum Sonenberg; Morag Park
Journal:  J Cell Biol       Date:  2018-11-07       Impact factor: 10.539

6.  MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development.

Authors:  Guillermo E Parada; Roberto Munita; Ilias Georgakopoulos-Soares; Hugo J R Fernandes; Veronika R Kedlian; Emmanouil Metzakopian; Maria Estela Andres; Eric A Miska; Martin Hemberg
Journal:  Genome Biol       Date:  2021-01-22       Impact factor: 13.583

7.  Ultra-deep sequencing reveals pre-mRNA splicing as a sequence driven high-fidelity process.

Authors:  Derrick J Reynolds; Klemens J Hertel
Journal:  PLoS One       Date:  2019-10-03       Impact factor: 3.240

8.  SRRM4 Expands the Repertoire of Circular RNAs by Regulating Microexon Inclusion.

Authors:  Vanessa M Conn; Marta Gabryelska; Shashikanth Marri; Brett W Stringer; Rebecca J Ormsby; Timothy Penn; Santosh Poonnoose; Ganessan Kichenadasse; Simon J Conn
Journal:  Cells       Date:  2020-11-16       Impact factor: 6.600

9.  First Identification of RNA-Binding Proteins That Regulate Alternative Exons in the Dystrophin Gene.

Authors:  Julie Miro; Anne-Laure Bougé; Eva Murauer; Emmanuelle Beyne; Dylan Da Cunha; Mireille Claustres; Michel Koenig; Sylvie Tuffery-Giraud
Journal:  Int J Mol Sci       Date:  2020-10-21       Impact factor: 5.923

Review 10.  Alternative Splicing and DNA Damage Response in Plants.

Authors:  Barbara Anna Nimeth; Stefan Riegler; Maria Kalyna
Journal:  Front Plant Sci       Date:  2020-02-19       Impact factor: 6.627

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