Tomsmith O Unimuke1,2, Hitler Louis1,2, Ededet A Eno1,2, Ernest C Agwamba1,3, Adedapo S Adeyinka4. 1. Computational and Bio-Simulation Research Group, University of Calabar, Calabar 540004, Nigeria. 2. Department of Pure and Applied Chemistry, Faculty of Physical Sciences, University of Calabar, Calabar 540004, Nigeria. 3. Department of Chemical Sciences, Clifford University Owerrinta, Abia State 440001, Nigeria. 4. Research Centre for Synthesis and Catalysis, Department of Chemical Sciences, University of Johannesburg, Johannesburg 2006, South Africa.
Abstract
The application of plain cycloalkanes and heterocyclic derivatives in the synthesis of valuable natural products and pharmacologically active intermediates has increased tremendously in recent times with much attention being paid to the lower cycloalkane members. The structural and molecular properties of higher seven-membered and nonaromatic heterocyclic derivatives are less known despite their stable nature and vast application; thus, an insight into their structural and electronic properties is still needed. Appropriate quantum chemical calculations utilizing the ab initio (MP2) method, meta-hybrid (M06-2X) functional, and long-range-separated functionals (ωB97XD) have been utilized in this work to investigate the structural reactivity, stability, and behavior of substituents on cycloheptane (CHP) and its derivatives: azepane, oxepane, thiepane, fluorocycloheptane (FCHP), bromocycloheptane (BrCHP), and chlorocycloheptane (ClCHP). Molecular global reactivity descriptors such as Fukui function, frontier molecular orbitals (FMOs), and molecular electrostatic potential were computed and compared with lower members. The results of two population methods CHELPG and Atomic Dipole Corrected Hirshfeld Charges (ADCH) were equally compared to scrutinize the charge distribution in the molecules. The susceptibility of intramolecular interactions between the substituents and cycloalkane ring is revealed by natural bond orbital analysis and intramolecular weak interactions by the independent gradient model (IGM). Other properties such as atomic density of states, intrinsic bond strength index (IBSI), and dipole moments are considered. It is acclaimed that the strain effect is a major determinant effect in the energy balance of cyclic molecules; thus, the ring strain energies and validation of spectroscopic specificities with reference to the X-ray crystallographic data are also considered.
The application of plain cycloalkanes and heterocyclic derivatives in the synthesis of valuable natural products and pharmacologically active intermediates has increased tremendously in recent times with much attention being paid to the lower cycloalkane members. The structural and molecular properties of higher seven-membered and nonaromatic heterocyclic derivatives are less known despite their stable nature and vast application; thus, an insight into their structural and electronic properties is still needed. Appropriate quantum chemical calculations utilizing the ab initio (MP2) method, meta-hybrid (M06-2X) functional, and long-range-separated functionals (ωB97XD) have been utilized in this work to investigate the structural reactivity, stability, and behavior of substituents on cycloheptane (CHP) and its derivatives: azepane, oxepane, thiepane, fluorocycloheptane (FCHP), bromocycloheptane (BrCHP), and chlorocycloheptane (ClCHP). Molecular global reactivity descriptors such as Fukui function, frontier molecular orbitals (FMOs), and molecular electrostatic potential were computed and compared with lower members. The results of two population methods CHELPG and Atomic Dipole Corrected Hirshfeld Charges (ADCH) were equally compared to scrutinize the charge distribution in the molecules. The susceptibility of intramolecular interactions between the substituents and cycloalkane ring is revealed by natural bond orbital analysis and intramolecular weak interactions by the independent gradient model (IGM). Other properties such as atomic density of states, intrinsic bond strength index (IBSI), and dipole moments are considered. It is acclaimed that the strain effect is a major determinant effect in the energy balance of cyclic molecules; thus, the ring strain energies and validation of spectroscopic specificities with reference to the X-ray crystallographic data are also considered.
Heterocyclic or carbocyclic compounds, also known as heterocycles,
constitute a class of organic ring-membered compounds characterized
by the presence of at least two distinct elements, of which at least
one is a heteroatom. Heterocyclic compounds are similar to cyclic
organic compounds, but the presence of heteroatoms endows heterocyclic
compounds with physical and chemical properties that are quite distinct
from those of their carbon-ring analogues. When a carbon atom of a
seven-membered carbocycle is replaced by a heteroatom, a corresponding
seven-membered heterocyclic system is obtained depending on the hybridization
state (sp2 or sp3) and nature of the heterocycle.
By virtue of substitution with a heteroatom in the resulting system,
the electron density (ED) within the ring system is redistributed,
thus causing a significant change in the molecular behavior and properties
of the system, which enables further modification of several other
molecular properties like reactivity, optoelectronic properties, etc.
Hence, in the case of cycloheptane, in which all carbon atoms are
equivalent, the replacement of one carbon atom produces a fully saturated
heterocyclic system. Heterocyclic compounds are readily applicable
in the synthesis of naturally occurring pigments, vitamins, and antibiotics,
and some act as hallucinogens.[1,2]The most common
heterocyclic compounds are the five- or six-membered
rings containing heteroatoms of nitrogen (N), oxygen (O), and sulfur
(S). Over the years, much attention has been paid to the fully saturated
and unsaturated three- and four-membered rings because of their small
sizes and well-known reactive nature and uses as intermediates, but
the saturated and unsaturated seven-membered rings and higher members
are stable but less investigated. Recently, much attention has been
directed toward the unsaturated seven-membered ring systems due to
their application in biochemistry, solar cells and photovoltaics,
organic light-emitting diodes (OLEDs), and thin-film transistors.
Heterocyclic compounds, in general, have become an important pharmacophore
due to promising applications in medicine and nonlinear optics (NLO)
fields.[1,2] Thus, we have substituted one carbon atom
of cycloheptane with N, O, and S to obtain the corresponding heterocycles,
viz, azepane, oxepane, and thiepane, to computationally elucidate
their electronic properties, particularly reactivity and stability,
and compare these properties to the parent cycloheptane and halo-substituted
cycloheptane as well as other lower-member cyclic hydrocarbons using
appropriate density functional theory (DFT) methods.Some of
the reasons why the study of halo-substituted compounds
may be considered significant are the abundance of halogenated compounds
in natural products and pharmacologically active compounds, which
are increasingly being exploited. Several classes of halogenated compounds
have been successfully applied in the synthesis of paints, dyes, adhesives,
flame retardants, and solvents and the development of new materials.
Despite the halogenation process being accompanied by the use of toxic
chemicals, the application of halogens in the development of new products
and molecules is still being utilized. It has been reported that the
incorporation of halogens (carbon–halogen bond) increases the
oxidative and thermal stability, which results in a lowering of the
sensitivity of P450 toward oxidation.[3,4] It has also
been reported that the carbon–halogen bond increases the biological
membrane permeability of most compounds. Halogenated compounds are
essentially significant in agricultural applications, and halogenation
has been demonstrated to be an important tool for the development
of efficient agricultural products.[5]Electronic structure methods are accurate in investigating the
basic electronic properties of molecules, and these methods have been
utilized over the years to predict molecular behavior. The theoretical
conformational analysis of seven-membered rings, thiepane and 1,4-oxathiepane,
has long been reported.[6] Also, numerous
force fields were proposed to study the pseudorotational equilibria
of cycloheptane.[7] And most of the studies
conducted revealed that cycloheptane and its derivatives, such as
1,4-dioxepane, 1,3-dioxepane, 6,7-dihydro-SH-1, etc., mostly prefer
the chair, twist-chair, or twist-boat conformations depending on the
position and presence of a heteroatom or double bonds in the molecular
structure.[7,8] In another study conducted by Dillen,[9] a holistic conformational analysis of azepane,
oxepane, silepane, phosphepane, thiepane, and the azepanium cation
was carried out by high-level electronic structure calculations, and
the results compared appropriately with those of the well-known cycloheptane.
The twist-chair conformation was the most stable conformation reported
for the studied systems, and the chair conformation was mostly associated
with the transition state. This study also reported that the presence
of second-row heteroatoms lowers the relative energy of the boat conformations
in comparison to the chair conformations. The structural and conformational
stability of 1-chloromethyl-1-fluorosilacyclohexane has been reported,
and Raman and infrared vibrational spectroscopy were conducted using
the DFT/B3LYP/aug-cc-pVDZ and the MP2/aug-cc-pVDZ level of theory.
It was observed that 1-chloromethyl-1-fluorosilacyclohexane may exist
in 12 different conformations, of which the chair axial trans conformer
was found to be the most stable conformer.[10] It is worth noting that the aim of this study is not to investigate
the conformational behavior of the chosen systems. However, the above
citations have guided the understanding of the conformational behavior
of the chosen systems and facilitated their geometry optimization
to obtain the molecules to the correct energetic minima and conformation.Other relevant citations to this study may include the study of
10 molecules chosen to represent the symmetrically disubstituted formaldehyde
and thioformaldehyde investigated by ref (11) to elucidate their quantum chemical properties.
