Literature DB >> 28112723

Global and regional dissemination and evolution of Burkholderia pseudomallei.

Claire Chewapreecha1,2,3, Matthew T G Holden2,4, Minna Vehkala5, Niko Välimäki6, Zhirong Yang5, Simon R Harris2, Alison E Mather7, Apichai Tuanyok8, Birgit De Smet9,10, Simon Le Hello11, Chantal Bizet12, Mark Mayo13, Vanaporn Wuthiekanun14, Direk Limmathurotsakul14,15,16, Rattanaphone Phetsouvanh17, Brian G Spratt18, Jukka Corander5,19, Paul Keim20, Gordon Dougan1,2, David A B Dance16,17,21, Bart J Currie13, Julian Parkhill2, Sharon J Peacock1,2,21.   

Abstract

The environmental bacterium Burkholderia pseudomallei causes an estimated 165,000 cases of human melioidosis per year worldwide and is also classified as a biothreat agent. We used whole genome sequences of 469 B. pseudomallei isolates from 30 countries collected over 79 years to explore its geographic transmission. Our data point to Australia as an early reservoir, with transmission to Southeast Asia followed by onward transmission to South Asia and East Asia. Repeated reintroductions were observed within the Malay Peninsula and between countries bordered by the Mekong River. Our data support an African origin of the Central and South American isolates with introduction of B. pseudomallei into the Americas between 1650 and 1850, providing a temporal link with the slave trade. We also identified geographically distinct genes/variants in Australasian or Southeast Asian isolates alone, with virulence-associated genes being among those over-represented. This provides a potential explanation for clinical manifestations of melioidosis that are geographically restricted.

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Year:  2017        PMID: 28112723      PMCID: PMC5300093          DOI: 10.1038/nmicrobiol.2016.263

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  51 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

2.  Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.

Authors:  Matthew T G Holden; Richard W Titball; Sharon J Peacock; Ana M Cerdeño-Tárraga; Timothy Atkins; Lisa C Crossman; Tyrone Pitt; Carol Churcher; Karen Mungall; Stephen D Bentley; Mohammed Sebaihia; Nicholas R Thomson; Nathalie Bason; Ifor R Beacham; Karen Brooks; Katherine A Brown; Nat F Brown; Greg L Challis; Inna Cherevach; Tracy Chillingworth; Ann Cronin; Ben Crossett; Paul Davis; David DeShazer; Theresa Feltwell; Audrey Fraser; Zahra Hance; Heidi Hauser; Simon Holroyd; Kay Jagels; Karen E Keith; Mark Maddison; Sharon Moule; Claire Price; Michael A Quail; Ester Rabbinowitsch; Kim Rutherford; Mandy Sanders; Mark Simmonds; Sirirurg Songsivilai; Kim Stevens; Sarinna Tumapa; Monkgol Vesaratchavest; Sally Whitehead; Corin Yeats; Bart G Barrell; Petra C F Oyston; Julian Parkhill
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-17       Impact factor: 11.205

3.  ACT: the Artemis Comparison Tool.

Authors:  Tim J Carver; Kim M Rutherford; Matthew Berriman; Marie-Adele Rajandream; Barclay G Barrell; Julian Parkhill
Journal:  Bioinformatics       Date:  2005-06-23       Impact factor: 6.937

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions.

Authors:  Apichai Tuanyok; Raymond K Auerbach; Thomas S Brettin; David C Bruce; A Christine Munk; J Chris Detter; Talima Pearson; Heidie Hornstra; Rasana W Sermswan; Vanaporn Wuthiekanun; Sharon J Peacock; Bart J Currie; Paul Keim; David M Wagner
Journal:  J Bacteriol       Date:  2007-10-12       Impact factor: 3.490

6.  SIMMAP: stochastic character mapping of discrete traits on phylogenies.

Authors:  Jonathan P Bollback
Journal:  BMC Bioinformatics       Date:  2006-02-23       Impact factor: 3.169

7.  ABACAS: algorithm-based automatic contiguation of assembled sequences.

Authors:  Samuel Assefa; Thomas M Keane; Thomas D Otto; Chris Newbold; Matthew Berriman
Journal:  Bioinformatics       Date:  2009-06-03       Impact factor: 6.937

8.  Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.

