Literature DB >> 28180304

RNA helicase DDX19 stabilizes ribosomal elongation and termination complexes.

Tatiana Mikhailova1, Ekaterina Shuvalova1, Alexander Ivanov1,2, Denis Susorov1,2, Alexey Shuvalov1, Peter M Kolosov1,3, Elena Alkalaeva1.   

Abstract

The human DEAD-box RNA-helicase DDX19 functions in mRNA export through the nuclear pore complex. The yeast homolog of this protein, Dbp5, has been reported to participate in translation termination. Using a reconstituted mammalian in vitro translation system, we show that the human protein DDX19 is also important for translation termination. It is associated with the fraction of translating ribosomes. We show that DDX19 interacts with pre-termination complexes (preTCs) in a nucleotide-dependent manner. Furthermore, DDX19 increases the efficiency of termination complex (TC) formation and the peptide release in the presence of eukaryotic release factors. Using the eRF1(AGQ) mutant protein or a non-hydrolysable analog of GTP to inhibit subsequent peptidyl-tRNA hydrolysis, we reveal that the activation of translation termination by DDX19 occurs during the stop codon recognition. This activation is a result of DDX19 binding to preTC and a concomitant stabilization of terminating ribosomes. Moreover, we show that DDX19 stabilizes ribosome complexes with translation elongation factors eEF1 and eEF2. Taken together, our findings reveal that the human RNA helicase DDX19 actively participates in protein biosynthesis.

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Year:  2017        PMID: 28180304      PMCID: PMC5605241          DOI: 10.1093/nar/gkw1239

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  42 in total

1.  Control of mRNA export and translation termination by inositol hexakisphosphate requires specific interaction with Gle1.

Authors:  Abel R Alcázar-Román; Timothy A Bolger; Susan R Wente
Journal:  J Biol Chem       Date:  2010-04-06       Impact factor: 5.157

Review 2.  The DEAD-box protein family of RNA helicases.

Authors:  Olivier Cordin; Josette Banroques; N Kyle Tanner; Patrick Linder
Journal:  Gene       Date:  2005-12-07       Impact factor: 3.688

3.  The DEAD-box RNA helicase Dbp5 functions in translation termination.

Authors:  Thomas Gross; Anja Siepmann; Dorotheé Sturm; Merle Windgassen; John J Scarcelli; Matthias Seedorf; Charles N Cole; Heike Krebber
Journal:  Science       Date:  2007-02-02       Impact factor: 47.728

4.  The DEAD-box protein Dbp5p is required to dissociate Mex67p from exported mRNPs at the nuclear rim.

Authors:  Mette K Lund; Christine Guthrie
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

Review 5.  RNA helicases at work: binding and rearranging.

Authors:  Eckhard Jankowsky
Journal:  Trends Biochem Sci       Date:  2011-01       Impact factor: 13.807

6.  Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition.

Authors:  A Seit-Nebi; L Frolova; J Justesen; L Kisselev
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

7.  Optimal translational termination requires C4 lysyl hydroxylation of eRF1.

Authors:  Tianshu Feng; Atsushi Yamamoto; Sarah E Wilkins; Elizaveta Sokolova; Luke A Yates; Martin Münzel; Pooja Singh; Richard J Hopkinson; Roman Fischer; Matthew E Cockman; Jake Shelley; David C Trudgian; Johannes Schödel; James S O McCullagh; Wei Ge; Benedikt M Kessler; Robert J Gilbert; Ludmila Y Frolova; Elena Alkalaeva; Peter J Ratcliffe; Christopher J Schofield; Mathew L Coleman
Journal:  Mol Cell       Date:  2014-01-30       Impact factor: 17.970

8.  New insights into stop codon recognition by eRF1.

Authors:  Sandra Blanchet; Michelle Rowe; Tobias Von der Haar; Céline Fabret; Stéphane Demais; Mark J Howard; Olivier Namy
Journal:  Nucleic Acids Res       Date:  2015-03-03       Impact factor: 16.971