Five-membered heterocyclic substituents containing a single group
of 16 heteroatoms were taken into consideration to investigate the
influence of heteroatom rings on quantum molecular properties such
as dipole moment, frontier molecular orbital (MO), polarizabilities,
and energetic stability for these studied systems. More so, insight
from refs (12−15) has contributed significantly
to this work.To the best of our knowledge, the structural features
and vibrational
analysis of seven-membered nonaromatic heterocyclic compounds are
less developed; although these compounds are usually stable and some
have found practical application in pharmaceutical applications, insight
into the structural and electronic properties is still needed. Also,
the electronic, reactivity, and structural investigations of halogenated
seven-membered cycloalkane (cycloheptane) derivatives have not been
reported, and over the years, much attention has been paid to the
lower-member heterocyclic ring compounds and lower-member cycloalkanes
due to the paucity of the literature reported for these compounds.
Thus, considering the vast application of plain cycloalkanes and the
scarcity of research for these compounds, the theoretical reactivity
and structural investigation of cycloheptane and its derivatives [oxepane,
azepane, thiepane, fluorocycloheptane (FCHP), bromocycloheptane (BrCHP),
and chlorocycloheptane (ClCHP)] was conducted using the meta-hybrid
functional (M06-2X), long-range-separated functional (DFT/ωB97XD),
and ab initio (MP2) methods to explore the structural characteristics,
which might be helpful toward the advancement of research and application
of these compounds in various fields. The optimized molecular structures
of the compounds are presented in Figure . Understanding the intramolecular interactions
in molecules is essential for theoretical research and practical purposes;
thus, in this research, we attempted to explain the relationship between
the resonance stabilization energy exhibited in the form of donor–acceptor
interactions between the halogens and heteroatoms with the ring (the
influence of substitution on cycloheptane rings) through the evaluation
of electrostatic potential (ESP) distribution, natural bond orbital
analysis (NBO), and electron density distribution by noncovalent interactions
[independent gradient model (IGM)-based noncovalent interaction].
DFT calculations have been utilized in this work to explore global
reactivity descriptors, Fukui function, intrinsic bond strength index
(IBSI), atomic charges, validation of spectroscopic properties, and
elucidation of vibrational specificities again with the intention
of revealing how energy gap could influence the electronic properties
of the chosen compounds.
Figure 1
Optimized molecular structures of the studied
compounds (a) azepane,
(b) oxepane, (c) thiepane, (d) FCHP, (e) BrCHP (f) ClCHP, and (g)
CHP.
Optimized molecular structures of the studied
compounds (a) azepane,
(b) oxepane, (c) thiepane, (d) FCHP, (e) BrCHP (f) ClCHP, and (g)
CHP.
Computational Details
The full geometry optimization of the respective systems was performed
using the ab initio (MP2) method and the M06-2X method with the split-valence
6-311++G(d,p) and aug-cc-pVTZ basis sets using Gaussian 16.[16,17] Initial equilibrium structural minimization of the studied systems
was conducted with the help of molecular mechanics force field geometry
optimization computational module embedded in HyperChem 8.0 software.[18] It is evident from the literature that higher-member
cycloalkanes exist in diverse conformations. Therefore, to ensure
that the correct and most stable conformation is selected for studies
and in the exact energetic minima, a conformational search was conducted
using the search module of HyperChem to obtain the different conformations
for the modeled systems. The chair conformation was observed to be
the most stable conformer from energetic observations and thus was
selected for proper geometry optimization. This observation is in
line with several reports on the conformations of cycloheptane and
higher members, as cited in paragraph three of the Introduction section. The same computational approach was
used to ascertain that the optimized structures correspond to local
minima on the potential energy surface by conducting vibrational frequency
calculations on the optimized structures; no arbitrary frequencies
were observed, as shown in Tables S1–S7 of the Supporting Information (SI). For benchmarking and method
selection, geometry optimization was performed using the DFT/ωB97XD,
DFT/B3LYP, M06-2X, and MP2 methods using the 6-311++G(d,p) aug-cc-pVDZ,
and aug-ccpVTZ basis sets.[19,20] Following the approach
by refs (21−23), the ring strain energies of
the respective molecules with reference to their acyclic counterparts
were calculated. In all cases, the corrected ZPVE was utilized in
the ring strain calculation. The energies of all acyclic counterparts
were obtained by conducting ground-state equilibrium geometry optimizations
using the MP2 method and the M06-2X functional with the aug-cc-pVTZ
and 6-311++G(d,p) basis sets. Other surface and topological analyses
were conducted with Multiwfn 3.7 dev.[24] The independent gradient model (IGM) weak interaction fingerprint
plot and molecular electrostatic potential (ESP) isosurfaces were
rendered via the GNU plot and visual molecular dynamics (VMD) software,
respectively,[25] in conjunction with the
exported files from Multiwfn. Investigation of the stabilization energy
and charge transfer was conducted with the help of the NBO analysis
program, and the results were analyzed using the UCA-Fukui program.[26,27] Structural analysis such as bond length, angle, and vibrational
assignment as obtained from geometry optimization was achieved with
the help of Vibrational Energy Distribution Analysis software (VEDA
4.1).[28]
Results
and Discussion
Energies and Dipole Moment
To validate
the computational responsiveness of the studied systems to theoretical
methods, the energies of the studied systems were computed and compared
using the exchange–correlation functional (M06-2X) and range-separated
functional (ωB97XD) as well as ab initio (MP2) calculation,
as presented in Table . The energies and dipole moment obtained are very much comparable
even though quantitative incongruity is non-negligible. The values
of the calculated dipole moment were observed to fluctuate as the
level of theory was increased and revealed that thiepane possesses
the highest dipole moment compared to azepane and oxepane and that
BrCHP was more polar. Dipole moment (μ) is very crucial when
considering molecular stability in different electronic environments.
The order of the dipole moment is thiepane > oxepane > azepane
among
the heterocycles, while for the halo-substituted derivatives, the
order is BrCHP > ClCHP > FCHP. The comparable nature of these
results
is an indication of the accuracy and efficiency of the chosen computational
approach for this study.
Table 1
Total Energies (in
Hartree) and Dipole
Moment of the Studied Compounds
compounds
DFT/B3LYP SCF
energy (Hartree)
dipole moment (Debye)
DFT/ωB97XD SCF energy (Hartree)
dipole moment
(Debye)
M06-2X SCF energy
(Hartree)
dipole moment (Debye)
MP2 SCF energy (Hartree)
dipole moment (Debye)
azepane
–291.242427
1.15
–291.204586
1.24
–291.146194
1.25
–290.588428
1.25
oxepane
–311.110443
1.44
–311.067495
1.55
–311.014223
1.58
–310.44712
1.59
thiepane
–634.099848
1.93
–634.057711
1.99
–633.992997
1.95
–633.05895
1.99
FCHP
–374.464569
2.33
–374.421952
2.37
–374.358411
2.35
–373.70489
2.42
ClCHP
–734.832824
2.74
–734.788052
2.69
–734.717848
2.68
–733.690514
2.73
BrCHP
–2848.769627
2.87
–2848.753278
2.72
–2848.690151
2.82
–2846.67841
2.86
CHP
–275.208609
0.012
–275.175393
0.0049
–275.111237
0.0055
–274.561808
0.0054
Structural Properties
The molecular
geometries of the studied compounds have been determined experimentally
via the gas-phase electron diffraction method reported elsewhere.[29,30] The crystallographic data for the heterocyclic derivatives studied
in this work were obtained from the Cambridge Crystallographic Data
Centre (CCDC) as reported by refs (29, 30) (CCDC Numbers: 1116875 and 707207). The crystallographic data for
the halo-substituted derivatives and thiepane have not been reported;
however, their synthesis can be achieved via suitable cyclization
reactions of 1,6-disubstituted hexanes with diverse leaving groups
and suitable catalysts. Thiepane has been successfully synthesized
by the radical cyclization of 5-hexenethiol under photolytic conditions.
Several other synthetic approaches could be deployed to afford the
studied systems.[1,31] The crystal structure of azepane
and oxepane shows two nonequivalent units bonded by intermolecular
hydrogen bonds via the NH and O atoms, respectively. Having obtained
the stable geometry from DFT calculations, it would be interesting
to compare the modeled geometry to the available experimentally determined
geometry; thus, we compared our calculated geometrical data with the
experimental data by means of root mean square deviation (RMSD). The
calculated geometrical parameters of the gas phase for the heterocyclic
derivatives are presented in Table along with the X-ray diffraction (XRD) data obtained
from structural refinement. As observed, the average bond lengths
for the C–N (1.459 Ǻ), C–O (1.434 Ǻ),
C–S (1.842 Ǻ), and C–C (1.527 Ǻ)
bonds from experimental data are quite similar to the calculated data,
and the RMSD shows excellent conformity with the experimental values.
