Literature DB >> 28062046

Recent Advances in Biological Single-Molecule Applications of Optical Tweezers and Fluorescence Microscopy.

M Hashemi Shabestari1, A E C Meijering1, W H Roos2, G J L Wuite1, E J G Peterman3.   

Abstract

Over the past two decades, single-molecule techniques have evolved into robust tools to study many fundamental biological processes. The combination of optical tweezers with fluorescence microscopy and microfluidics provides a powerful single-molecule manipulation and visualization technique that has found widespread application in biology. In this combined approach, the spatial (~nm) and temporal (~ms) resolution, as well as the force scale (~pN) accessible to optical tweezers is complemented with the power of fluorescence microscopy. Thereby, it provides information on the local presence, identity, spatial dynamics, and conformational dynamics of single biomolecules. Together, these techniques allow comprehensive studies of, among others, molecular motors, protein-protein and protein-DNA interactions, biomolecular conformational changes, and mechanotransduction pathways. In this chapter, recent applications of fluorescence microscopy in combination with optical trapping are discussed. After an introductory section, we provide a description of instrumentation together with the current capabilities and limitations of the approaches. Next we summarize recent studies that applied this combination of techniques in biological systems and highlight some representative biological assays to mark the exquisite opportunities that optical tweezers combined with fluorescence microscopy provide.
© 2017 Elsevier Inc. All rights reserved.

Keywords:  Commercial solutions; DNA–protein interaction; Fluorescence microscopy; Mechanochemistry; Microfluidics; Molecular motors; Optical tweezers; Quadruple optical traps; STED super-resolution microscopy; Single molecule

Mesh:

Substances:

Year:  2016        PMID: 28062046     DOI: 10.1016/bs.mie.2016.09.047

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  20 in total

1.  Replication Fork Activation Is Enabled by a Single-Stranded DNA Gate in CMG Helicase.

Authors:  Michael R Wasserman; Grant D Schauer; Michael E O'Donnell; Shixin Liu
Journal:  Cell       Date:  2019-07-25       Impact factor: 41.582

2.  Protein-nucleic acids interactions: new ways of connecting structure, dynamics and function.

Authors:  Maria Spies; Brian O Smith
Journal:  Biophys Rev       Date:  2017-08-04

Review 3.  Expanding single-molecule fluorescence spectroscopy to capture complexity in biology.

Authors:  Junhong Choi; Rosslyn Grosely; Elisabetta V Puglisi; Joseph D Puglisi
Journal:  Curr Opin Struct Biol       Date:  2019-06-15       Impact factor: 6.809

4.  POTATO: Automated pipeline for batch analysis of optical tweezers data.

Authors:  Stefan Buck; Lukas Pekarek; Neva Caliskan
Journal:  Biophys J       Date:  2022-06-30       Impact factor: 3.699

Review 5.  Localized Nanopore Fabrication via Controlled Breakdown.

Authors:  Cuifeng Ying; Tianji Ma; Lei Xu; Mohsen Rahmani
Journal:  Nanomaterials (Basel)       Date:  2022-07-12       Impact factor: 5.719

6.  Optical trapping and fluorescence control with vectorial structured light.

Authors:  Ané Kritzinger; Andrew Forbes; Patricia B C Forbes
Journal:  Sci Rep       Date:  2022-10-21       Impact factor: 4.996

7.  Opto-Thermophoretic Attraction, Trapping, and Dynamic Manipulation of Lipid Vesicles.

Authors:  Eric H Hill; Jingang Li; Linhan Lin; Yaoran Liu; Yuebing Zheng
Journal:  Langmuir       Date:  2018-10-23       Impact factor: 3.882

Review 8.  Recent Advances on the Model, Measurement Technique, and Application of Single Cell Mechanics.

Authors:  Haibo Huang; Cihai Dai; Hao Shen; Mingwei Gu; Yangjun Wang; Jizhu Liu; Liguo Chen; Lining Sun
Journal:  Int J Mol Sci       Date:  2020-08-28       Impact factor: 5.923

9.  Molecular mechanism for direct actin force-sensing by α-catenin.

Authors:  Lin Mei; Santiago Espinosa de Los Reyes; Matthew J Reynolds; Rachel Leicher; Shixin Liu; Gregory M Alushin
Journal:  Elife       Date:  2020-09-24       Impact factor: 8.140

Review 10.  Tools for Genomic and Transcriptomic Analysis of Microbes at Single-Cell Level.

Authors:  Zixi Chen; Lei Chen; Weiwen Zhang
Journal:  Front Microbiol       Date:  2017-09-20       Impact factor: 5.640

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