Literature DB >> 18713617

Removal of detergents from protein digests for mass spectrometry analysis.

Yee-Guide Yeung1, Edward Nieves, Ruth Hogue Angeletti, E Richard Stanley.   

Abstract

Detergents are commonly used for the extraction of hydrophobic proteins and must be removed for sensitive detection of peptides by mass spectrometry. We demonstrate that ethyl acetate is able to extract octylglycoside from a protease digest without loss of peptides or interference with the peptide mass spectral profile. Ethyl acetate extraction was also found to reduce interference by sodium dodecyl sulfate, Nonidet P-40, or Triton X-100 in the mass spectrometry analysis.

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Year:  2008        PMID: 18713617      PMCID: PMC2584337          DOI: 10.1016/j.ab.2008.07.034

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  9 in total

1.  Use of detergents to increase selectivity of immunoprecipitation of tyrosine phosphorylated peptides prior to identification by MALDI quadrupole-TOF MS.

Authors:  Guoan Zhang; Thomas A Neubert
Journal:  Proteomics       Date:  2006-01       Impact factor: 3.984

Review 2.  2D-LC/MS techniques for the identification of proteins in highly complex mixtures.

Authors:  Edgar Nägele; Martin Vollmer; Patric Hörth; Cornelia Vad
Journal:  Expert Rev Proteomics       Date:  2004-06       Impact factor: 3.940

3.  Optimization of mass spectrometry-compatible surfactants for shotgun proteomics.

Authors:  Emily I Chen; Daniel Cociorva; Jeremy L Norris; John R Yates
Journal:  J Proteome Res       Date:  2007-05-27       Impact factor: 4.466

Review 4.  The biological impact of mass-spectrometry-based proteomics.

Authors:  Benjamin F Cravatt; Gabriel M Simon; John R Yates
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

5.  Improvement of in-gel digestion protocol for peptide mass fingerprinting by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  H Katayama; T Nagasu; Y Oda
Journal:  Rapid Commun Mass Spectrom       Date:  2001       Impact factor: 2.419

6.  Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-beta-D-maltoside as an additive for gel-based membrane proteomics.

Authors:  Hiroyuki Katayama; Tsuyoshi Tabata; Yasushi Ishihama; Toshitaka Sato; Yoshiya Oda; Takeshi Nagasu
Journal:  Rapid Commun Mass Spectrom       Date:  2004       Impact factor: 2.419

7.  Effects of common surfactants on protein digestion and matrix-assisted laser desorption/ionization mass spectrometric analysis of the digested peptides using two-layer sample preparation.

Authors:  Nan Zhang; Liang Li
Journal:  Rapid Commun Mass Spectrom       Date:  2004       Impact factor: 2.419

8.  Acid-labile surfactant improves in-sodium dodecyl sulfate polyacrylamide gel protein digestion for matrix-assisted laser desorption/ionization mass spectrometric peptide mapping.

Authors:  Eiko Nomura; Kazuhiro Katsuta; Tomoko Ueda; Michinori Toriyama; Tatsuya Mori; Naoyuki Inagaki
Journal:  J Mass Spectrom       Date:  2004-02       Impact factor: 1.982

9.  Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis.

Authors:  Takeshi Masuda; Masaru Tomita; Yasushi Ishihama
Journal:  J Proteome Res       Date:  2008-02       Impact factor: 4.466

  9 in total
  27 in total

1.  Monitoring protein expression in whole-cell extracts by targeted label- and standard-free LC-MS/MS.

Authors:  Katharina Bluemlein; Markus Ralser
Journal:  Nat Protoc       Date:  2011-05-26       Impact factor: 13.491

2.  Improving Proteome Coverage and Sample Recovery with Enhanced FASP (eFASP) for Quantitative Proteomic Experiments.

Authors:  Jonathan Erde; Rachel R Ogorzalek Loo; Joseph A Loo
Journal:  Methods Mol Biol       Date:  2017

3.  Convenient and rapid removal of detergent from glycolipids in detergent-resistant membrane microdomains.

Authors:  Yusuke Suzuki; Kazuya Kabayama
Journal:  J Lipid Res       Date:  2012-01-03       Impact factor: 5.922

4.  Branching network of proteinaceous filaments within the parasitophorous vacuole of Encephalitozoon cuniculi and Encephalitozoon hellem.

Authors:  Kaya Ghosh; Eddie Nieves; Patrick Keeling; Jean-Francois Pombert; Philipp P Henrich; Ann Cali; Louis M Weiss
Journal:  Infect Immun       Date:  2011-01-10       Impact factor: 3.441

5.  Receptor-type protein-tyrosine phosphatase ζ is a functional receptor for interleukin-34.

Authors:  Sayan Nandi; Mario Cioce; Yee-Guide Yeung; Edward Nieves; Lydia Tesfa; Haishan Lin; Amy W Hsu; Robert Halenbeck; Hui-Yong Cheng; Solen Gokhan; Mark F Mehler; E Richard Stanley
Journal:  J Biol Chem       Date:  2013-06-06       Impact factor: 5.157

6.  Functional expression of the PorAH channel from Corynebacterium glutamicum in cell-free expression systems: implications for the role of the naturally occurring mycolic acid modification.

Authors:  Parthasarathi Rath; Pascal Demange; Olivier Saurel; Marielle Tropis; Mamadou Daffé; Volker Dötsch; Alexandre Ghazi; Frank Bernhard; Alain Milon
Journal:  J Biol Chem       Date:  2011-07-28       Impact factor: 5.157

7.  Comparison of bottom-up proteomic approaches for LC-MS analysis of complex proteomes.

Authors:  Leigh A Weston; Kerry M Bauer; Amanda B Hummon
Journal:  Anal Methods       Date:  2013-09-21       Impact factor: 2.896

8.  Optimization and comparison of bottom-up proteomic sample preparation for early-stage Xenopus laevis embryos.

Authors:  Elizabeth H Peuchen; Liangliang Sun; Norman J Dovichi
Journal:  Anal Bioanal Chem       Date:  2016-04-30       Impact factor: 4.142

9.  Mutational and functional analysis of Large in a novel CHO glycosylation mutant.

Authors:  Jennifer T Aguilan; Subha Sundaram; Edward Nieves; Pamela Stanley
Journal:  Glycobiology       Date:  2009-05-21       Impact factor: 4.313

10.  Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications.

Authors:  Jian-Ying Zhou; Geoffrey P Dann; Tujin Shi; Lu Wang; Xiaoli Gao; Dian Su; Carrie D Nicora; Anil K Shukla; Ronald J Moore; Tao Liu; David G Camp; Richard D Smith; Wei-Jun Qian
Journal:  Anal Chem       Date:  2012-03-02       Impact factor: 6.986

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