The results for the computed bond angles show an increasing angle
deviation in the range of 114.8–116.9° for C–C–C
bond angles, while C–C–H angles maintained the 109.5°
in most cases with a slight decrease from 109.49 to 107.9° as
a result of ring strain, which might result in the deviation from
the regular tetrahedral bond angle. The planarity of a molecule can
be assessed through its dihedral angles. In general, 0, 180, or 360°
dihedral angle indicates the presence of planarity in molecules. For
the studied molecules, the observed dihedral angles of −163
(C4–C1–C2–H14), −175.90 (C1–C2–C3–H15),
−156 (C2–C1–C4–H16), and −176 (C1–C2–C3–H15)
indicate significant out-of-plane distortions from planarity.
Table 2
Experimental and Calculated Geometric
Parameters for the Heterocyclic Derivatives Calculated at the M06-2X/6-311++G(d,p)
and the MP2/aug-cc-pVTZ Level of Theory
atoms
azepane (X-ray)
M06-2X/6-311++G(d,p)
MP2/aug-ccPVTZ
oxepane (X-ray)
M06-2X/6-311++G(d,p)
MP2/aug-ccPVTZ
thiepane (X-ray)
M06-2X/6-311++G(d,p)
MP2/aug-ccPVTZ
C1–C2
1.527
1.5335
1.5297
1.546
1.5283
1.5239
1.5391
1.5341
1.5303
C1–C4
1.527
1.5328
1.5289
1.510
1.5331
1.5285
1.5418
1.5368
1.5332
C2–C3
1.528
1.5297
1.5255
1.511
1.5389
1.5285
1.5348
1.5288
1.5253
C3–C5
1.526
1.5343
1.5294
1.511
1.5348
1.5312
1.5336
1.5293
1.5261
C4–C6
1.528
1.5395
1.5351
1.434
1.529
1.5248
1.532
1.5277
1.5241
C5–X
1.456
1.459
1.4602
1.434
1.4159
1.4225
1.8423
1.8226
1.8157
C6–X
1.459
1.4587
1.4593
1.363
1.4102
1.4164
1.852
1.8291
1.8204
N19–H20
1.02
1.0124
1.0122
RMSD
0.007
0.004
0.044
0.043
0.012
0.017
Bond Angle (Ǻ)
C2–C1–C4
111.167
112.9414
112.6682
109.158
113.6749
113.4912
113.695
113.2515
C3–C5–C–N19
112.168
114.4365
114.1215
114.519
115.6218
115.463
116.2287
115.7837
C4–C6–N19
109.062
117.1339
117.089
111.080
112.5323
112.4612
114.0879
113.5635
C–C–H
109.556
109.7392
109.3667
109.510
109.5672
109.5859
109.5322
109.3938
RMSD
4.286
4.199
2.436
2.323
Dihedral
Angles
C1C4C6N19
–41.612
–39.3082
–39.8087
–73.612
52.1585
–72.2138
–72.3498
–72.2894
C2–C1–C4–H16
–74.232
–153.0755
–152.5683
–177.707
–157.5784
–156.3957
–142.2856
–141.4007
C1C4C6H12
168.626
–162.7305
–163.133
164.936
–163.8118
–163.7655
–46.7798
–45.7234
Strain Energy
The strain energy is
an important parameter in assessing electronic properties and molecular
stability, especially in cyclic systems. Several approaches have been
developed to explain the strain energies of cyclic molecules. Most
theoretical methods often require the computation of the total energies
of the molecule of interest relative to an acyclic strain-free counterpart.
The strain energies of the studied systems have been computed at the
MP2/aug-cc-pVTZ and the M06-2X/6-311++G(d,p) level of theory in line
with refs (21, 32). This approach
involves the computation of the ring strain energy relative to the
strain energy of the six-membered counterparts, which several studies
had reported to be less strained among the cycloalkane family. The
detailed procedure for computations can be found in the Supporting Information. The energies of all acyclic
counterparts were obtained by ground-state geometry optimization at
the same level of theory as the cyclic molecules. The resulting strain
energies are presented in Table . The experimental strain energy for cycloheptane was
reported to be 6.3 kcal/mol. Khoury et al. calculated the strain energy
to be 8.0 kcal/mol using the s-homodesmotic approach.[33] In this study, the calculated strain energy was observed
to be 6.38 kcal/mol from MP2 calculations and 5.69 kcal/mol with the
M06-2X functional. Several reports have pointed out that the strain
energies of cyclic molecules are influenced by heteroatom substitution
or functionalization.[32−35] Thus, our results are comparable to these reports. The influence
of substitution with the halogen atoms is quite minimal when compared
to the heteroatom effect on the CHP ring. Substitution with the F
atom only causes a slight increase in the ring strain of about 0.28
kcal/mol, while substitution with the Cl and Br atoms increases the
strain energy by 1.08 kcal/mol, thus accounting for the increased
kinetic stability of the FCHP derivative as observed by other quantum
chemical descriptors in this work. The replacement of the carbon atom
with N, O, and S atoms was observed to cause an appreciable decrease
in the ring strain of about 1.29, 0.61, and 0.56 kcal/mol, respectively.
This minimal influence could result from the absence of electronic
delocalization and the nonaromatic nature of the ring. However, note
that a more significant influence is expected in the case of the unsaturated
derivatives. The contribution of bond lengths, angles, and bond dissociation
energies to ring strain has been reported to have a substantial effect.[32] The calculated C–N–C, C–O–C,
and C–S–C bond angles were found to be 116.2, 114.46,
and 103.116°, respectively, at the MP2 level, while the XRD bond
angles for these bonds were around 112.16 to 114.52°, thus indicating
a significant deviation from the ideal geometry due to torsional and
angle strain. The calculated C–C–C– bond angles
around the halo-substituted derivatives were within 113.43–113.73°,
which is significantly higher than the ideal 109.5° expected
for an sp3-hybridized carbon atom. To fully appraise the
contribution of bond angle deviation to the observed ring strain energy,
it would be interesting to compare the observed changes in bond angles
around the C–N–C, C–O–C, and C–S–C
bonds and the point of halogen substitution in the studied compounds
with other lower members. Thus, cyclohexane, which is considered strain-free
from several experimental observations, was observed to possess an
angle deviation of about 1.09° in the heterocyclic derivatives
and 2.65° in the halo-substituted six-membered counterparts,
while the five-membered counterparts exhibited an angle deviation
of about 5.2° when substituted with N and O atoms and 15.9°
in the case of the divalent sulfur atom. All of these factors contribute
to the differences in the behavior of the heteroatoms within the ring.
Thus, the reactivity or stability of the studied systems is very much
dependent on the heteroatom and halogen substituent, respectively,
and also specific to the ring size.
Table 3
Calculated Strain
Energies (kcal/mol)
for the Studied Compounds Estimated at the MP2 and the M06-2X Level
of Theory
CHP
azepane
oxepane
thiepane
FCHP
ClCHP
BrCHP
MP2 Level
6.38 kcal/mol
5.09 kcal/mol
5.77 kcal/mol
5.82 kcal/mol
6.55 kcal/mol
7.14 kcal/mol
7.04 kcal/mol
M06-2X Level
5.69 kcal/mol
5.33 kcal/mol
5.12 kcal/mol
6.17 kcal/mol
5.97 kcal/mol
6.77 kcal/mol
6.77 kcal/mol
Vibrational
Analysis
Molecular vibrations
are often considered distinctive physical properties, which are specific
to any given molecule. The molecular vibrational properties of the
studied compounds are presented in this study, and the experimental
Fourier transform infrared (FT-IR) spectra for the studied compounds
were obtained from the NIST database as determined by gas-phase transmittance
spectroscopy. The spectra and normal modes of vibrations for the studied
compounds are presented in Figures S1 and S2 of the Supporting Information. In the interim, 57 modes of vibrations
were observed for cycloheptane and its associated halo-substituted
derivatives, while 51 vibrational modes were obtained for oxepane
and thiepane. Similarly, 54 modes of vibrations were obtained for
azepane. Using the (3N-6) rule, 20 stretching, 19 bending, and 18
torsional modes of vibrations were obtained for CHP and halo-substituted
derivatives, while 18 stretching, 17 bending, and 16 torsional modes
were obtained for oxepane and thiepane and 19 stretching, 18 bending,
and 17 torsional vibrational modes were recorded for azepane. The
vibrational frequencies were calculated at the M06-2X/6-311++G(d,p)
level of theory and compared with the experimentally reported data.
Some selected frequencies and IR intensity along with their assignment
and potential energy distribution (PED) are presented in Tables S1–S7, and the plots are equally
presented in Section S1 of the SI.
