Literature DB >> 28163340

Automated Tuning for Parameter Identification and Uncertainty Quantification in Multi-scale Coronary Simulations.

Justin S Tran1, Daniele E Schiavazzi1, Abhay B Ramachandra1, Andrew M Kahn2, Alison L Marsden1.   

Abstract

Atherosclerotic coronary artery disease, which can result in coronary artery stenosis, acute coronary artery occlusion, and eventually myocardial infarction, is a major cause of morbidity and mortality worldwide. Non-invasive characterization of coronary blood flow is important to improve understanding, prevention, and treatment of this disease. Computational simulations can now produce clinically relevant hemodynamic quantities using only non-invasive measurements, combining detailed three dimensional fluid mechanics with physiological models in a multiscale framework. These models, however, require specification of numerous input parameters and are typically tuned manually without accounting for uncertainty in the clinical data, hindering their application to large clinical studies. We propose an automatic, Bayesian, approach to parameter estimation based on adaptive Markov chain Monte Carlo sampling that assimilates non-invasive quantities commonly acquired in routine clinical care, quantifies the uncertainty in the estimated parameters and computes the confidence in local predicted hemodynamic indicators.

Entities:  

Keywords:  Coronary flow; data assimilation; hemodynamics; lumped boundary circulation models; multiscale cardiovascular simulation; parameter estimation; uncertainty quantification

Year:  2016        PMID: 28163340      PMCID: PMC5287494          DOI: 10.1016/j.compfluid.2016.05.015

Source DB:  PubMed          Journal:  Comput Fluids        ISSN: 0045-7930            Impact factor:   3.013


  28 in total

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  24 in total

1.  Uncertainty quantification of simulated biomechanical stimuli in coronary artery bypass grafts.

Authors:  Justin S Tran; Daniele E Schiavazzi; Andrew M Kahn; Alison L Marsden
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2.  A Distributed Lumped Parameter Model of Blood Flow.

Authors:  Mehran Mirramezani; Shawn C Shadden
Journal:  Ann Biomed Eng       Date:  2020-07-01       Impact factor: 3.934

3.  A generalized multi-resolution expansion for uncertainty propagation with application to cardiovascular modeling.

Authors:  D E Schiavazzi; A Doostan; G Iaccarino; A L Marsden
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4.  A Re-Engineered Software Interface and Workflow for the Open-Source SimVascular Cardiovascular Modeling Package.

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Journal:  J Biomech Eng       Date:  2018-02-01       Impact factor: 2.097

5.  Patient-Specific Simulations Reveal Significant Differences in Mechanical Stimuli in Venous and Arterial Coronary Grafts.

Authors:  Abhay B Ramachandra; Andrew M Kahn; Alison L Marsden
Journal:  J Cardiovasc Transl Res       Date:  2016-07-22       Impact factor: 4.132

6.  Predictive Modeling of Secondary Pulmonary Hypertension in Left Ventricular Diastolic Dysfunction.

Authors:  Karlyn K Harrod; Jeffrey L Rogers; Jeffrey A Feinstein; Alison L Marsden; Daniele E Schiavazzi
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7.  A computational bio-chemo-mechanical model of in vivo tissue-engineered vascular graft development.

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8.  Multilevel and multifidelity uncertainty quantification for cardiovascular hemodynamics.

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Review 9.  Physiology and coronary artery disease: emerging insights from computed tomography imaging based computational modeling.

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10.  The effects of clinically-derived parametric data uncertainty in patient-specific coronary simulations with deformable walls.

Authors:  Jongmin Seo; Daniele E Schiavazzi; Andrew M Kahn; Alison L Marsden
Journal:  Int J Numer Method Biomed Eng       Date:  2020-06-25       Impact factor: 2.747

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