9.  The DEXD/H-box RNA helicase DDX19 is regulated by an {alpha}-helical switch.

Authors:  Ruairi Collins; Tobias Karlberg; Lari Lehtiö; Patrick Schütz; Susanne van den Berg; Lars-Göran Dahlgren; Martin Hammarström; Johan Weigelt; Herwig Schüler
Journal:  J Biol Chem       Date:  2009-02-25       Impact factor: 5.157

10.  Structural basis for stop codon recognition in eukaryotes.

Authors:  Alan Brown; Sichen Shao; Jason Murray; Ramanujan S Hegde; V Ramakrishnan
Journal:  Nature       Date:  2015-08-05       Impact factor: 49.962

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  20 in total

1.  Polyadenylate-binding protein-interacting proteins PAIP1 and PAIP2 affect translation termination.

Authors:  Alexandr Ivanov; Ekaterina Shuvalova; Tatiana Egorova; Alexey Shuvalov; Elizaveta Sokolova; Nikita Bizyaev; Ivan Shatsky; Ilya Terenin; Elena Alkalaeva
Journal:  J Biol Chem       Date:  2019-04-16       Impact factor: 5.157

Review 2.  Nonsense suppression therapies in human genetic diseases.

Authors:  Patrícia Martins-Dias; Luísa Romão
Journal:  Cell Mol Life Sci       Date:  2021-03-22       Impact factor: 9.261

3.  Nsp1 of SARS-CoV-2 stimulates host translation termination.

Authors:  Alexey Shuvalov; Ekaterina Shuvalova; Nikita Biziaev; Elizaveta Sokolova; Konstantin Evmenov; Nikolay Pustogarov; Aleksandra Arnautova; Vera Matrosova; Tatiana Egorova; Elena Alkalaeva
Journal:  RNA Biol       Date:  2021-11-18       Impact factor: 4.652

Review 4.  DEAD-ly Affairs: The Roles of DEAD-Box Proteins on HIV-1 Viral RNA Metabolism.

Authors:  Shringar Rao; Tokameh Mahmoudi
Journal:  Front Cell Dev Biol       Date:  2022-06-13

Review 5.  Emerging molecular functions and novel roles for the DEAD-box protein Dbp5/DDX19 in gene expression.

Authors:  Arvind Arul Nambi Rajan; Ben Montpetit
Journal:  Cell Mol Life Sci       Date:  2020-11-17       Impact factor: 9.261

6.  Eukaryotic translational termination efficiency is influenced by the 3' nucleotides within the ribosomal mRNA channel.

Authors:  Andrew G Cridge; Caillan Crowe-McAuliffe; Suneeth F Mathew; Warren P Tate
Journal:  Nucleic Acids Res       Date:  2018-02-28       Impact factor: 16.971

7.  CTELS: A Cell-Free System for the Analysis of Translation Termination Rate.

Authors:  Kseniya A Lashkevich; Valeriya I Shlyk; Artem S Kushchenko; Vadim N Gladyshev; Elena Z Alkalaeva; Sergey E Dmitriev
Journal:  Biomolecules       Date:  2020-06-16

8.  Structural and functional analysis of mRNA export regulation by the nuclear pore complex.

Authors:  Daniel H Lin; Ana R Correia; Sarah W Cai; Ferdinand M Huber; Claudia A Jette; André Hoelz
Journal:  Nat Commun       Date:  2018-06-13       Impact factor: 14.919

9.  Depletion of mRNA export regulator DBP5/DDX19, GLE1 or IPPK that is a key enzyme for the production of IP6, resulting in differentially altered cytoplasmic mRNA expression and specific cell defect.

Authors:  Masumi Okamura; Yasutaka Yamanaka; Maki Shigemoto; Yuya Kitadani; Yuhko Kobayashi; Taiho Kambe; Masaya Nagao; Issei Kobayashi; Katsuzumi Okumura; Seiji Masuda
Journal:  PLoS One       Date:  2018-05-10       Impact factor: 3.240

10.  Chemical genetic inhibition of DEAD-box proteins using covalent complementarity.

Authors:  Krister J Barkovich; Megan K Moore; Qi Hu; Kevan M Shokat
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

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