CH Vibrations
The infrared spectra
of cycloalkanes are similar to those of alkanes, except in situations
where an alkyl substituent is absent. Moderately strong CH2 scissoring frequencies observed between 1440 and 1470 cm–1 were situated depending on the ring size. The C–H stretch
frequency for alkanes and cycloalkanes show clearly absorption at
2850–3000 cm–1; the calculated CH stretching
absorptions for the studied compounds were observed at 2991, 3031
cm–1 (CHP), 3001, 3027, 3049 cm–1 (FCHP), 3001, 3024, 3049 cm–1 (BrCHP), 3001, 3023,
3067 cm–1 (ClCHP), 2942, 2968, 3068 cm–1 (oxepane), 2992, 3025, 3043 cm–1 (azepane), and
3001, 3005, 3085 cm–1 (thiepane). These values are
in close agreement with the experimentally reported data for these
compounds.[29,30] The absorptions above 3000 cm–1 can be attributed to the effect of the substituent,
especially the difference in the electronegativities of the halogen
atoms. Methyl groups and methylene groups of cycloalkanes normally
have characteristic CH bending deformations at 1400–1470 cm–1. However, the calculated CH bending deformations
were observed at 1544–1403 cm–1 (CHP), 1545–1430
cm–1 (FCHP), 1543–1413 cm–1 (BrCHP), 1544–1409 cm–1 (ClCHP), 1542–1402
cm–1 (oxepane), 1537–1421 cm–1 (azepane,) and 1421–1533 cm–1 (thiepane)
for both symmetric and asymmetric deformations.
C–C Vibrations
The C–C
stretching vibrations have variable frequencies and are usually weak.
This generally occurs between 11,000 and 1000 cm–1. The calculated C–C stretching vibrations for the studied
molecules were observed at 1145 and 1129 cm–1 (CHP),
1137 and 1161 cm–1 (FCHP), 1147 and 1134 cm–1 (BrCHP), 1136 and 1080 cm–1 (ClCHP),
1139 and 1164 cm–1 (oxepane), 1120 and 1045 cm–1 (azepane), and 1125 and 1088 cm–1 (thiepane), while the experimental data were obtained as weak absorptions
between 1000 and 1500 cm–1 for the halo-substituted
derivatives and 1200–1300 cm–1 for the heterocyclic
derivatives.
C–X Vibrations
Where X = (F, Br,
and Cl)
The presence of heavy atoms and decrease in molecular
symmetry results in the absolute mixing of vibrations; thus, the bond
vibrations between the ring and halogen atom give appreciable information.
C–Br bands are generally assigned in the frequency range of
680–450 cm–1, while C–Cl bonds are
assigned in the range of 850–550 cm–1 depending
on the configuration of the molecule. The absorption at 683 and 412
cm–1 is assigned to C–Br stretching vibrations,
while the absorptions at 724, 432, and 477 cm–1 correspond
to the C–Cl bond. The reported C–F vibrations were 1235
and 1232 cm–1 for experimental and DFT calculations,
respectively. However, in this study, the C–F stretching vibrations
were assigned at 1021, 891, and 994 cm–1. In-plane
deformations for CH–Br and CH–Cl bonds were also observed,
with the peaks at 1229 and 1176 and 1202 and 1236 cm–1 corresponding to this vibration. Similarly, out-of-plane vibrations
were observed at 237 and 226 (CCBr), 267 and 279 (CCCl), and 380 cm–1 (FCC).
C–Y Vibrations
Where Y = (N, O, S)
and N–H Vibrations
The N–H band was observed
as a singlet peak at 3529 cm–1, which is near the
experimental value observed at 3400 cm–1. The NH
rocking deformation was observed at 1500 and 1087 cm–1 from theoretical calculations, while the corresponding transmission
spectrum recorded in the gas phase shows this absorption as a broad
band around 1499–1505 cm–1. The band at 1176
cm–1 is assigned to the C–N vibrations in
azepane due to deformations. The characteristic C–O absorption
was calculated at 1147 cm–1 and experimentally observed
at 1134 cm–1. The vibrations of the C–S bond
were assigned at 672–614 cm–1 for the stretching
modes. All vibrational modes of the respective groups conform with
the experimental spectra.
Global
Descriptors
Quantum chemical
descriptors such as hardness (η), electronegativity (χ),
chemical potential (μ), and softness, which provide substantial
insight into the stability and reactivity of chemical systems, were
estimated through Koopmans’ approximation and conceptual density
functional theory (CDFT) including the ground-state ionization potential
(IP), second vertical ionization potential, and electron affinity
value of chemical systems.[36,37]The electronic
properties such as ionization potential (IP), EA, and X as evaluated
by Koopmans’ approximation are presented in Table . Quantities such as these give
insight into the reactivity of the substituted cycloheptane molecules
and other systems.[39] It can be inferred
from Table that the
ionization potential values decrease in the order FCHP > CHP >
ClCHP
> BrCHP > oxepane > azepane > thiepane, with FCHP having
the highest
IP value. The electronegativity was observed to be highest in the
FCHP and lowest in thiepane. This result clearly shows that the electronegativity
value of the substituted group affects the entire system; this trend
is seen in the halo-substituted derivatives as well as the hetero-substituted
derivatives. The hardness is seen to increase for the FCHP and CHP
molecule and decreases for azepane and thiepane. The hardness of a
species, atom, ion, or molecule is a qualitative indication of how
polarizable it is, that is, how much its electron cloud is distorted
in an electric field. Chemical hardness is perceived as the capacity
to resist electron density transfer with surrounding species.[40−42] Thus, CHP and FCHP are termed species with less propensity to exchange
electron density with the immediate electronic environment by their
high global hardness and low global softness values; this also shows
that these species will likely be more reactive toward hard bases
and generally more reactive. Thiepane has the highest softness and
lowest hardness value and as such is the least reactive of the studied
compounds toward soft bases based on Pearson’s hard–soft
acid–base theory. CHP was observed to have the highest cubic
electrophilicity index, while azepane and thiepane were observed to
have the lowest values, indicating that they are the best nucleophiles
while ClCHP is the strongest electrophile of all of the studied compounds.
Table 4
Highest Occupied Molecular Orbital–Lowest
Unoccupied Molecular Orbital (HOMO–LUMO) Energy Variation and
Quantum Chemical Descriptors
chemical structure
CHP
FCHP
BrCHP
ClCHP
oxepane
azepane
thiepane
EHOMO (eV)
–9.713
–10.093
–8.862
–9.441
–8.684
–7.462
–7.319
ELUMO (eV)
–0.0098
–0.093
–0.188
–0.147
–0.045
–0.056
–0.086
energy gap (eV) (M06-2X)
9.71
10.0
8.67
9.29
8.64
7.41
7.23
energy gap (MP2)
12.600
12.938
12.086
12.082
11.839
10.420
9.708
ionization potential
9.713
10.093
8.862
9.441
8.684
7.462
7.319
electron affinity
0.0098
0.093
0.188
0.147
0.045
0.056
0.086
electronegativity
4.8613
5.093
4.5251
4.7938
4.3644
3.7591
3.7025
hardness
4.8515
5.0002
4.3374
4.6469
4.3194
3.7033
3.6166
softness
0.103
0.099
0.115
0.108
0.116
0.135
0.138
electrophilicity
2.435
2.594
2.361
2.473
2.205
1.908
1.895
chemical
potential
–0.0098
–0.093
–0.188
–0.147
–0.045
–0.056
–0.086
Quantum chemical descriptors such
as EHOMO, ELUMO, and ΔE (HOMO–LUMO) energy gap offer
reasonable information concerning
the reactivity and stability of molecules. The calculated quantum
chemical parameters for the studied compounds are presented in Table . The ability of a
molecule to donate or accept electrons is related to the HOMO and
LUMO energy values. The higher the HOMO values, the greater the ability
of a molecule to donate electrons, while lower values of LUMO energy
correspond to a strong accepting ability.[40,43] The result for the energy gap shows a decreasing trend in the halo-substituted
molecules in the order FCHP > ClCHP > BrCHP >, indicating
that BrCHP
is the softest of the halo-substituted CHP since it has been asserted
that a molecule with small or no HOMO–LUMO gap is chemically
reactive. This result is in line with the global hardness observation,
which follows a similar trend. However, note that the difference in
the energy gap observed is not highly significant. Therefore, the
reactivity of the halo-substituted derivatives is comparable; however,
this also shows that the energy gap is not the principal factor interplaying
in the molecular reactivity, especially the halo-substituted derivatives.
Some contributions from the electronegativity concept tend to dominate
in some regards, and hence the increase in the band gap upon substitution
with the fluorine atom was observed to be less reactive than other
counterparts. The results indicate that the FCHP derivative is the
most kinetically stable derivative with the highest band gaps of 8.16,
10.0, 11.7, and 12.9 eV, corresponding to B3LYP, M06-2X, ωB97XD,
and MP2 calculations, respectively. All of the different functionals
used to affirm this derivative to be more kinetically stable, which
is in line with the chemistry of the substituted atom from the electronegativity
concept since there is no pi-backdonation due to electron delocalization;
therefore, the polarization in the C–F bond and electronic
exchange is less in these derivatives. The BrCHP derivative was equally
confirmed to be the least kinetically stable derivative, which means
it is more reactive than other halo-substituted counterparts from
band gap considerations. A similar trend was observed in the case
of the heterocyclic derivatives, which indicates that oxepane is a
more kinetically stable species with high band gaps of 11.8 and 10.2
eV obtained from MP2 calculations and ωB97XD functional, respectively.
