Literature DB >> 33205304

Emerging molecular functions and novel roles for the DEAD-box protein Dbp5/DDX19 in gene expression.

Arvind Arul Nambi Rajan1, Ben Montpetit2,3.   

Abstract

The DEAD-box protein (DBP) Dbp5, a member of the superfamily II (SFII) helicases, has multiple reported roles in gene expression. First identified as an essential regulator of mRNA export in Saccharomyces cerevisiae, the enzyme now has reported functions in non-coding RNA export, translation, transcription, and DNA metabolism. Localization of the protein to various cellular compartments (nucleoplasm, nuclear envelope, and cytoplasm) highlights the ability of Dbp5 to modulate different stages of the RNA lifecycle. While Dbp5 has been well studied for > 20 years, several critical questions remain regarding the mechanistic principles that govern Dbp5 localization, substrate selection, and functions in gene expression. This review aims to take a holistic view of the proposed functions of Dbp5 and evaluate models that accommodate current published data.

Entities:  

Keywords:  DBP5; DDX19; GLE1; Gene expression; NUP159; Nuclear pore complex; RNPase; mRNA export; mRNP

Mesh:

Substances:

Year:  2020        PMID: 33205304      PMCID: PMC7969391          DOI: 10.1007/s00018-020-03680-y

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  93 in total

1.  Control of mRNA export and translation termination by inositol hexakisphosphate requires specific interaction with Gle1.

Authors:  Abel R Alcázar-Román; Timothy A Bolger; Susan R Wente
Journal:  J Biol Chem       Date:  2010-04-06       Impact factor: 5.157

2.  Mechanism of ATP turnover inhibition in the EJC.

Authors:  Klaus H Nielsen; Hala Chamieh; Christian B F Andersen; Folmer Fredslund; Kristiane Hamborg; Hervé Le Hir; Gregers R Andersen
Journal:  RNA       Date:  2008-11-25       Impact factor: 4.942

3.  Dbp5p, a cytosolic RNA helicase, is required for poly(A)+ RNA export.

Authors:  S S Tseng; P L Weaver; Y Liu; M Hitomi; A M Tartakoff; T H Chang
Journal:  EMBO J       Date:  1998-05-01       Impact factor: 11.598

4.  Inositol hexakisphosphate and Gle1 activate the DEAD-box protein Dbp5 for nuclear mRNA export.

Authors:  Abel R Alcázar-Román; Elizabeth J Tran; Shuangli Guo; Susan R Wente
Journal:  Nat Cell Biol       Date:  2006-06-18       Impact factor: 28.824

5.  Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p.

Authors:  K Strässer; E Hurt
Journal:  Nature       Date:  2001-10-11       Impact factor: 49.962

6.  The mRNA export factor Gle1 and inositol hexakisphosphate regulate distinct stages of translation.

Authors:  Timothy A Bolger; Andrew W Folkmann; Elizabeth J Tran; Susan R Wente
Journal:  Cell       Date:  2008-08-22       Impact factor: 41.582

Review 7.  Looking back on the birth of DEAD-box RNA helicases.

Authors:  Patrick Linder; Frances V Fuller-Pace
Journal:  Biochim Biophys Acta       Date:  2013-03-29

8.  In vivo imaging of labelled endogenous β-actin mRNA during nucleocytoplasmic transport.

Authors:  David Grünwald; Robert H Singer
Journal:  Nature       Date:  2010-09-15       Impact factor: 49.962

9.  Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export.

Authors:  K Strässer; J Bassler; E Hurt
Journal:  J Cell Biol       Date:  2000-08-21       Impact factor: 10.539

10.  A nuclear role for the DEAD-box protein Dbp5 in tRNA export.

Authors:  Azra Lari; Arvind Arul Nambi Rajan; Rima Sandhu; Taylor Reiter; Rachel Montpetit; Barry P Young; Chris Jr Loewen; Ben Montpetit
Journal:  Elife       Date:  2019-08-27       Impact factor: 8.140

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  4 in total

1.  The nucleoporin Gle1 activates DEAD-box protein 5 (Dbp5) by promoting ATP binding and accelerating rate limiting phosphate release.

Authors:  Shawn Gray; Wenxiang Cao; Ben Montpetit; Enrique M De La Cruz
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

Review 2.  DEAD/H-Box Helicases in Immunity, Inflammation, Cell Differentiation, and Cell Death and Disease.

Authors:  Parimal Samir; Thirumala-Devi Kanneganti
Journal:  Cells       Date:  2022-05-11       Impact factor: 7.666

3.  Nuclear export of the pre-60S ribosomal subunit through single nuclear pores observed in real time.

Authors:  Jan Andreas Ruland; Annika Marie Krüger; Kerstin Dörner; Rohan Bhatia; Sabine Wirths; Daniel Poetes; Ulrike Kutay; Jan Peter Siebrasse; Ulrich Kubitscheck
Journal:  Nat Commun       Date:  2021-10-27       Impact factor: 14.919

Review 4.  Evolution and diversification of the nuclear pore complex.

Authors:  Alexandr A Makarov; Norma E Padilla-Mejia; Mark C Field
Journal:  Biochem Soc Trans       Date:  2021-08-27       Impact factor: 5.407

  4 in total

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