Literature DB >> 24917497

Chromatin features and the epigenetic regulation of pluripotency states in ESCs.

Wee-Wei Tee1, Danny Reinberg1.   

Abstract

In pluripotent stem cells, the interplay between signaling cues, epigenetic regulators and transcription factors orchestrates developmental potency. Flexibility in gene expression control is imparted by molecular changes to the nucleosomes, the building block of chromatin. Here, we review the current understanding of the role of chromatin as a plastic and integrative platform to direct gene expression changes in pluripotent stem cells, giving rise to distinct pluripotent states. We will further explore the concept of epigenetic asymmetry, focusing primarily on histone stoichiometry and their associated modifications, that is apparent at both the nucleosome and chromosome-wide levels, and discuss the emerging importance of these asymmetric chromatin configurations in diversifying epigenetic states and their implications for cell fate control.
© 2014. Published by The Company of Biologists Ltd.

Keywords:  Chromatin; Epigenetic regulators; Nucleosomes; Pluripotency

Mesh:

Substances:

Year:  2014        PMID: 24917497      PMCID: PMC4050692          DOI: 10.1242/dev.096982

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  205 in total

1.  Genome-wide nucleosome positioning during embryonic stem cell development.

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Journal:  Nat Struct Mol Biol       Date:  2012-10-21       Impact factor: 15.369

2.  DNA and chromatin modification networks distinguish stem cell pluripotent ground states.

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3.  Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome.

Authors:  Abdenour Soufi; Greg Donahue; Kenneth S Zaret
Journal:  Cell       Date:  2012-11-15       Impact factor: 41.582

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5.  Foxa2 and H2A.Z mediate nucleosome depletion during embryonic stem cell differentiation.

Authors:  Zhaoyu Li; Paul Gadue; Kaifu Chen; Yang Jiao; Geetu Tuteja; Jonathan Schug; Wei Li; Klaus H Kaestner
Journal:  Cell       Date:  2012-12-21       Impact factor: 41.582

6.  Asymmetric division of Drosophila male germline stem cell shows asymmetric histone distribution.

Authors:  Vuong Tran; Cindy Lim; Jing Xie; Xin Chen
Journal:  Science       Date:  2012-11-02       Impact factor: 47.728

7.  Histone H2A.Z inheritance during the cell cycle and its impact on promoter organization and dynamics.

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Journal:  Nat Struct Mol Biol       Date:  2012-10-21       Impact factor: 15.369

8.  Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules.

Authors:  Andre J Faure; Dominic Schmidt; Stephen Watt; Petra C Schwalie; Michael D Wilson; Huiling Xu; Robert G Ramsay; Duncan T Odom; Paul Flicek
Journal:  Genome Res       Date:  2012-07-10       Impact factor: 9.043

9.  Influence of threonine metabolism on S-adenosylmethionine and histone methylation.

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Journal:  Science       Date:  2012-11-01       Impact factor: 47.728

Review 10.  Histone H2A variants in nucleosomes and chromatin: more or less stable?

Authors:  Clemens Bönisch; Sandra B Hake
Journal:  Nucleic Acids Res       Date:  2012-09-21       Impact factor: 16.971

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  42 in total

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Review 5.  Developing in 3D: the role of CTCF in cell differentiation.

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Journal:  Development       Date:  2018-03-22       Impact factor: 6.868

6.  Chaperone-mediated autophagy regulates the pluripotency of embryonic stem cells.

Authors:  Yi Xu; Yang Zhang; Juan C García-Cañaveras; Lili Guo; Mengyuan Kan; Sixiang Yu; Ian A Blair; Joshua D Rabinowitz; Xiaolu Yang
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Review 7.  Multiple levels of epigenetic control for bone biology and pathology.

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8.  Efficient derivation of stable primed pluripotent embryonic stem cells from bovine blastocysts.

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Review 10.  Choose Your Own Adventure: The Role of Histone Modifications in Yeast Cell Fate.

Authors:  Deepika Jaiswal; Rashi Turniansky; Erin M Green
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