Low kinetic stability is associated with minimal band gap values due
to the ease in energy for electrons to occupy a high-positioned HOMO
or for electrons to be abstracted from a low-lying LUMO at the transition
state of reactions.[38] In line with these,
the kinetic stability of the halo-substituted compounds also follows
the above trend, with the FCHP compound being the most kinetically
stable derivative. The trend for the nonaromatic heterocycles also
shows a decreasing reactivity and stability in the order oxepane >
azepane > thiepane with the energy values of azepane and thiepane
being closely similar, thus indicating their close kinetic stability.
However, the energy gap computed with the MP2/au-ccPVTZ level of theory
clearly indicates that thiepane is more kinetically stable with a
difference of −0.7 eV. The result prompts that the reactivity
and stability decrease in the order FCHP > CHP > ClCHP >
BrCHP > oxepane
> azepane > thiepane. As observed from the result, CHP and FCHP
molecules
possess the highest HOMO values as well as an energy gap, thus inferring
that substitution with heteroatoms increases the reactivity of CHP,
while substitution with highly electronegative fluorine decreases
the kinetic stability of the ring.
Fukui
Function (Reactivity Descriptor)
The conceptual density functional
theory (CDFT), originally developed
by Robert Parr, is a theoretical framework aiming for unraveling the
reactivity of chemical systems. CDFT encompasses several notions and
quantities, some of which can be utilized to predict favorable reactive
sites and reactive character, and some can effectively compare the
reactivity of several chemical species.[44,45] The Fukui
function is a prominent concept in conceptual density functional theory;
it has been extensively utilized in the prediction of reactive sites.
The Fukui function is a real space function, which is commonly studied
by utilizing the visualization of isosurfaces to facilitate quantitative
comparison between different sites and atomic charge distribution.In this study, single-point energy calculations were obtained for
the molecular geometry optimized at the M06-2X/6-311++G(d,p) level
of theory, and the Hirshfeld charges, condensed Fukui functions, and
condensed dual descriptors (CDDs) were evaluated at the same level
of theory. Table S9 in the SI shows some
selected values of f+, f–, and f0 and Δf (condensed dual descriptor, CDD) obtained for CHP, FCHP,
BrCHP, ClCHP, oxepane, azepane, and thiepane molecules. Analysis of
the f+ values of the abovementioned compounds
reveals that the most susceptible sites for nucleophilic reactions
are mostly the electronegative atoms, and possibly these sites might
likely be less prone to electrophilic attacks considering the negligible
difference in f+ values. Similarly, the
dual descriptor suggests the same sites as positive sites and thus
unfavorable for an electrophilic attack. Electrophilicity and nucleophilicity
are the intrinsic properties of molecules purported by the deficiency
or abundance of electrons on specific atoms. This result correlates
with the calculated CHELPG charges on these reactive sites; carbon
atoms with positive charges as observed are unsuitable sites for electrophilic
reactions, while negatively charged atoms are suitable sites of attack,
which seems to correlate with the conventional knowledge of nucleophilic
and electrophilic substitution reactions.
Population
and Atomic Charge Analysis
The significance of atomic charges
in understanding the fundamental
properties of molecules such as the direction for a reaction, atomic
states in molecular systems, and sites of reaction cannot be overemphasized.
The atomic charge is quite often the easiest way to predict the distribution
of charge densities in molecules. Atomic charges find significant
application in calculating electrostatic interactions by molecular
force fields and computing condensed Fukui functions. The CHELPG (charges
from electrostatic potentials using a Grid-based method) atomic charge
scheme proposed by Breneman and Wiberg,[46] in which the molecular electrostatic potential at a given point
around a molecule is reproduced, was employed in this study together
with the Atomic Dipole Corrected Hirshfeld Charge (ADCH) method proposed
by Tian Lu,[47] which is a sum of Hirshfeld
charges and correction charge, was used to compute and reveal the
most reactive sites in the compound and its overall reactivity. The
CHELPG and ADCH charges of the studied compounds were evaluated using
the Multiwfn program.[24] The results are
presented in Tables S13–S20 of the
SI and Figure in
the manuscript. It can be inferred from the results that the CHELPG
charges on C1 bearing the halogen atom in FCH deviate from the value
observed in the CHP molecule; this is due to the high electronegativity
of the fluorine atom at this position. This charge on C1 is also seen
to be positive when compared to other carbon atoms in the molecule,
which is a clear indication of the weak electrostatic potential around
the carbon atom due to the dipole moment of the bond. This effect
was also observed in the ADCH charge of C1, which clearly shows a
significant contribution to the dipole moment of the fluorine atom.
The substitution of a fluorine atom at C1 was found to also influence
the charges on the adjacent carbon and hydrogen atoms, causing the
charges in this position to be positive when compared to others in
the same molecule and the molecule without substitution. This interplay
of the fluorine atom might result in the observed increase in the
band gap of the FCHP derivative, thus causing a decrease in the reactivity
of the overall FCHP derivative. For BCHP, both CHELPG and ADCH charges
on the carbon atom bearing the halogen atom were slightly negative,
which shows that the electrostatic potential around this atom is quite
significant, and despite the dipole moment in the bond, the charge
value, however, decreased in this position relative to other positions
in the molecule and the halogen substituent was also seen to affect
the charges on adjacent carbon atoms. The decrease in charge values
was observed to be highly prominent in ClCHP at the carbon bearing
the chlorine atom and the charge was positive for this position, indicating
a weak electrostatic potential at this position. The CHELPG and ADCH
charges on the hydrogen directly attached to the heteroatom in azepane
were positive, while those on an adjacent atom were negative and closely
similar and higher than the charge on other carbon atoms due to the
effect of the heteroatom in the ring. The ADCH charges on C4 and C2
adjacent to the oxygen atom in oxepane were significantly less compared
to other carbon atoms in the molecule due to the dipole moment in
these bonds, which points toward the oxygen atom. The CHELP charge
was higher in these positions compared to other positions; this affirms
that there is a significant contribution from these carbon atoms to
the atomic dipole moment of oxygen in the molecule. For thiepane molecule,
the C5 and C6 atoms adjacent to the sulfur atom exhibited a similar
ADCH charge, which was lower than that for other carbon atoms, while
the CHELPG charge for C6 was quite higher than that for every other
carbon atom in the molecule, which is a clear reflection of the high
electrostatic potential at this position. The CHELPG charge of all
carbon atoms in the CHP molecule was similar due to the symmetry and
uniformity of the electrostatic potential around the molecule. The
result obtained shows a perfect correlation between ADCH and CHELPG
charges in predicting the electrostatic potential distribution and
dipole moment contribution of atoms in the studied molecules. It also
affirms the differences in the electron density distribution orchestrated
by substitution.
Figure 2
Comparison of ADCH and CHELPG Population Analysis for
the studied
compounds at the M06-2X/6-311++G(d,p) level of theory. (a) Halo-substituent
derivatives and (b) heterocyclic derivates.
Comparison of ADCH and CHELPG Population Analysis for
the studied
compounds at the M06-2X/6-311++G(d,p) level of theory. (a) Halo-substituent
derivatives and (b) heterocyclic derivates.
Density of States (DOS)
Density of
states (DOS) is an essential phenomenon in solid physics. The exact
number of states corresponding to a unit energy interval is designated
by DOS. However, the energy levels of isolated systems are discrete,
and thus the notion of DOS often becomes questionable. However, the
augmentation of distinct quantum levels to curves generates an indispensable
tool (DOS graph) for depicting and visualizing the contribution of
molecular orbitals to various quantum states.[48] The distribution of molecular orbital levels of molecules can be
brilliantly exhibited by the density of states (DOS), and the curves
in the plot replicate the number of molecular orbitals at different
quantum states in unit energy intervals. The total DOS (TDOS) map,
partial DOS (PDOS) map, and overlap partial DOS (OPDOS) map of CHP,
oxepane, azepane, thiepane, FCHP, BrCHP, and ClCHP with contributions
from different sets of molecular orbitals were plotted by invoking
Multiwfn, as explicated in Figure . The left-side axis corresponds to TDOS and PDOS,
while the right side corresponds to OPDOS. The orbital properties
are vividly revealed in different energy ranges in the graph. It is
noticeable from the graphs of azepane, oxepane, and thiepane that
the heteroatom defined as fragment 1 contributed minimally to the
molecular orbitals (MOs) in the range of −13.6 to −5.4
eV (highest energy) and −10.9 to −5.4 eV (lowest energy)
and therefore suggest the availability of minimal occupation states
based on condensed matter physics theory,[49] while FCHP, BrCHP, and ClCHP also contributed negligibly in the
range of −10.9 to −5.4 eV (lowest energy) and −13.6
to −8.2 eV (highest energy) with minimal occupancy quantum
states. The major valence molecular orbitals are seen to be contributed
by p-orbitals of carbon (fragment 2) and hydrogen (fragment 3), with
a similar percentage contribution to the molecular orbitals (MOs).
