Literature DB >> 28188519

Improving Proteome Coverage and Sample Recovery with Enhanced FASP (eFASP) for Quantitative Proteomic Experiments.

Jonathan Erde1, Rachel R Ogorzalek Loo2, Joseph A Loo3,4.   

Abstract

Enhanced Filter Aided Sample Preparation (eFASP) incorporates plastics passivation and digestion-enhancing surfactants into the traditional FASP workflow to reduce sample loss and increase hydrophobic protein representation in qualitative and quantitative proteomics experiments. Resulting protein digests are free of contaminants and can be analyzed directly by LC-MS.

Entities:  

Keywords:  Ammonium deoxycholate; Detergent; Enhanced filter aided sample preparation; Quantitative proteomics

Mesh：

Substances：

Year:  2017        PMID： 28188519      PMCID： PMC6205185          DOI： 10.1007/978-1-4939-6747-6_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  14 in total

1.  Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method.

Authors:  Jacek R Wiśniewski; Dorota F Zielinska; Matthias Mann
Journal:  Anal Biochem       Date:  2010-12-06       Impact factor: 3.365

2.  Sample preparation and digestion for proteomic analyses using spin filters.

Authors:  Linda L Manza; Sheryl L Stamer; Amy-Joan L Ham; Simona G Codreanu; Daniel C Liebler
Journal:  Proteomics       Date:  2005-05       Impact factor: 3.984

3.  Spin filter-based sample preparation for shotgun proteomics.

Authors:  Daniel C Liebler; Amy-Joan L Ham
Journal:  Nat Methods       Date:  2009-11       Impact factor: 28.547

4.  A "de-streaking" method for two-dimensional electrophoresis using the reducing agent tris(2-carboxyethyl)-phosphine hydrochloride and alkylating agent vinylpyridine.

Authors:  Fengju Bai; Sheng Liu; Frank A Witzmann
Journal:  Proteomics       Date:  2005-05       Impact factor: 3.984

5.  Evaluation of the application of sodium deoxycholate to proteomic analysis of rat hippocampal plasma membrane.

Authors:  Jian Zhou; Tieyang Zhou; Rui Cao; Zhen Liu; Jianying Shen; Ping Chen; Xianchun Wang; Songping Liang
Journal:  J Proteome Res       Date:  2006-10       Impact factor: 4.466

6.  Sodium-deoxycholate-assisted tryptic digestion and identification of proteolytically resistant proteins.

Authors:  Yong Lin; Jian Zhou; Deng Bi; Ping Chen; Xianchun Wang; Songping Liang
Journal:  Anal Biochem       Date:  2008-03-14       Impact factor: 3.365

7.  Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants.

Authors:  Takeshi Masuda; Natsumi Saito; Masaru Tomita; Yasushi Ishihama
Journal:  Mol Cell Proteomics       Date:  2009-09-18       Impact factor: 5.911

8.  Removal of detergents from protein digests for mass spectrometry analysis.

Authors:  Yee-Guide Yeung; Edward Nieves; Ruth Hogue Angeletti; E Richard Stanley
Journal:  Anal Biochem       Date:  2008-08-03       Impact factor: 3.365

9.  A new deuterated alkylating agent for quantitative proteomics.

Authors:  Roberto Sebastiano; Attilio Citterio; Marta Lapadula; Pier Giorgio Righetti
Journal:  Rapid Commun Mass Spectrom       Date:  2003       Impact factor: 2.419

10.  Enhanced FASP (eFASP) to increase proteome coverage and sample recovery for quantitative proteomic experiments.

Authors:  Jonathan Erde; Rachel R Ogorzalek Loo; Joseph A Loo
Journal:  J Proteome Res       Date:  2014-03-06       Impact factor: 4.466
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  8 in total

1.  Filter-Based Protein Digestion (FPD): A Detergent-Free and Scaffold-Based Strategy for TMT Workflows.

Authors:  Ekaterina Stepanova; Steven P Gygi; Joao A Paulo
Journal:  J Proteome Res       Date:  2018-02-13       Impact factor: 4.466

2.  Identification of MS-Cleavable and Noncleavable Chemically Cross-Linked Peptides with MetaMorpheus.

Authors:  Lei Lu; Robert J Millikin; Stefan K Solntsev; Zach Rolfs; Mark Scalf; Michael R Shortreed; Lloyd M Smith
Journal:  J Proteome Res       Date:  2018-06-11       Impact factor: 4.466

3.  Proteome Analysis Using Gel-LC-MS/MS.

Authors:  Aaron R Goldman; Lynn A Beer; Hsin-Yao Tang; Peter Hembach; Delaine Zayas-Bazan; David W Speicher
Journal:  Curr Protoc Protein Sci       Date:  2019-06-10

4.  Surfactant and Chaotropic Agent Assisted Sequential Extraction/On-Pellet Digestion (SCAD) for Enhanced Proteomics.

Authors:  Fengfei Ma; Fabao Liu; Wei Xu; Lingjun Li
Journal:  J Proteome Res       Date:  2018-07-09       Impact factor: 4.466

5.  Platelet proteome dynamics in hibernating 13-lined ground squirrels.

Authors:  Scott Cooper; Phillip A Wilmarth; Jennifer M Cunliffe; John Klimek; Jiaqing Pang; Samuel Tassi Yunga; Jessica Minnier; Ashok Reddy; Larry David; Joseph E Aslan
Journal:  Physiol Genomics       Date:  2021-10-22       Impact factor: 3.107

6.  MS/MS in silico subtraction-based proteomic profiling as an approach to facilitate disease gene discovery: application to lens development and cataract.

Authors:  Sandeep Aryal; Deepti Anand; Francisco G Hernandez; Bailey A T Weatherbee; Hongzhan Huang; Ashok P Reddy; Phillip A Wilmarth; Larry L David; Salil A Lachke
Journal:  Hum Genet       Date:  2019-12-03       Impact factor: 4.132

7.  Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces.

Authors:  Maryam Baniasad; Yongseok Kim; Michael Shaffer; Anice Sabag-Daigle; Ikaia Leleiwi; Rebecca A Daly; Brian M M Ahmer; Kelly C Wrighton; Vicki H Wysocki
Journal:  Anal Bioanal Chem       Date:  2022-02-01       Impact factor: 4.478

8.  Leveraging Immonium Ions for Targeting Acyl-Lysine Modifications in Proteomic Datasets.

Authors:  John M Muroski; Janine Y Fu; Hong Hanh Nguyen; Rachel R Ogorzalek Loo; Joseph A Loo
Journal:  Proteomics       Date:  2020-09-25       Impact factor: 3.984
  8 in total

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