Literature DB >> 28163791

Mechanobiology of Chromatin and the Nuclear Interior.

Stephen T Spagnol1, Travis J Armiger1, Kris Noel Dahl2.   

Abstract

The view of the cell nucleus has evolved from an isolated, static organelle to a dynamic structure integrated with other mechanical elements of the cell. Both dynamics and integration appear to contribute to a mechanical regulation of genome expression. Here, we review physical structures inside the nucleus at different length scales and the dynamic reorganization modulated by cellular forces. First, we discuss nuclear organization focusing on self-assembly and disassembly of DNA structures and various nuclear bodies. We then discuss the importance of connections from the chromatin fiber through the nuclear envelope to the rest of the cell as they relate to mechanobiology. Finally, we discuss how cell stimulation, both chemical and physical, can alter nuclear structures and ultimately cellular function in healthy cells and in some model diseases. The view of chromatin and nuclear bodies as mechanical entities integrated with force generation from the cytoskeleton combines polymer physics with cell biology and medicine.

Entities:  

Keywords:  Chromatin; Genome expression; Laminopathy; Nuclear mechanics; Nucleoskeleton; Reptation; Self-assembly

Year:  2016        PMID: 28163791      PMCID: PMC5289645          DOI: 10.1007/s12195-016-0444-9

Source DB:  PubMed          Journal:  Cell Mol Bioeng        ISSN: 1865-5025            Impact factor:   2.321


  107 in total

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Authors:  Annachiara De Sandre-Giovannoli; Rafaëlle Bernard; Pierre Cau; Claire Navarro; Jeanne Amiel; Irène Boccaccio; Stanislas Lyonnet; Colin L Stewart; Arnold Munnich; Martine Le Merrer; Nicolas Lévy
Journal:  Science       Date:  2003-04-17       Impact factor: 47.728

Review 2.  Gene expression and the myth of the average cell.

Authors:  Jeffrey M Levsky; Robert H Singer
Journal:  Trends Cell Biol       Date:  2003-01       Impact factor: 20.808

3.  Chromatin mobility is increased at sites of DNA double-strand breaks.

Authors:  P M Krawczyk; T Borovski; J Stap; T Cijsouw; R ten Cate; J P Medema; R Kanaar; N A P Franken; J A Aten
Journal:  J Cell Sci       Date:  2012-02-10       Impact factor: 5.285

4.  Nuclear stiffening and chromatin softening with progerin expression leads to an attenuated nuclear response to force.

Authors:  Elizabeth A Booth; Stephen T Spagnol; Turi A Alcoser; Kris Noel Dahl
Journal:  Soft Matter       Date:  2015-07-14       Impact factor: 3.679

5.  Nucleoskeleton mechanics at a glance.

Authors:  Kris Noel Dahl; Agnieszka Kalinowski
Journal:  J Cell Sci       Date:  2011-03-01       Impact factor: 5.285

6.  Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells.

Authors:  A Dhar; K Girdhar; D Singh; H Gelman; S Ebbinghaus; M Gruebele
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

7.  Mutant nuclear lamin A leads to progressive alterations of epigenetic control in premature aging.

Authors:  Dale K Shumaker; Thomas Dechat; Alexander Kohlmaier; Stephen A Adam; Matthew R Bozovsky; Michael R Erdos; Maria Eriksson; Anne E Goldman; Satya Khuon; Francis S Collins; Thomas Jenuwein; Robert D Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-31       Impact factor: 11.205

Review 8.  Chromatin features and the epigenetic regulation of pluripotency states in ESCs.

Authors:  Wee-Wei Tee; Danny Reinberg
Journal:  Development       Date:  2014-06       Impact factor: 6.868

Review 9.  Nuclear organization: taking a position on gene expression.

Authors:  Pamela K Geyer; Michael W Vitalini; Lori L Wallrath
Journal:  Curr Opin Cell Biol       Date:  2011-03-28       Impact factor: 8.382

10.  Angiogenesis interactome and time course microarray data reveal the distinct activation patterns in endothelial cells.

Authors:  Liang-Hui Chu; Esak Lee; Joel S Bader; Aleksander S Popel
Journal:  PLoS One       Date:  2014-10-16       Impact factor: 3.240

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  5 in total

1.  Nuclear deformation guides chromatin reorganization in cardiac development and disease.

Authors:  Benjamin Seelbinder; Soham Ghosh; Stephanie E Schneider; Adrienne K Scott; Alycia G Berman; Craig J Goergen; Kenneth B Margulies; Kenneth C Bedi; Eduard Casas; Alison R Swearingen; Justin Brumbaugh; Sarah Calve; Corey P Neu
Journal:  Nat Biomed Eng       Date:  2021-12-02       Impact factor: 29.234

Review 2.  DNA Mechanics and Topology.

Authors:  Sumitabha Brahmachari; John F Marko
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

3.  Multiple particle tracking analysis in isolated nuclei reveals the mechanical phenotype of leukemia cells.

Authors:  Diego Herráez-Aguilar; Elena Madrazo; Horacio López-Menéndez; Manuel Ramírez; Francisco Monroy; Javier Redondo-Muñoz
Journal:  Sci Rep       Date:  2020-04-21       Impact factor: 4.379

Review 4.  Job Opening for Nucleosome Mechanic: Flexibility Required.

Authors:  Mary Pitman; Daniël P Melters; Yamini Dalal
Journal:  Cells       Date:  2020-03-01       Impact factor: 6.600

5.  Quantifying site-specific chromatin mechanics and DNA damage response.

Authors:  Daniel B Whitefield; Stephen T Spagnol; Travis J Armiger; Li Lan; Kris Noel Dahl
Journal:  Sci Rep       Date:  2018-12-27       Impact factor: 4.379

  5 in total

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