The positive values in the green curve, which is the OPDOS, indicate
that the MOs in the corresponding energy range exhibit the bonding
character between the defined fragments; likewise, the negative values
suggest antibonding orbital behavior. However, it is observed that
the OPDOS of all of the studied molecules overlaps in the negative
range of the graph, thus indicating the presence of antibonding MOs
in the molecules by virtue of the antagonistic orbital overlap, as
explicated in Figure . Simulating the DOS for small-molecule systems aids in understanding
the electronic distribution in specific energy levels and associated
changes in properties and energy quantization within the systems.
Figure 3
TDOS (black),
PDOS, and OPDOS density of states map of the studied
compounds. The dashed line indicates the position of the HOMO. The
left axis is for total and partial density of states, the right axis
is for overlap density of states. The isovalue of MO isosurfaces is
0.05. The insets correspond to the HOMO and LUMO plots for the studied
system, respectively. a, b, c, d, e, f, and g correspond to azepane,
oxepane, thiepane, FCHP, BrCHP, ClCHP, and CHP molecules.
TDOS (black),
PDOS, and OPDOS density of states map of the studied
compounds. The dashed line indicates the position of the HOMO. The
left axis is for total and partial density of states, the right axis
is for overlap density of states. The isovalue of MO isosurfaces is
0.05. The insets correspond to the HOMO and LUMO plots for the studied
system, respectively. a, b, c, d, e, f, and g correspond to azepane,
oxepane, thiepane, FCHP, BrCHP, ClCHP, and CHP molecules.
Bond Order
Laplacian
Bond Order (LBO)
Bond
order is a quantitative description of chemical bonds and has been
widely used by chemists to understand the nature of molecular electronic
structure and predict molecular reactivity, aromaticity, and stability.
It is an important concept in understanding the nature of the chemical
bond. The Laplacian bond order (LBO) is defined as a scaled integral
of negative parts of Laplacian of electron density in a fuzzy overlap
space. The Laplacian bond order is obtained by integrating a negative
part of Laplacian of electron density in the bonding region, and it
has been demonstrated to strongly characterize actual bonding strength.
It has also been reported in the literature to have a direct correlation
with bond polarity, bond dissociation energy, and bond vibrational
frequency[50] and is therefore utilized in
this work. The calculated values for the LBO of oxepane, azepane,
thiepane, FCHP, BrCHP, ClCHP, and CHP are presented in Table S11 of the SI.The LBO of the C–C
bond in the CHP was observed to be alternating, i.e., not uniformly
distributed in the entire molecule. The LBO predicts the covalency
in the carbon–halogen bond in the substituted CHP derivative
to be in the order C–Cl (0.298) > C–Br (0.179) >
C–F
(0.049), thus showing the ionic nature of the C–Cl bond. The
decrease in the value of the LBO for the C–F bond can be attributed
to the strong repulsive interactions between the carbon atom and lone
pairs of electrons on the fluorine atom or the highly polar nature
of the bond. However, it can be observed from the result that the
fluorine substituent has a significant effect on the bond order of
adjacent carbon atoms, with the LBO of C1–C2, C1–C4
bonds adjacent to the fluorine atom exhibiting a higher order than
other carbon atoms. This is likely due to the strong electron-withdrawing
effect of the fluorine atom and the interaction between the C1 and
the lone pairs on fluorine, which pushes the electron density toward
C1–C4 and C1–C2 bonds. This same effect was also observed
in the C1–C2 bond of oxepane, which has a higher order than
other carbon atoms in the molecule. Nevertheless, the C2–O19
and C4–O19 bond order was lower compared to others. Comparing
the LBO of the C-heteroatoms in oxepane, azepane, and thiepane, we
observed the bond order to be C–N19 (0.711) > C-S19 (0.633)
> C–O19 (0.299). This trend can be attributed to the increase
in the atomic size between the two bonding atoms, which causes the
region of space in which electrons are shared to become proportionately
smaller as one of the bonding atoms becomes larger. Generally, this
analysis is conducted to compare the similarities or differences in
the bond order trend in substituting the CHP ring with any of the
substituted groups, and the insight from these results is that the
bond order does not decrease or increase linearly with the type of
group substituted, but the covalency in or the ionic nature of bonds
could play a more significant role.
Bond
Polarity Index (BPI)
The result
of the bond polarity index (BPI) of the studied compounds obtained
by eq is presented
in Table . The bond
polarity index between two atoms (A and B) is the ionic character
between the two bonding species when excluding the pure covalent and
homonuclear compositions.[51,52]where EIA and EIB are
the energy indices of the two interacting species, EIAref and EIBref are the energy indices
derived from computing the homonuclear reference molecules (ethane,
urea, fluoromethane), x = N, S, O, Br, Cl, F, and y = carbon.
Table 5
Bond Polarity Index of the Studied
Compounds
compound
interacting atoms (x and y)
EI of atom x
EI of atom y
EI of reference atom x
EI of reference atom y
BPIxy
azepane
N19
–0.499667
N19–C5
–0.511440
–0.659349
–0.718132
–0.0705
N19–C6
–0.520813
–0.0710
oxepane
O19
–0.557084
–0.659349
–0.905877
O19–C2
–0.535949
–0.2254
O19–C4
–0.542034
–0.2315
thiepane
S19
–0.399802
S19–C5
–0.493716
–0.659349
–0.617040
–0.0516
S19–C6
–0.500086
–0.0579
BrCHP
Br21
–1.721563
Br21–C1
–0.468814
–0.659349
–2.171155
–0.2590
Br21–C2
–0.539780
–0.3300
Br21–C4
–0.543390
–0.3336
ClCHP
Cl21
–0.462302
Cl21–C1
–0.487663
–0.659349
–0.697793
–0.0638
Cl21–C2
–0.533395
–0.1095
Cl21–C4
–0.535960
–0.1121
FCHP
F21
–0.631278
F21–C1
–0.476416
–0.659349
–0.992515
–0.18
F21–C2
–0.517025
–0.2189
F21–C4
–0.514987
–0.2168
The EI value in C–X interactions was
derived from the calculation
of substituted cycloheptane species, and EIref is the reference
value, which is obtained by manipulating the homonuclear atoms. A
greater proportion of the BPI between A and B signifies the presence
of higher polarity.[52]The result
shows that the polarity of the C–X bonds in the
halogen-substituted compounds decreases in the order −0.26
(C–Br) > −0.18 (C–F) > −0.064 (C–Cl).
In contrast to the C–F and C–Cl bonds, the value for
the C–Br bond indicates that the bond is only slightly polarized
with the polarization in the direction of the carbon atom. The charge
distribution of the bond is expected to be in the direction of the
halogen atom, which is more electronegative. However, a partial negative
charge of −0.039 was observed in the carbon atom bearing the
halogen atom. This shows that the average number of bonding electrons
is minimally distributed, which accounts for the slight negative charge
as opposed to the expected positive charge. This result also shows
that there is no direct correlation between the bond polarities and
the partial charges on bonding atoms and also that the position or
distribution of bonded electrons contributes positively to the bond
polarity. The bond polarity index of C–O, C–N, and C–S
bonds in oxepane, azepane, and thiepane decreases in the order −0.2315
> −0.0579 > −0.0710 with the last value corresponding
to the C–N bond
Intrinsic Bond Strength
Index (IBSI)
The intrinsic bond strength index (IBSI) has
been proposed to quantify
the strength of chemical bonds based on the independent gradient model
(IGM) framework. The IGM based on the Hirshfeld partition of molecular
electron density (IGMH) is employed in this study. The IGMH-IBSI scheme
offers substantial information via the local electron density contragradient
distribution between two bonded pairs with the contribution of electron
density from the two species.[53−56] It can also be used to compare the strength of weak
interactions between two atoms or groups. This molecular descriptor
has been proven to correlate with the strength of covalent bonds and
interactions. Thus, this descriptor is highly essential in understanding
and appraising the strength of interactions between substituents and
the ring atoms and hence utilized in this study.The intrinsic
bond strength index (IBSI) calculated using the IGM based on the Hirshfeld
partition of molecular electron density (IGMH) using Multiwfn is presented
in Table S10. It can be inferred from the
plot of the halogen-substituted cycloheptane that the IBSI of the
carbon–halogen bond is 0.6216 (C–F) > 0.22527 (C–Cl)
> 0.17554 (C–Br). This shows that the IBSI for the carbon–halogen
bond decreases as we go down the group. The decrease in the IBSI of
the C–Br bond can be attributed to the long bond length of
the C–Br bond since it has been reported in the literature
that bond strength decreases with increasing bond length.[54,56] The IBSI of the carbon–heteroatom bond in oxepane, azepane,
and thiepane shows that the IBSI decreases as the size of the heteroatom
increases, and the order is C–N (0.4828) > C–O (0.41080)
> C–S (0.25922). This trend seems to be in line with that
reported
by Klein et al.,[56] who observed that the
IBSI increases from the left to right across the second period of
the element in the periodic table. Comparing this result with the
intrinsic bond strength scale, it can be confirmed that the IBSI is
in the covalent range, thus affirming the presence of significant
interactions in the selected bonds.To further study the intramolecular
interaction and quantify the
interaction arising from the partitioning of electron densities between
atoms in the studied compounds, the IGMH-dginter and IGMH-dgintra isosurface and dg-signature of the studied molecules
were plotted and visualized with the VMD program. The result is presented
as inset in the noncovalent interaction plot in Figure . It clearly shows that the electron density
of the C–Cl bond is slightly higher than that of C–F
and C–Br for halogen-substituted cycloheptane, thus confirming
a strong covalent interaction between the halogens and the ring as
indicated by the color code in the RDG plot. However, the sign of
the second eigenvalue of the electron density (ED) Hessian matrix,
which clearly distinguishes repulsive (λ2 > 0)
interaction
from attractive (λ2 < 0) interactions shows that
the sign(λ2)ρ for the molecules is >0, indicating
the presence of slight repulsive interactions and strong covalent
interactions[54−59] in the molecules as indicated by the intrinsic bond strength index
scale. In the case of oxepane, azepane, and thiepane, the result shows
that the C–N bond has a higher ED than C–O and C–S
bonds, suggesting stronger covalent interactions. This strong interaction
also results in a significant decrease in strain energy for these
derivatives, subsequently causing a stabilizing effect. The value
(dg-pair) of the compounds is in the order C–N (0.47) >
C–S(0.44)
> C–O(0.41) and the NCI plot shows a strong attractive interaction
between the heteroatoms and carbon atoms with a strong possibility
of hydrogen bond formation in azepane.