Authors:  Jukka Corander; Pekka Marttinen; Jukka Sirén; Jing Tang
Journal:  BMC Bioinformatics       Date:  2008-12-16       Impact factor: 3.169

9.  The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.

Authors:  Geoffrey L Winsor; Bhavjinder Khaira; Thea Van Rossum; Raymond Lo; Matthew D Whiteside; Fiona S L Brinkman
Journal:  Bioinformatics       Date:  2008-10-07       Impact factor: 6.937

10.  Genomic islands from five strains of Burkholderia pseudomallei.

Authors:  Apichai Tuanyok; Benjamin R Leadem; Raymond K Auerbach; Stephen M Beckstrom-Sternberg; James S Beckstrom-Sternberg; Mark Mayo; Vanaporn Wuthiekanun; Thomas S Brettin; William C Nierman; Sharon J Peacock; Bart J Currie; David M Wagner; Paul Keim
Journal:  BMC Genomics       Date:  2008-11-27       Impact factor: 3.969

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  60 in total

Review 1.  Novel multi-component vaccine approaches for Burkholderia pseudomallei.

Authors:  L Morici; A G Torres; R W Titball
Journal:  Clin Exp Immunol       Date:  2019-04-08       Impact factor: 4.330

Review 2.  Human Melioidosis.

Authors:  I Gassiep; M Armstrong; R Norton
Journal:  Clin Microbiol Rev       Date:  2020-03-11       Impact factor: 26.132

3.  Phylogenetic Characterization and Genome Sequence Analysis of Burkholderia glumae Strains Isolated in Thailand as the Causal Agent of Rice Bacterial Panicle Blight.

Authors:  Nootjarin Jungkhun; Antonio Roberto Gomes de Farias; Jutatape Watcharachaiyakup; Nuttima Kositcharoenkul; Jong Hyun Ham; Sujin Patarapuwadol
Journal:  Pathogens       Date:  2022-06-11

Review 4.  Melioidosis.

Authors:  W Joost Wiersinga; Harjeet S Virk; Alfredo G Torres; Bart J Currie; Sharon J Peacock; David A B Dance; Direk Limmathurotsakul
Journal:  Nat Rev Dis Primers       Date:  2018-02-01       Impact factor: 52.329

5.  Burkholderia pseudomallei as an Enteric Pathogen: Identification of Virulence Factors Mediating Gastrointestinal Infection.

Authors:  Javier I Sanchez-Villamil; Daniel Tapia; Grace I Borlee; Bradley R Borlee; David H Walker; Alfredo G Torres
Journal:  Infect Immun       Date:  2020-12-15       Impact factor: 3.441

6.  Kill and cure: genomic phylogeny and bioactivity of Burkholderia gladioli bacteria capable of pathogenic and beneficial lifestyles.

Authors:  Cerith Jones; Gordon Webster; Alex J Mullins; Matthew Jenner; Matthew J Bull; Yousef Dashti; Theodore Spilker; Julian Parkhill; Thomas R Connor; John J LiPuma; Gregory L Challis; Eshwar Mahenthiralingam
Journal:  Microb Genom       Date:  2021-01

7.  Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere.

Authors:  Jay E Gee; Christopher A Gulvik; Mindy G Elrod; Dhwani Batra; Lori A Rowe; Mili Sheth; Alex R Hoffmaster
Journal:  Emerg Infect Dis       Date:  2017-07       Impact factor: 6.883

8.  Suspected cases of intracontinental Burkholderia pseudomallei sequence type homoplasy resolved using whole-genome sequencing.

Authors:  Ammar Aziz; Derek S Sarovich; Tegan M Harris; Mirjam Kaestli; Evan McRobb; Mark Mayo; Bart J Currie; Erin P Price
Journal:  Microb Genom       Date:  2017-11

9.  Trimethoprim+Sulfamethoxazole Reduces Rates of Melioidosis in High-Risk Hemodialysis Patients.

Authors:  Sandawana William Majoni; Jaquelyne T Hughes; Bianca Heron; Bart J Currie
Journal:  Kidney Int Rep       Date:  2017-09-20

10.  A multi-country study using MALDI-TOF mass spectrometry for rapid identification of Burkholderia pseudomallei.

Authors:  Wanitda Watthanaworawit; Tamalee Roberts; Jill Hopkins; Ian Gassiep; Robert Norton; Matthew T Robinson; Joy Silisouk; Poda Sar; Sena Sao; Premjit Amornchai; Direk Limmathurotsakul; Vanaporn Wuthiekanun; Francois Nosten; Andrew J H Simpson; Paul Turner; Clare L Ling
Journal:  BMC Microbiol       Date:  2021-07-16       Impact factor: 3.605

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