Literature DB >> 2813394

Hydrophobic effect in protein folding and other noncovalent processes involving proteins.

R S Spolar1, J H Ha, M T Record.   

Abstract

Large negative standard heat capacity changes (delta CP degree much less than 0) are the hallmark of processes that remove nonpolar surface from water, including the transfer of nonpolar solutes from water to a nonaqueous phase and the folding, aggregation/association, and ligand-binding reactions of proteins [Sturtevant, J. M. (1977) Proc. Natl. Acad. Sci. USA 74, 2236-2240]. More recently, Baldwin [Baldwin, R. L. (1986) Proc. Natl. Acad. Sci. USA 83, 8069-8072] proposed that the delta CP degree of protein folding could be used to quantify the contribution of the burial of nonpolar surface (the hydrophobic effect) to the stability of a globular protein. We demonstrate that identical correlations between the delta CP degree and the change in water-accessible nonpolar surface area (delta Anp) are obtained for both the transfer of nonpolar solutes from water to the pure liquid phase and the folding of small globular proteins: delta CP degree/delta Anp = -(0.28 +/- 0.05) (where delta Anp is expressed in A2 and delta CP degree is expressed in cal.mol-1.K-1; 1 cal = 4.184 J). The fact that these correlations are identical validates the proposals by both Sturtevant and Baldwin that the hydrophobic effect is in general the dominant contributor to delta CP degree and provides a straightforward means of estimating the contribution of the hydrophobic driving force (delta Ghyd degree) to the standard free energy change of a noncovalent process characterized by a large negative delta CP degree in the physiological temperature range: delta Ghyd degree congruent to (80 +/- 10)delta CP degree.

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Year:  1989        PMID: 2813394      PMCID: PMC298285          DOI: 10.1073/pnas.86.21.8382

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Heat capacity and conformation of proteins in the denatured state.

Authors:  P L Privalov; E I Tiktopulo; G I Makhatadze; N N Khechinashvili
Journal:  J Mol Biol       Date:  1989-02-20       Impact factor: 5.469

Review 2.  Stability of protein structure and hydrophobic interaction.

Authors:  P L Privalov; S J Gill
Journal:  Adv Protein Chem       Date:  1988

3.  Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides.

Authors:  T Ooi; M Oobatake; G Némethy; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1987-05       Impact factor: 11.205

Review 4.  The thermodynamic stability of proteins.

Authors:  J A Schellman
Journal:  Annu Rev Biophys Biophys Chem       Date:  1987

5.  Contribution of hydrophobic interactions to protein stability.

Authors:  J T Kellis; K Nyberg; D Sali; A R Fersht
Journal:  Nature       Date:  1988-06-23       Impact factor: 49.962

Review 6.  Interactions of water with nonpolar solutes.

Authors:  A Hvidt
Journal:  Annu Rev Biophys Bioeng       Date:  1983

7.  Hydrophobicity of amino acid residues in globular proteins.

Authors:  G D Rose; A R Geselowitz; G J Lesser; R H Lee; M H Zehfus
Journal:  Science       Date:  1985-08-30       Impact factor: 47.728

Review 8.  Stability of proteins: small globular proteins.

Authors:  P L Privalov
Journal:  Adv Protein Chem       Date:  1979

9.  Empirical correlation between hydrophobic free energy and aqueous cavity surface area.

Authors:  J A Reynolds; D B Gilbert; C Tanford
Journal:  Proc Natl Acad Sci U S A       Date:  1974-08       Impact factor: 11.205

10.  An equation of state describing hydrophobic interactions.

Authors:  S J Gill; I Wadsö
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

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  59 in total

1.  Comparison of binding energies of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization.

Authors:  D A Henriques; J E Ladbury; R M Jackson
Journal:  Protein Sci       Date:  2000-10       Impact factor: 6.725

2.  Energetics of the HIV gp120-CD4 binding reaction.

Authors:  D G Myszka; R W Sweet; P Hensley; M Brigham-Burke; P D Kwong; W A Hendrickson; R Wyatt; J Sodroski; M L Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

3.  Heat capacity changes upon burial of polar and nonpolar groups in proteins.

Authors:  V V Loladze; D N Ermolenko; G I Makhatadze
Journal:  Protein Sci       Date:  2001-07       Impact factor: 6.725

4.  Effect of calcium ions on the irreversible denaturation of a recombinant Bacillus halmapalus alpha-amylase: a calorimetric investigation.

Authors:  Anders D Nielsen; Claus C Fuglsang; Peter Westh
Journal:  Biochem J       Date:  2003-07-15       Impact factor: 3.857

5.  Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function.

Authors:  Cosmin Saveanu; Simona Miron; Tudor Borza; Constantin T Craescu; Gilles Labesse; Cristina Gagyi; Aurel Popescu; Francis Schaeffer; Abdelkader Namane; Christine Laurent-Winter; Octavian Bârzu; Anne-Marie Gilles
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

6.  Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework.

Authors:  Jeremy L England; Vijay S Pande
Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

7.  Differential geometry based solvation model II: Lagrangian formulation.

Authors:  Zhan Chen; Nathan A Baker; G W Wei
Journal:  J Math Biol       Date:  2011-01-30       Impact factor: 2.259

8.  Heat capacity changes and hydrophobic interactions in the binding of FK506 and rapamycin to the FK506 binding protein.

Authors:  P R Connelly; J A Thomson
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-01       Impact factor: 11.205

9.  Nucleation of an allosteric response via ligand-induced loop folding.

Authors:  Saranga Naganathan; Dorothy Beckett
Journal:  J Mol Biol       Date:  2007-07-26       Impact factor: 5.469

10.  Temperature stability of proteins: Analysis of irreversible denaturation using isothermal calorimetry.

Authors:  Arne Schön; Benjamin R Clarkson; Maria Jaime; Ernesto Freire
Journal:  Proteins       Date:  2017-08-08
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