Literature DB >> 28175959

False-Positive Viability PCR Results: An Association with Microtubes.

Gemma Agustí1, Mariana Fittipaldi2, Francesc Codony3.   

Abstract

Currently, one of the most challenged points to expand the use of viability PCR technique is achieving the complete exclusion of dead cells amplification signals, thus avoiding the overestimation of live cells population. Considering that, and based on the hypothesis that DNA may be retained by microtube walls, the impact of the microtube was addressed on signals from live and heat-killed cells. A double-dye reagent, PEMAX™, which comprises a mix of photo-reactive azide forms of phenanthridium, was used in this work. We found that if both the incubation and the photoactivation steps are carried out in different microtubes, the dead cell signal is greatly reduced than when those steps are done in the same tube. Therefore, the strategy depicted in this study presents a simple and efficient step in minimizing false-positive signal when employing viability PCR.

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Year:  2017        PMID: 28175959     DOI: 10.1007/s00284-016-1189-3

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  12 in total

1.  Application of viability PCR to discriminate the infectivity of hepatitis A virus in food samples.

Authors:  L Moreno; R Aznar; G Sánchez
Journal:  Int J Food Microbiol       Date:  2015-02-16       Impact factor: 5.277

Review 2.  Novel approaches toward preferential detection of viable cells using nucleic acid amplification techniques.

Authors:  Andreas Nocker; Anne K Camper
Journal:  FEMS Microbiol Lett       Date:  2008-11-21       Impact factor: 2.742

3.  Denaturation and association of DNA sequences by certain polypropylene surfaces.

Authors:  B P Belotserkovskii; B H Johnston
Journal:  Anal Biochem       Date:  1997-09-05       Impact factor: 3.365

4.  Cell membrane integrity and distinguishing between metabolically active and inactive cells as a means of improving viability PCR.

Authors:  Francesc Codony; Gemma Agustí; Anna Allué-Guardia
Journal:  Mol Cell Probes       Date:  2015-03-20       Impact factor: 2.365

5.  Evaluation of viability-qPCR detection system on viable and dead Salmonella serovar Enteritidis.

Authors:  Elodie Barbau-Piednoir; Jacques Mahillon; Julie Pillyser; Wim Coucke; Nancy H Roosens; Nadine Botteldoorn
Journal:  J Microbiol Methods       Date:  2014-06-11       Impact factor: 2.363

6.  Determination of viable Salmonellae from potable and source water through PMA assisted qPCR.

Authors:  Gulshan Singh; Poornima Vajpayee; Saurabh Bhatti; Nirmala Ronnie; Nimish Shah; Peter McClure; Rishi Shanker
Journal:  Ecotoxicol Environ Saf       Date:  2013-04-26       Impact factor: 6.291

7.  Detection of viable Salmonella in lettuce by propidium monoazide real-time PCR.

Authors:  Ningjian Liang; Jin Dong; Laixin Luo; Yong Li
Journal:  J Food Sci       Date:  2011-04-07       Impact factor: 3.167

8.  Improving efficiency of viability-PCR for selective detection of live cells.

Authors:  Esther Nkuipou-Kenfack; Holger Engel; Sarah Fakih; Andreas Nocker
Journal:  J Microbiol Methods       Date:  2013-02-04       Impact factor: 2.363

Review 9.  Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification.

Authors:  Mariana Fittipaldi; Andreas Nocker; Francesc Codony
Journal:  J Microbiol Methods       Date:  2012-08-23       Impact factor: 2.363

10.  Development of a sensitive and specific qPCR assay in conjunction with propidium monoazide for enhanced detection of live Salmonella spp. in food.

Authors:  Baoguang Li; Jin-Qiang Chen
Journal:  BMC Microbiol       Date:  2013-12-01       Impact factor: 3.605

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  9 in total

1.  Optimization of a Viability PCR Method for the Detection of Listeria monocytogenes in Food Samples.

Authors:  Gemma Agustí; Mariana Fittipaldi; Francesc Codony
Journal:  Curr Microbiol       Date:  2018-02-12       Impact factor: 2.188

2.  Viability RT-qPCR Combined with Sodium Deoxycholate Pre-treatment for Selective Quantification of Infectious Viruses in Drinking Water Samples.

Authors:  Vu Duc Canh; Ikuro Kasuga; Hiroaki Furumai; Hiroyuki Katayama
Journal:  Food Environ Virol       Date:  2019-01-24       Impact factor: 2.778

3.  Improved sample treatment protocol for accurate detection of live Salmonella spp. in food samples by viability PCR.

Authors:  Mai Dinh Thanh; Gemma Agustí; Anneluise Mader; Bernd Appel; Francesc Codony
Journal:  PLoS One       Date:  2017-12-12       Impact factor: 3.240

4.  Monitoring Viable Cells of the Biological Control Agent Lactobacillus plantarum PM411 in Aerial Plant Surfaces by Means of a Strain-Specific Viability Quantitative PCR Method.

Authors:  Núria Daranas; Anna Bonaterra; Jesús Francés; Jordi Cabrefiga; Emilio Montesinos; Esther Badosa
Journal:  Appl Environ Microbiol       Date:  2018-05-01       Impact factor: 4.792

5.  Commentary: Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis.

Authors:  Gemma Agustí; Francesc Codony
Journal:  Front Cell Infect Microbiol       Date:  2018-06-20       Impact factor: 5.293

6.  Screening and identification of BP100 peptide conjugates active against Xylella fastidiosa using a viability-qPCR method.

Authors:  Aina Baró; Esther Badosa; Laura Montesinos; Lidia Feliu; Marta Planas; Emilio Montesinos; Anna Bonaterra
Journal:  BMC Microbiol       Date:  2020-07-29       Impact factor: 3.605

7.  Response: Commentary: Reducing Viability Bias in Analysis of Gut Microbiota in Preterm Infants at Risk of NEC and Sepsis.

Authors:  Gregory R Young; Darren L Smith; Nicholas D Embleton; Janet Elizabeth Berrington; Edward C Schwalbe; Stephen Paul Cummings; Christopher J van der Gast; Clare Lanyon
Journal:  Front Cell Infect Microbiol       Date:  2018-10-24       Impact factor: 5.293

8.  A microfluidic based biosensor for rapid detection of Salmonella in food products.

Authors:  Jiayu Liu; Ibrahem Jasim; Zhenyu Shen; Lu Zhao; Majed Dweik; Shuping Zhang; Mahmoud Almasri
Journal:  PLoS One       Date:  2019-05-14       Impact factor: 3.240

9.  Detection and Quantification Methods for Viable but Non-culturable (VBNC) Cells in Process Wash Water of Fresh-Cut Produce: Industrial Validation.

Authors:  Pilar Truchado; Maria I Gil; Mar Larrosa; Ana Allende
Journal:  Front Microbiol       Date:  2020-05-04       Impact factor: 5.640

  9 in total

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