Figure 4
Noncovalent interaction
plots depicting the intermolecular interactions
between the heteroatoms and halogens with the ring. (a) FCHP, (b)
BrCHP, (c) ClCHP, (d) oxepane, (e) azepane, and (f) thiepane. The
insets show the dg-pair inter- and intramolecular interaction signature
of the studied compounds.
Noncovalent interaction
plots depicting the intermolecular interactions
between the heteroatoms and halogens with the ring. (a) FCHP, (b)
BrCHP, (c) ClCHP, (d) oxepane, (e) azepane, and (f) thiepane. The
insets show the dg-pair inter- and intramolecular interaction signature
of the studied compounds.
Natural Orbital Analysis (NBO)
The
natural bond orbital analysis of compounds is one useful tool for
probing the inter- and intramolecular interactions resulting from
chemical bonds in molecules. It likewise functions as a resourceful
tool for investigating charge transfer and conjugative interactions
existing in molecules.[60,61] The NBO analysis also provides
information vis-à-vis both filled and vacant orbitals, thus
aiding the exploration of intra- and intermolecular interactions.
The NBO simulation based on Weinhold’s approach reveals that
when molecular orbitals are appropriately oriented, hyperconjugation
can confer a stabilizing effect, which results from the delocalization
of electron density from bonding or lone pair (filled Lewis type)
to adjacent vacant or deficient orbitals (non-Lewis NBOs like antibonding
or Rydberg). The stabilization energy for each donor (i) and acceptor
(j) NBO can be defined in terms of the second-order perturbation energy
(stabilization energy E(2)); generally, the higher the stabilization
energy E(2), the greater the interaction existing between the donor
(filled) and acceptor (vacant) orbitals[39,51]The
NBO analysis was simulated at the M06-2X/6-311++G(d,p) level of theory
using the NBO program to study the charge transfer, intramolecular
rehybridization, and delocalization of electron density within the
molecules, as presented in Table . The prominent intramolecular hyperconjugative interactions
resulted in the highest stabilization of 4.10, 3.36, and 3.12 kcal/mol
energy corresponding to σ(C3–CH16) → σ*(C1–C2),
σ(C2–H9) → σ*(C1–H8), and σ(C3–H16)
→ σ*(C3–H10), respectively, for CHP, while those
for FCHP were 3.95 kcal/mol corresponding to LP(2)F21 → σ*(C1–C4),
3.95 kcal/mol for σ(C2–H14) → σ*(C3–C5),
3.64 kcal/mol for σ(C4–H16) → σ*(C6–C7),
and 3.41 kcal/mol for σ(C2–H9) → σ*(C1–H8).
The highest stabilization energy of BrCHP as observed from the NBO
analysis was 4.34 kcal/mol for the donor–acceptor interaction
from σ(C3–H14) → σ*(C1–C2), 4.0 kcal/mol
for σ(C2–H14) → σ*(C5–N), and 4.00
kcal/mol for σ(C6–H13) → σ*(C1–C4),
while the highest E2 values for ClCHP were 4.03, 3.53, and 2.56 kcal/mol,
which correspond to the interaction between σ(C2–H14)
→ σ*(C3–C5), σ(C2–H14) → σ*(C1–C4),
and LP(2) Cl21 → σ*(C1–H8). For oxepane molecules,
the highest stabilization energies (E2) resulting from donor–acceptor
interactions were observed to be 6.98, 6.13, 5.78, and 4.50 kcal/mol
arising from the interaction of LP(2) O19 → σ*(C4–C6),
LP(2) O19 → σ*(C2–H8), σ(C1–H12)
→ σ*(C2–O19), and σ(C6–H17) →
σ*(C4–O19), respectively; for azepane, it was observed
from LP(1) N19 → σ*(C3–C5) with an E2 of 7.11
kcal/mol, σ(C1–H8) → σ*(C5–N19) with
an E2 of 4.13 kcal/mol, and σ(C4–H16) → σ*(C6–N19),
LP(1) N19 → σ*(C4–C6), and LP(1) N19 →
σ*(C6–H12) with stabilization energies of 4.82, 8.91,
and 4.08 kcal/mol, respectively. The thiepane molecule has its most
significant interaction resulting in the stability of the system from
LP(2) S19 → σ*(C3–C5), LP(2) S19 → σ*(C6–H12),
and σ(C1–H3) → σ*(C2–C3) with stabilization
energies of 5.67, 4.75, and 4.01 kcal/mol, respectively. This result
suggests that the stability of the halogen-substituted cycloheptane
is in the order BrCHP > ClCHP > FCHP based on the stabilization
energy
values since it has been asserted that the higher the stabilization
energy, the greater the interaction and the higher the overall stability
of the system. The increased stabilization interaction as observed
for the FCHP derivative could result from a pi-backdonation from the
fluorine lone pair, thus accounting for the increased kinetic stability
as explicated by the band gap and other quantum chemical descriptors.
However, in the case of the heterocycles, the oxepane molecule was
seen to afford the highest perturbation energy resulting from the
nonbonding interaction between the oxygen lone pair and the ring,
thus accounting for the increased molecular stability as pointed by
other stability descriptors. Thiepane exhibited the least E2 energy
among the studied heterocyclic derivatives. These stabilization interactions
between the lone pair orbitals and the antibonding orbitals increase
the stability of these compounds. The detailed NBO data can be found
in Table S12 of the SI.
Table 6
Second-Order Perturbation Theory Analysis
of the Most Interacting NBOs of the Studied Compounds at the M06-2X/6-311++G(d,p)
Level of Theory
donor (i)
occupancy
acceptor (j)
occupancy
E(2)a [kcal/mol]
E(j)–E(i)b [au]
F(i, j)c [au]
hybrid
AO (%)
CHP
σC3–H16
1.97829
σ*C1–C2
0.01685
4.10
0.88
0.054
sp33.51
s(22.16%)p(77.80%)d(0.04%)
σC7–H21
1.98058
σ*C5–H11
0.01699
3.09
0.89
0.047
sp2.59
s(27.84%)p(71.97%)d(0.20%)
FCH
LP3(F21)
1.97535
σ*C1–C4
0.02694
3.95
0.78
0.049
sp99.99
s(0.10%)p(99.85%)d(0.05%)
σC3–H10
1.97814
σC5–H11
0.01667
3.31
0.89
0.048
sp3.53
s(22.11%)p(77.84%)d(0.04%)
σC2–H14
1.97572
σ*C1–C4
0.02694
3.35
0.88
0.049
sp3.42
s(22.61%)p(77.34%)d(0.05%)
BrCHP
σC3–H15
1.97560
σ*C1–C2
0.02326
4.34
0.87
0.055
sp3.52
s(22.11%)p(77.85%)d(0.04%)
σC4–C6
1.97371
σ*C1–Br21
0.04348
3.28
0.64
0.041
sp2.62
s(27.58%)p(72.23%)d(0.19%)
σC6–H13
1.97756
σ*C1–C4
0.02395
4.00
0.86
0.053
sp3.53
s(22.06%)p(77.90%)d(0.05%)
ClCHP
σC2–H14
1.97672
σ*C3–C5
0.01659
4.03
0.88
0.053
sp3.42
s(22.59%)p(77.36%)d(0.05%)
σC2–H9
1.97755
σ*C1–H8
0.02578
3.61
0.88
.050
sp3.47
s(22.38%)p(77.57%)d(0.05%)
Oxepane
σC6–H17
1.97481
σ*C4–O19
0.02542
4.50
0.79
0.053
sp3.48
s(22.32%)p(77.64%)d(0.04%)
σC4–H15
1.98146
σ*C2–O19
0.02544
3.12
0.81
0.045
sp3.14
s(24.12%)p(75.82%)d(0.06%)
Azepane
σC4–H16
1.97645
σC6–N19
0.01912
4.82
0.85
0.057
sp3.47
s(22.38%)p(77.57%)d(0.04%)
LP(1)N19
1.91097
σC3–C5
0.02909
7.11
0.66
0.062
sp7.15
s(12.26%)p(87.63%)d(0.10%)
Thiepane
σC1–H13
1.97863
*σC2–C3
0.01734
4.01
0.88
0.053
sp3.53
s(22.04%)p(77.91%)d(0.05%)
LP(2)S19
1.94015
σ*C3–C5
0.02631
4.75
0.61
0.049
sp99.99
s(0.47%)p(99.50%)d(0.02%)
E2 represents the energy of hyperconjugative
interactions (stabilization energy).
