| Literature DB >> 28093976 |
Maykel Cruz-Monteagudo1,2, Fernanda Borges1, M Natalia D S Cordeiro3, Aliuska Morales Helguera4, Eduardo Tejera2, Cesar Paz-Y-Mino2, Aminael Sanchez-Rodriguez5, Yunier Perera-Sardina6, Yunierkis Perez-Castillo4,7.
Abstract
BACKGROUND: In the context of the current drug discovery efforts to find disease modifying therapies for Parkinson's disease (PD) the current single target strategy has proved inefficient. Consequently, the search for multi-potent agents is attracting more and more attention due to the multiple pathogenetic factors implicated in PD. Multiple evidences points to the dual inhibition of the monoamine oxidase B (MAO-B), as well as adenosine A2A receptor (A2AAR) blockade, as a promising approach to prevent the neurodegeneration involved in PD. Currently, only two chemical scaffolds has been proposed as potential dual MAO-B inhibitors/A2AAR antagonists (caffeine derivatives and benzothiazinones).Entities:
Keywords: A2A adenosine receptor; chemoinformatics; chromones; dual-target binder; monoamine oxidase B; parkinson'szzm321990disease.
Mesh:
Substances:
Year: 2017 PMID: 28093976 PMCID: PMC5725544 DOI: 10.2174/1570159X15666170116145316
Source DB: PubMed Journal: Curr Neuropharmacol ISSN: 1570-159X Impact factor: 7.363
Fig. (1)Molecular structure of the chromone analogs used for molecular docking and the corresponding dual MAO-B/A2AAR benzothiazinone and caffeine derivatives used as templates.
Fig. (2)Benzothiazinone and caffeine derivatives used as reference set for the GFSS virtual screening approach.
Fig. (5)SAR pathway comprising representative caffeine derivatives in terms of spacer diversity. Green/yellow nodes represent compounds of low/high dual binding desirability. Nodes are colour-coded and positioned in the graph according to the compound´s dual binding desirability (values provided in the scale bar). The molecular structures and the MAO-B IC50/A2AAR Ki values of the caffeine derivatives represented by individual nodes in the SAR pathway are shown.
Fig. (8)SAR pathway comprising representative benzothiazinone analogs. Green/red nodes represent compounds of low/very high dual binding desirability. Nodes are colour-coded and positioned in the graph according to the compound´s dual binding desirability (values provided in the scale bar). The molecular structures and the MAO-B IC50/A2AAR Ki(D) values of the benzothiazinone analogs represented by individual nodes in the SAR pathway are provided.
Fig. (9)Superposition, in stereo view, of the predicted binding mode of chromone candidates 1 (a) and 2 (b) to the A The chromone candidates 1 and 2 are reported in cyan carbon sticks and the crystallographic ligand (ZM241385) is reported in magenta carbon sticks.
Fig. (10)Superposition, in stereo view, of the predicted binding mode of chromone candidates 1 (a) and 2 (b) to the MAO-B enzyme (PDB code 2V61). The chromone candidates 1 and 2 are reported in cyan carbon sticks and the crystallographic ligand (7-(3-chlorobenzyloxy)-4-(methylamino)methyl-coumarin) is reported in magenta carbon sticks.
Fig. (12)Scheme applied to assemble the focused combinatorial library.
Relative error associated to the enrichment metrics derived from the dataset used to estimate the enrichment performance of the GFSS approach.
| Dataset Size and Composition | |||
|---|---|---|---|
|
|
|
| |
| 558 | 11 | 0.0197 | |
| Relative Error (%) associated to Enrichment Metrics | |||
| 2.87 | 2.65 | 7.04 | |
| 1.30 | 1.16 | 1.35 | |
| 0.88 | 0.79 | 0.63 | |
| 0.59 | 0.52 | 0.27 | |
| 0.18 | |||
| 0.18 | |||
Virtual screening performance metrics of the six different data fusion variants of the GFSS approach.a
|
|
|
| |
|---|---|---|---|
| 0.9497(±0.0017) | 0.7254(±0.0013) | 0.8768(±0.0016) | |
| 0.9585(±0.0017) | 0.7298(±0.0013) | 0.8842(±0.0016) | |
| 0.0000(±0.0000) | 0.0000(±0.0000) | ||
| 8.9185(±0.1159) | 0.0000(±0.0000) | 6.4659(±0.0841) | |
| 0.0000(±0.0000) | 3.4485(±0.0305) | ||
| 0.9075(±0.0054) | 3.8475(±0.0227) | ||
| 4.4877(±0.1191) | 0.0000(±0.0000) | ||
| 8.9998(±0.1045) | 0.0420(±0.0005) | 7.0358(±0.0817) | |
| 7.8825(±0.0625) | 0.3884(±0.0031) | 5.1171(±0.0406) | |
| 5.4987(±0.0285) | 1.0757(±0.0056) | 3.7904(±0.0196) | |
| 0.0908(±0.0064) | 0.0000(±0.0000) | ||
| 0.3755(±0.0051) | 0.0018(±0.0000) | 0.2935(±0.0040) | |
| 0.5697(±0.0036) | 0.0281(±0.0002) | 0.3699(±0.0023) | |
| 0.7415(±0.0020) | 0.1447(±0.0004) | 0.5110(±0.0014) | |
| 0.7373(±0.0014) | 0.7603(±0.0014) | ||
| 0.7420(±0.0013) | 0.7655(±0.0014) | ||
| 0.0000(±0.0000) | 0.0000(±0.0000) | ||
| 0.0000(±0.0000) | 7.1348(±0.0927) | ||
| 0.0000(±0.0000) | 3.6300(±0.0322) | ||
| 0.9075(±0.0054) | 1.8150(±0.0107) | ||
| 7.3543(±0.1952) | 0.0000(±0.0000) | 0.4407(±0.0117) | |
| 0.0185(±0.0002) | 3.7784(±0.0439) | ||
| 0.3116(±0.0025) | 3.3290(±0.0264) | ||
| 1.0574(±0.0055) | 2.5035(±0.0130) | ||
| 0.1488(±0.0105) | 0.0000(±0.0000) | 0.0089(±0.0006) | |
| 0.0008(±0.0000) | 0.1576(±0.0021) | ||
| 0.0225(±0.0001) | 0.2406(±0.0015) | ||
| 0.1423(±0.0004) | 0.3374(±0.0009) | ||
: The relative error associated to each enrichment metric is reported. AUAC: area under the accumulation curve; ROC: area under the ROC curve; EF: enrichment factor at top 1%/5%/10%/20% fraction, respectively; RIE: robust initial enhancement at top 1%/5%/10%/20% fraction, respectively; BEDROC: Boltzmann-enhanced discrimination of ROC at top 1%/5%/10%/20% fraction, respectively.