Literature DB >> 15976072

ACT: the Artemis Comparison Tool.

Tim J Carver1, Kim M Rutherford, Matthew Berriman, Marie-Adele Rajandream, Barclay G Barrell, Julian Parkhill.   

Abstract

The Artemis Comparison Tool (ACT) allows an interactive visualisation of comparisons between complete genome sequences and associated annotations. The comparison data can be generated with several different programs; BLASTN, TBLASTX or Mummer comparisons between genomic DNA sequences, or orthologue tables generated by reciprocal FASTA comparison between protein sets. It is possible to identify regions of similarity, insertions and rearrangements at any level from the whole genome to base-pair differences. ACT uses Artemis components to display the sequences and so inherits powerful searching and analysis tools. ACT is part of the Artemis distribution and is similarly open source, written in Java and can run on any Java enabled platform, including UNIX, Macintosh and Windows.

Mesh：

Year:  2005        PMID： 15976072     DOI： 10.1093/bioinformatics/bti553

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  896 in total

1.  Evidence for the horizontal transfer of an unusual capsular polysaccharide biosynthesis locus in marine bacteria.

Authors:  Alina Nakhamchik; Caroline Wilde; Henry Chong; Dean A Rowe-Magnus
Journal:  Infect Immun       Date:  2010-10-04       Impact factor: 3.441

2.  AcGI1, a novel genomic island carrying antibiotic resistance integron In687 in multidrug resistant Achromobacter xylosoxidans in a teaching hospital in Thailand.

Authors:  Pisut Pongchaikul; Pitak Santanirand; Svetlana Antonyuk; Craig Winstanley; Alistair C Darby
Journal:  FEMS Microbiol Lett       Date:  2020-07-01       Impact factor: 2.742

3.  Genome sequence of Bifidobacterium breve DPC 6330, a strain isolated from the human intestine.

Authors:  Caitriona M Guinane; Eoin Barrett; Gerald F Fitzgerald; Douwe van Sinderen; R Paul Ross; Catherine Stanton
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

4.  Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6.

Authors:  Anna M Kielak; Johannes A van Veen; George A Kowalchuk
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

Review 5.  Detecting genomic islands using bioinformatics approaches.

Authors:  Morgan G I Langille; William W L Hsiao; Fiona S L Brinkman
Journal:  Nat Rev Microbiol       Date:  2010-05       Impact factor: 60.633

6.  Complete genome sequence of type strain Campylobacter fetus subsp. venerealis NCTC 10354T.

Authors:  Ana Paula Reinato Stynen; Andrey Pereira Lage; Robert J Moore; Antonio Mauro Rezende; Vivian D'Afonseca da Silva de Resende; Patricia de Cássia Ruy; Nesley Daher; Daniela de Melo Resende; Sintia Silva de Almeida; Siomar de Castro Soares; Vinicius Augusto Carvalho de Abreu; Aryane Aparecida C Magalhães Rocha; Anderson Rodrigues dos Santos; Eudes Guilherme Vieira Barbosa; Danielle Fonseca Costa; Fernanda Alves Dorella; Anderson Miyoshi; Alex Ranieri Jerônimo de Lima; Frederico Davi da Silva Campos; Pablo Gomes de Sá; Thiago Souza Lopes; Ryan Mauricio Araujo Rodrigues; Adriana Ribeiro Carneiro; Thiago Leão; Louise Teixeira Cerdeira; Rommel Thiago Jucá Ramos; Artur Silva; Vasco Azevedo; Jerônimo C Ruiz
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

7.  Predicted functions and linkage specificities of the products of the Streptococcus pneumoniae capsular biosynthetic loci.

Authors:  David M Aanensen; Angeliki Mavroidi; Stephen D Bentley; Peter R Reeves; Brian G Spratt
Journal:  J Bacteriol       Date:  2007-08-31       Impact factor: 3.490

8.  Genetic relatedness of the Streptococcus pneumoniae capsular biosynthetic loci.

Authors:  Angeliki Mavroidi; David M Aanensen; Daniel Godoy; Ian C Skovsted; Margit S Kaltoft; Peter R Reeves; Stephen D Bentley; Brian G Spratt
Journal:  J Bacteriol       Date:  2007-08-31       Impact factor: 3.490

9.  Characterization and genome sequencing of phage Abp1, a new phiKMV-like virus infecting multidrug-resistant Acinetobacter baumannii.

Authors:  Guangtao Huang; Shuai Le; Yizhi Peng; Yan Zhao; Supeng Yin; Lin Zhang; Xinyue Yao; Yinling Tan; Ming Li; Fuquan Hu
Journal:  Curr Microbiol       Date:  2013-01-18       Impact factor: 2.188

10.  Disruption of tetR type regulator adeN by mobile genetic element confers elevated virulence in Acinetobacter baumannii.

Authors:  Rajagopalan Saranathan; Sudhakar Pagal; Ajit R Sawant; Archana Tomar; M Madhangi; Suresh Sah; Annapurna Satti; K P Arunkumar; K Prashanth
Journal:  Virulence       Date:  2017-04-24       Impact factor: 5.882
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