Energy difference between the donor
and acceptor E(i) and E(j) NBO orbitals.
F(i, j) is the Fock matrix element between I and j NBO, and LP (n)a is a valence lone pair
orbital (n) on atom (A).
E2 represents the energy of hyperconjugative
interactions (stabilization energy).Energy difference between the donor
and acceptor E(i) and E(j) NBO orbitals.F(i, j) is the Fock matrix element between I and j NBO, and LP (n)a is a valence lone pair
orbital (n) on atom (A).
Electrostatic Potential
Distribution (ESP)
The molecular electrostatic potential
is an essential tool in molecular
modeling for the visualization of electron density distribution, understanding
biointeraction and hydrogen bonding interaction, and visualization
of reactive sites, and the charge distribution determines how molecules
interact with one another. High regions of electrostatic potential
are indications of the relative absence of electrons and likewise
low regions of electrostatic potential are indicative of high electron
density.[62−64] Electrostatic potential ESP offers a visible molecular
display of polarity and aids in the understanding of electronic structures
of compounds modified by substitution (e.g., heteroatoms and halogen
substituents); it shows the most vulnerable sites for nucleophilic
and electrophilic substitution, charge delocalization, and intermolecular
hydrogen bonding. The molecular electrostatic potential of CHP and
its substituted derivatives in comparison to their corresponding cyclohexane
counterparts is presented in Figure mapped over 0.02 isosurfaces of electron density.
The ESP isosurface is populated with a positive charge density (green)
around the hydrogen atoms of the respective molecules, while a negative
charge density is observed around the heteroatoms and halogen substituents.
The ESP minimum isosurface values on the isosurface of the halogen-substituted
derivatives range between −17.31 and −18.60 kcal/mol,
while the minimum values on the heteroatom derivatives range between
−24.50 and −33.49 kcal/mol. It is clear from the isosurface
in Figure S10 that both the heteroatom
and halo groups might be susceptible to electrophilic substitution,
while the hydrogens are mostly susceptible to nucleophilic attacks.
The entire CHP molecule is populated with a positive charge density
over the hydrogen atoms, indicating sensitivity toward nucleophilic
attack. These results clearly distinguish the reactive sites of electrophilic
and nucleophilic attack, with the negative ESP corresponding to suitable
sites for the electrophilic attack and positive sites for the nucleophilic
attack, respectively. However, it will be interesting to examine the
electron density distribution among other lower members, especially
cyclohexane derivatives; thus, the ESP isosurfaces of the studied
compound are plotted with reference to their six-membered counterparts
as presented in Figure . A similar charge density distribution was observed; however, other
molecular properties are significantly different with much dependence
on ring size. Thus, there are specific electronic behaviors distinctive
to the seven-membered derivatives from other lower members.
Figure 5
Electrostatic
potential distribution of the studied compounds with
comparison to cyclohexane counterparts. (a, c, e, g, i, k) ESP isosurface
plots of oxepane, azepane, thiepane, FCHP, BrCHP, ClCHP, and CHP;
(b, d, f, h, j, l) ESP isosurface plots of cyclohexane and substituted
derivatives.
Electrostatic
potential distribution of the studied compounds with
comparison to cyclohexane counterparts. (a, c, e, g, i, k) ESP isosurface
plots of oxepane, azepane, thiepane, FCHP, BrCHP, ClCHP, and CHP;
(b, d, f, h, j, l) ESP isosurface plots of cyclohexane and substituted
derivatives.
Conclusions
The theoretical reactivity, stability, and structural investigation
of azepane, oxepane, thiepane, FCHP, BrCHP, ClCHP, and CHP molecules
have been explored and reported in detail using appropriate quantum
chemical techniques with a brief comparison to the available experimental
data reported for the studied systems. Quantum chemical calculations
have been utilized in this work to explore global reactivity descriptors,
Fukui function, density of states (DOS), intrinsic bond strength index
(IBSI), atomic charges, and the second-order perturbation energy analysis
using the natural bond orbital (NBO) program as well as noncovalent
interactions. Molecular stability and substitution effect have also
been estimated via the ring strain energy calculations at the MP2/aug-cc-pVTZ
level of theory. The result for the reactivity of the halogen-substituted
molecules as revealed by the energy gap shows a decreasing trend in
the halogen-substituted molecules in the order FCHP > ClCHP >
BrCHP.
Conversely, the trend for the heterocyclic molecules also shows a
decreasing reactivity and stability in the order oxepane > thiepane
> azepane, with the energy values of azepane and thiepane being
closely
similar, indicating their close kinetic stability as well. Specific
reactive sites for possible electrophilic and nucleophilic substitution
have been identified by the dual descriptor. The electronic distribution
within the cycloheptane and cyclohexane as well as lower-member counterparts
as revealed by ESP is quite similar; however, the heteroatom behavior
within each ring in the cycloheptane counterparts is quite distinct
from cyclohexane and cyclobutane counterparts. The contribution of
atomic orbitals to molecular orbitals has been revealed by the density
of states (DOS) analysis. The NBO results suggest that the stability
of the halogen-substituted cycloheptane is in the order BrCHP >
ClCHP
> FCHP based on the stabilization energy value, while in the case
of the heterocyclic systems, the oxepane molecule is seen to exhibit
the highest perturbation energy resulting from nonbonding interactions
between the nitrogen lone pair and the ring; thus, it is the most
stable derivative of the studied cycloheptane compounds. The results
for the molecular stability and reactivity for the studied compounds
correlate perfectly as all of the different descriptors indicate that
similar derivatives either possess the highest stability or reactivity.
The distribution of the electrostatic potential and electron density
depends on the type of substituent atom attached to the ring, electronegativity
difference, and also the charge distribution on the atoms. Significant
noncovalent intramolecular interactions are observed between the heteroatoms
and the rings and they contribute significantly to molecular stabilization.
The type of substituent attached to the ring is seen to influence
the charge distribution on adjacent atoms. The intrinsic bond strength
index of the C–halogen bond decreases as the bond length increases,
and it is observed to be decreasing down the group for the halogen-substituted
compounds, while it decreases as the size of the heteroatom increases
in the case of the heterocyclic derivatives. Most of these observations
are quite distinct from the seven-membered derivatives, and substantial
differences exist in other lower-member counterparts.
Authors: Leonard M Khalilov; Ekaterina S Mescheryakova; Kamil Sh Bikmukhametov; Natalia N Makhmudiyarova; Kamil R Shangaraev; Arthur R Tulyabaev Journal: Acta Crystallogr C Struct Chem Date: 2020-02-18 Impact factor: 1.172
Authors: Hitler Louis; Izubundu B Onyebuenyi; Joseph O Odey; Azuaga T Igbalagh; MaryJane T Mbonu; Ededet A Eno; Anthony M S Pembere; Offiong E Offiong Journal: RSC Adv Date: 2021-09-09 Impact factor: 4.036
Authors: Giuseppe Resnati; Andrea Daolio; Andrea Pizzi; Miriam Calabrese; Giancarlo Terraneo; Simone Bordignon; Antonio Frontera Journal: Angew Chem Int Ed Engl Date: 2021-07-14 Impact factor: 15.336
Authors: Hitler Louis; ThankGod C Egemonye; Tomsmith O Unimuke; Bassey E Inah; Henry O Edet; Ededet A Eno; Stephen A Adalikwu; Adedapo S Adeyinka Journal: ACS Omega Date: 2022-09-19