Literature DB >> 18259695

Data sharing for computational neuroscience.

Jeffrey L Teeters1, Kenneth D Harris, K Jarrod Millman, Bruno A Olshausen, Friedrich T Sommer.   

Abstract

Computational neuroscience is a subfield of neuroscience that develops models to integrate complex experimental data in order to understand brain function. To constrain and test computational models, researchers need access to a wide variety of experimental data. Much of those data are not readily accessible because neuroscientists fall into separate communities that study the brain at different levels and have not been motivated to provide data to researchers outside their community. To foster sharing of neuroscience data, a workshop was held in 2007, bringing together experimental and theoretical neuroscientists, computer scientists, legal experts and governmental observers. Computational neuroscience was recommended as an ideal field for focusing data sharing, and specific methods, strategies and policies were suggested for achieving it. A new funding area in the NSF/NIH Collaborative Research in Computational Neuroscience (CRCNS) program has been established to support data sharing, guided in part by the workshop recommendations. The new funding area is dedicated to the dissemination of high quality data sets with maximum scientific value for computational neuroscience. The first round of the CRCNS data sharing program supports the preparation of data sets which will be publicly available in 2008. These include electrophysiology and behavioral (eye movement) data described towards the end of this article.

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Year:  2008        PMID: 18259695     DOI: 10.1007/s12021-008-9009-y

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  12 in total

1.  Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements.

Authors:  K D Harris; D A Henze; J Csicsvari; H Hirase; G Buzsáki
Journal:  J Neurophysiol       Date:  2000-07       Impact factor: 2.714

2.  Spike train dynamics predicts theta-related phase precession in hippocampal pyramidal cells.

Authors:  Kenneth D Harris; Darrell A Henze; Hajime Hirase; Xavier Leinekugel; George Dragoi; Andras Czurkó; György Buzsáki
Journal:  Nature       Date:  2002-06-13       Impact factor: 49.962

3.  Organization of cell assemblies in the hippocampus.

Authors:  Kenneth D Harris; Jozsef Csicsvari; Hajime Hirase; George Dragoi; György Buzsáki
Journal:  Nature       Date:  2003-07-31       Impact factor: 49.962

4.  Neurodatabase.org: networking the microelectrode.

Authors:  Daniel Gardner
Journal:  Nat Neurosci       Date:  2004-05       Impact factor: 24.884

5.  Towards effective and rewarding data sharing.

Authors:  Daniel Gardner; Arthur W Toga; Giorgio A Ascoli; Jackson T Beatty; James F Brinkley; Anders M Dale; Peter T Fox; Esther P Gardner; John S George; Nigel Goddard; Kristen M Harris; Edward H Herskovits; Michael L Hines; Gwen A Jacobs; Russell E Jacobs; Edward G Jones; David N Kennedy; Daniel Y Kimberg; John C Mazziotta; Perry L Miller; Susumu Mori; David C Mountain; Allan L Reiss; Glenn D Rosen; David A Rottenberg; Gordon M Shepherd; Neil R Smalheiser; Kenneth P Smith; Tom Strachan; David C Van Essen; Robert W Williams; Stephen T C Wong
Journal:  Neuroinformatics       Date:  2003

6.  Where's the beef ? Missing data in the information age.

Authors:  David Kennedy
Journal:  Neuroinformatics       Date:  2006

7.  The ups and downs of neuroscience shares.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2006

8.  Global neuroinformatics: the International Neuroinformatics Coordinating Facility.

Authors:  Jan G Bjaalie; Sten Grillner
Journal:  J Neurosci       Date:  2007-04-04       Impact factor: 6.167

Review 9.  Mapping the human brain: new insights from FMRI data sharing.

Authors:  John Darrell Van Horn; Alumit Ishai
Journal:  Neuroinformatics       Date:  2007

10.  Value added by data sharing: long-term potentiation of neuroscience research. A commentary on the 2007 SfN Satellite Symposium on data sharing.

Authors:  Yuan Liu; Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2007
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  53 in total

1.  A formal mathematical framework for physiological observations, experiments and analyses.

Authors:  Thomas A Nielsen; Henrik Nilsson; Tom Matheson
Journal:  J R Soc Interface       Date:  2011-10-05       Impact factor: 4.118

Review 2.  Data publishing and scientific journals: the future of the scientific paper in a world of shared data.

Authors:  Erik De Schutter
Journal:  Neuroinformatics       Date:  2010-10

3.  A Digital Repository and Execution Platform for Interactive Scholarly Publications in Neuroscience.

Authors:  Victoria Hodge; Mark Jessop; Martyn Fletcher; Michael Weeks; Aaron Turner; Tom Jackson; Colin Ingram; Leslie Smith; Jim Austin
Journal:  Neuroinformatics       Date:  2016-01

4.  Interacting with the National Database for Autism Research (NDAR) via the LONI Pipeline workflow environment.

Authors:  Carinna M Torgerson; Catherine Quinn; Ivo Dinov; Zhizhong Liu; Petros Petrosyan; Kevin Pelphrey; Christian Haselgrove; David N Kennedy; Arthur W Toga; John Darrell Van Horn
Journal:  Brain Imaging Behav       Date:  2015-03       Impact factor: 3.978

5.  Understanding complexity in the human brain.

Authors:  Danielle S Bassett; Michael S Gazzaniga
Journal:  Trends Cogn Sci       Date:  2011-04-14       Impact factor: 20.229

6.  Neuroinformatics grand challenges.

Authors:  Giorgio A Ascoli
Journal:  Neuroinformatics       Date:  2008

7.  Musings of a post-stimulus mind...

Authors:  David N Kennedy
Journal:  Neuroinformatics       Date:  2009-05-12

8.  Reviewing multi-disciplinary papers: a challenge in neuroscience?

Authors:  Erik De Schutter
Journal:  Neuroinformatics       Date:  2008-10-21

9.  A neuroinformatics of brain modeling and its implementation in the Brain Operation Database BODB.

Authors:  Michael A Arbib; Anon Plangprasopchok; James Bonaiuto; Robert E Schuler
Journal:  Neuroinformatics       Date:  2014-01

Review 10.  Towards the automatic classification of neurons.

Authors:  Rubén Armañanzas; Giorgio A Ascoli
Journal:  Trends Neurosci       Date:  2015-03-09       Impact factor: 13.837

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