Literature DB >> 28095202

Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings.

Anup Das1, Aaron L Sampson2, Claudia Lainscsek3, Lyle Muller4, Wutu Lin5, John C Doyle6, Sydney S Cash7, Eric Halgren8, Terrence J Sejnowski9.   

Abstract

The correlation method from brain imaging has been used to estimate functional connectivity in the human brain. However, brain regions might show very high correlation even when the two regions are not directly connected due to the strong interaction of the two regions with common input from a third region. One previously proposed solution to this problem is to use a sparse regularized inverse covariance matrix or precision matrix (SRPM) assuming that the connectivity structure is sparse. This method yields partial correlations to measure strong direct interactions between pairs of regions while simultaneously removing the influence of the rest of the regions, thus identifying regions that are conditionally independent. To test our methods, we first demonstrated conditions under which the SRPM method could indeed find the true physical connection between a pair of nodes for a spring-mass example and an RC circuit example. The recovery of the connectivity structure using the SRPM method can be explained by energy models using the Boltzmann distribution. We then demonstrated the application of the SRPM method for estimating brain connectivity during stage 2 sleep spindles from human electrocorticography (ECoG) recordings using an [Formula: see text] electrode array. The ECoG recordings that we analyzed were from a 32-year-old male patient with long-standing pharmaco-resistant left temporal lobe complex partial epilepsy. Sleep spindles were automatically detected using delay differential analysis and then analyzed with SRPM and the Louvain method for community detection. We found spatially localized brain networks within and between neighboring cortical areas during spindles, in contrast to the case when sleep spindles were not present.

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Year:  2017        PMID: 28095202      PMCID: PMC5424817          DOI: 10.1162/NECO_a_00936

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  64 in total

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Authors:  Bingni W Brunton; Lise A Johnson; Jeffrey G Ojemann; J Nathan Kutz
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2.  Sleep spindles and learning potential.

Authors:  S M Fogel; R Nader; K A Cote; C T Smith
Journal:  Behav Neurosci       Date:  2007-02       Impact factor: 1.912

3.  Cortical network functional connectivity in the descent to sleep.

Authors:  Linda J Larson-Prior; John M Zempel; Tracy S Nolan; Fred W Prior; Abraham Z Snyder; Marcus E Raichle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-02       Impact factor: 11.205

4.  Multiresolution community detection for megascale networks by information-based replica correlations.

Authors:  Peter Ronhovde; Zohar Nussinov
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-14

5.  Weight-conserving characterization of complex functional brain networks.

Authors:  Mikail Rubinov; Olaf Sporns
Journal:  Neuroimage       Date:  2011-04-01       Impact factor: 6.556

6.  Improved estimation and interpretation of correlations in neural circuits.

Authors:  Dimitri Yatsenko; Krešimir Josić; Alexander S Ecker; Emmanouil Froudarakis; R James Cotton; Andreas S Tolias
Journal:  PLoS Comput Biol       Date:  2015-03-31       Impact factor: 4.475

7.  Increased amygdala and decreased dorsolateral prefrontal BOLD responses in unipolar depression: related and independent features.

Authors:  Greg J Siegle; Wesley Thompson; Cameron S Carter; Stuart R Steinhauer; Michael E Thase
Journal:  Biol Psychiatry       Date:  2006-10-06       Impact factor: 13.382

8.  Antidepressant effect on connectivity of the mood-regulating circuit: an FMRI study.

Authors:  Amit Anand; Yu Li; Yang Wang; Jingwei Wu; Sujuan Gao; Lubna Bukhari; Vincent P Mathews; Andrew Kalnin; Mark J Lowe
Journal:  Neuropsychopharmacology       Date:  2005-07       Impact factor: 7.853

Review 9.  Sleep-dependent memory consolidation and reconsolidation.

Authors:  Robert Stickgold; Matthew P Walker
Journal:  Sleep Med       Date:  2007-04-30       Impact factor: 3.492

10.  Rotating waves during human sleep spindles organize global patterns of activity that repeat precisely through the night.

Authors:  Lyle Muller; Giovanni Piantoni; Dominik Koller; Sydney S Cash; Eric Halgren; Terrence J Sejnowski
Journal:  Elife       Date:  2016-11-15       Impact factor: 8.140

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  4 in total

1.  Learning in brain-computer interface control evidenced by joint decomposition of brain and behavior.

Authors:  Jennifer Stiso; Marie-Constance Corsi; Jean M Vettel; Javier Garcia; Fabio Pasqualetti; Fabrizio De Vico Fallani; Timothy H Lucas; Danielle S Bassett
Journal:  J Neural Eng       Date:  2020-07-24       Impact factor: 5.379

2.  SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolution.

Authors:  Jingwan Wang; Shiying Li; Lingxi Chen; Shuai Cheng Li
Journal:  NAR Genom Bioinform       Date:  2022-09-15

3.  Heterogeneity of Preictal Dynamics in Human Epileptic Seizures.

Authors:  Anup DAS; Sydney S Cash; Terrence J Sejnowski
Journal:  IEEE Access       Date:  2020-03-16       Impact factor: 3.367

4.  Sleep spindles mediate hippocampal-neocortical coupling during long-duration ripples.

Authors:  Hong-Viet Ngo; Juergen Fell; Bernhard Staresina
Journal:  Elife       Date:  2020-07-13       Impact factor: 8.140

  4 in total

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