Literature DB >> 28139675

Win-win data sharing in neuroscience.

Giorgio A Ascoli1, Patricia Maraver1, Sumit Nanda1, Sridevi Polavaram1, Rubén Armañanzas1.   

Abstract

Most neuroscientists have yet to embrace a culture of data sharing. Using our decade-long experience at NeuroMorpho.Org as an example, we discuss how publicly available repositories may benefit data producers and end-users alike. We outline practical recipes for resource developers to maximize the research impact of data sharing platforms for both contributors and users.

Entities:  

Mesh：

Year:  2017        PMID： 28139675      PMCID： PMC5503136          DOI： 10.1038/nmeth.4152

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  24 in total

1.  Data sharing for computational neuroscience.

Authors:  Jeffrey L Teeters; Kenneth D Harris; K Jarrod Millman; Bruno A Olshausen; Friedrich T Sommer
Journal:  Neuroinformatics       Date:  2008-02-08

2.  Enabling an Open Data Ecosystem for the Neurosciences.

Authors:  Martin Wiener; Friedrich T Sommer; Zachary G Ives; Russell A Poldrack; Brian Litt
Journal:  Neuron       Date:  2016-11-02       Impact factor: 17.173

Review 3.  Automated Neuron Tracing Methods: An Updated Account.

Authors:  Ludovica Acciai; Paolo Soda; Giulio Iannello
Journal:  Neuroinformatics       Date:  2016-10

4.  Power to the People: Addressing Big Data Challenges in Neuroscience by Creating a New Cadre of Citizen Neuroscientists.

Authors:  Jane Roskams; Zoran Popović
Journal:  Neuron       Date:  2016-11-02       Impact factor: 17.173

5.  BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.

Authors:  Hanchuan Peng; Michael Hawrylycz; Jane Roskams; Sean Hill; Nelson Spruston; Erik Meijering; Giorgio A Ascoli
Journal:  Neuron       Date:  2015-07-15       Impact factor: 17.173

6.  The importance of metadata to assess information content in digital reconstructions of neuronal morphology.

Authors:  Ruchi Parekh; Rubén Armañanzas; Giorgio A Ascoli
Journal:  Cell Tissue Res       Date:  2015-02-05       Impact factor: 5.249

Review 7.  Neuronal morphology goes digital: a research hub for cellular and system neuroscience.

Authors:  Ruchi Parekh; Giorgio A Ascoli
Journal:  Neuron       Date:  2013-03-20       Impact factor: 17.173

8.  Digital reconstructions of neuronal morphology: three decades of research trends.

Authors:  Maryam Halavi; Kelly A Hamilton; Ruchi Parekh; Giorgio A Ascoli
Journal:  Front Neurosci       Date:  2012-04-23       Impact factor: 4.677

9.  Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.

Authors:  Susan M Sunkin; Lydia Ng; Chris Lau; Tim Dolbeare; Terri L Gilbert; Carol L Thompson; Michael Hawrylycz; Chinh Dang
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

10.  Sharing Neuron Data: Carrots, Sticks, and Digital Records.

Authors:  Giorgio A Ascoli
Journal:  PLoS Biol       Date:  2015-10-08       Impact factor: 8.029
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  29 in total

1.  Highlights from the Era of Open Source Web-Based Tools.

Authors:  Kristin R Anderson; Julie A Harris; Lydia Ng; Pjotr Prins; Sara Memar; Bengt Ljungquist; Daniel Fürth; Robert W Williams; Giorgio A Ascoli; Dani Dumitriu
Journal:  J Neurosci       Date:  2021-01-20       Impact factor: 6.167

Review 2.  Neuronal cell-type classification: challenges, opportunities and the path forward.

Authors:  Hongkui Zeng; Joshua R Sanes
Journal:  Nat Rev Neurosci       Date:  2017-08-03       Impact factor: 34.870

3.  Turning the Tide of Data Sharing.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2019-10

4.  Survey of Investigators About Sharing Human Research Data in the Neurosciences.

Authors:  Saskia Hendriks; Khara M Ramos; Christine Grady
Journal:  Neurology       Date:  2022-08-18       Impact factor: 11.800

5.  Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains.

Authors:  Shengdian Jiang; Yimin Wang; Lijuan Liu; Liya Ding; Zongcai Ruan; Hong-Wei Dong; Giorgio A Ascoli; Michael Hawrylycz; Hongkui Zeng; Hanchuan Peng
Journal:  Neuroinformatics       Date:  2022-02-19

Review 6.  International data governance for neuroscience.

Authors:  Damian O Eke; Amy Bernard; Jan G Bjaalie; Ricardo Chavarriaga; Takashi Hanakawa; Anthony J Hannan; Sean L Hill; Maryann E Martone; Agnes McMahon; Oliver Ruebel; Sharon Crook; Edda Thiels; Franco Pestilli
Journal:  Neuron       Date:  2021-12-15       Impact factor: 18.688

Review 7.  Constructing the rodent stereotaxic brain atlas: a survey.

Authors:  Zhao Feng; Anan Li; Hui Gong; Qingming Luo
Journal:  Sci China Life Sci       Date:  2021-04-13       Impact factor: 6.038

8.  Efficient metadata mining of web-accessible neural morphologies.

Authors:  Masood A Akram; Bengt Ljungquist; Giorgio A Ascoli
Journal:  Prog Biophys Mol Biol       Date:  2021-05-19       Impact factor: 3.667

9.  A neuronal blueprint for directional mechanosensation in larval zebrafish.

Authors:  Gema Valera; Daniil A Markov; Kayvan Bijari; Owen Randlett; Amir Asgharsharghi; Jean-Pierre Baudoin; Giorgio A Ascoli; Ruben Portugues; Hernán López-Schier
Journal:  Curr Biol       Date:  2021-02-04       Impact factor: 10.834

10.  Design and implementation of multi-signal and time-varying neural reconstructions.

Authors:  Sumit Nanda; Hanbo Chen; Ravi Das; Shatabdi Bhattacharjee; Hermann Cuntz; Benjamin Torben-Nielsen; Hanchuan Peng; Daniel N Cox; Erik De Schutter; Giorgio A Ascoli
Journal:  Sci Data       Date:  2018-01-23       Impact factor: 6.444
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