Literature DB >> 19658776

Multiresolution community detection for megascale networks by information-based replica correlations.

Peter Ronhovde1, Zohar Nussinov.   

Abstract

We use a Potts model community detection algorithm to accurately and quantitatively evaluate the hierarchical or multiresolution structure of a graph. Our multiresolution algorithm calculates correlations among multiple copies ("replicas") of the same graph over a range of resolutions. Significant multiresolution structures are identified by strongly correlated replicas. The average normalized mutual information, the variation in information, and other measures, in principle, give a quantitative estimate of the "best" resolutions and indicate the relative strength of the structures in the graph. Because the method is based on information comparisons, it can, in principle, be used with any community detection model that can examine multiple resolutions. Our approach may be extended to other optimization problems. As a local measure, our Potts model avoids the "resolution limit" that affects other popular models. With this model, our community detection algorithm has an accuracy that ranks among the best of currently available methods. Using it, we can examine graphs over 40 x10;{6} nodes and more than 1 x10;{9} edges. We further report that the multiresolution variant of our algorithm can solve systems of at least 200 000 nodes and 10 x 10;{6} edges on a single processor with exceptionally high accuracy. For typical cases, we find a superlinear scaling O(L1.3) for community detection and O(L1.3 log N) for the multiresolution algorithm, where L is the number of edges and N is the number of nodes in the system.

Year:  2009        PMID: 19658776     DOI: 10.1103/PhysRevE.80.016109

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  36 in total

1.  Detecting hidden spatial and spatio-temporal structures in glasses and complex physical systems by multiresolution network clustering.

Authors:  P Ronhovde; S Chakrabarty; D Hu; M Sahu; K K Sahu; K F Kelton; N A Mauro; Z Nussinov
Journal:  Eur Phys J E Soft Matter       Date:  2011-09-29       Impact factor: 1.890

2.  Stability of graph communities across time scales.

Authors:  J-C Delvenne; S N Yaliraki; M Barahona
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-30       Impact factor: 11.205

3.  Diffusion on networked systems is a question of time or structure.

Authors:  Jean-Charles Delvenne; Renaud Lambiotte; Luis E C Rocha
Journal:  Nat Commun       Date:  2015-06-09       Impact factor: 14.919

4.  The anatomical scaffold underlying the functional centrality of known cortical hubs.

Authors:  Francesco de Pasquale; Stefania Della Penna; Umberto Sabatini; Chiara Caravasso Falletta; Patrice Peran
Journal:  Hum Brain Mapp       Date:  2017-07-06       Impact factor: 5.038

5.  Machine-learning iterative calculation of entropy for physical systems.

Authors:  Amit Nir; Eran Sela; Roy Beck; Yohai Bar-Sinai
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-19       Impact factor: 11.205

Review 6.  Modular Brain Networks.

Authors:  Olaf Sporns; Richard F Betzel
Journal:  Annu Rev Psychol       Date:  2015-09-21       Impact factor: 24.137

Review 7.  How do dynamic cellular signals travel long distances?

Authors:  Ruth Nussinov
Journal:  Mol Biosyst       Date:  2011-07-18

8.  Automatic segmentation of fluorescence lifetime microscopy images of cells using multiresolution community detection--a first study.

Authors:  D Hu; P Sarder; P Ronhovde; S Orthaus; S Achilefu; Z Nussinov
Journal:  J Microsc       Date:  2013-11-19       Impact factor: 1.758

9.  The function of communities in protein interaction networks at multiple scales.

Authors:  Anna C F Lewis; Nick S Jones; Mason A Porter; Charlotte M Deane
Journal:  BMC Syst Biol       Date:  2010-07-22

10.  Hierarchical modularity in human brain functional networks.

Authors:  David Meunier; Renaud Lambiotte; Alex Fornito; Karen D Ersche; Edward T Bullmore
Journal:  Front Neuroinform       Date:  2009-10-30       Impact factor: 4.081

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