Literature DB >> 28055186

Antimicrobials Inspired by Nonribosomal Peptide Synthetase Gene Clusters.

Xavier Vila-Farres1,2, John Chu1,2, Daigo Inoyama1,2, Melinda A Ternei1,2, Christophe Lemetre1,2, Louis J Cohen1,2, Wooyoung Cho1,2, Boojala Vijay B Reddy1,2, Henry A Zebroski1,2, Joel S Freundlich1,2, David S Perlin1,2, Sean F Brady1,2.   

Abstract

Bacterial culture broth extracts have been the starting point for the development of numerous therapeutics. However, only a small fraction of bacterial biosynthetic diversity is accessible using this strategy. Here, we apply a discovery approach that bypasses the culturing step entirely by bioinformatically predicting small molecule structures from the primary sequences of the biosynthetic gene clusters. These structures are then chemically synthesized to give synthetic-bioinformatic natural products (syn-BNPs). Using this approach, we screened syn-BNPs inspired by nonribosomal peptide synthetases against microbial pathogens, and discovered an antibiotic for which no resistance could be identified and an antifungal agent with activity against diverse fungal pathogens.

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Year:  2017        PMID: 28055186      PMCID: PMC7163397          DOI: 10.1021/jacs.6b11861

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases.

Authors:  T Stachelhaus; H D Mootz; M A Marahiel
Journal:  Chem Biol       Date:  1999-08

2.  Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.

Authors:  Yohsuke Minowa; Michihiro Araki; Minoru Kanehisa
Journal:  J Mol Biol       Date:  2007-03-14       Impact factor: 5.469

Review 3.  Entomopathogenic bacteria as a source of secondary metabolites.

Authors:  Helge B Bode
Journal:  Curr Opin Chem Biol       Date:  2009-04-01       Impact factor: 8.822

Review 4.  Approaches to capturing and designing biologically active small molecules produced by uncultured microbes.

Authors:  Jörn Piel
Journal:  Annu Rev Microbiol       Date:  2011       Impact factor: 15.500

Review 5.  Clinical relevance of the ESKAPE pathogens.

Authors:  Jack N Pendleton; Sean P Gorman; Brendan F Gilmore
Journal:  Expert Rev Anti Infect Ther       Date:  2013-03       Impact factor: 5.091

6.  Biochemical, structural, and genetic characterization of tridecaptin A₁, an antagonist of Campylobacter jejuni.

Authors:  Christopher T Lohans; Marco J van Belkum; Stephen A Cochrane; Zedu Huang; Clarissa S Sit; Lynn M McMullen; John C Vederas
Journal:  Chembiochem       Date:  2013-12-30       Impact factor: 3.164

7.  Nosocomial bloodstream infections due to Candida spp. in the USA: species distribution, clinical features and antifungal susceptibilities.

Authors:  Hilmar Wisplinghoff; Jenny Ebbers; Lea Geurtz; Danuta Stefanik; Yvette Major; Michael B Edmond; Richard P Wenzel; Harald Seifert
Journal:  Int J Antimicrob Agents       Date:  2013-10-12       Impact factor: 5.283

8.  Construction of soil environmental DNA cosmid libraries and screening for clones that produce biologically active small molecules.

Authors:  Sean F Brady
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

9.  NRPSpredictor2--a web server for predicting NRPS adenylation domain specificity.

Authors:  Marc Röttig; Marnix H Medema; Kai Blin; Tilmann Weber; Christian Rausch; Oliver Kohlbacher
Journal:  Nucleic Acids Res       Date:  2011-05-09       Impact factor: 16.971

10.  A roadmap for natural product discovery based on large-scale genomics and metabolomics.

Authors:  James R Doroghazi; Jessica C Albright; Anthony W Goering; Kou-San Ju; Robert R Haines; Konstantin A Tchalukov; David P Labeda; Neil L Kelleher; William W Metcalf
Journal:  Nat Chem Biol       Date:  2014-09-28       Impact factor: 15.040

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  17 in total

1.  Human Microbiome Inspired Antibiotics with Improved β-Lactam Synergy against MDR Staphylococcus aureus.

Authors:  John Chu; Xavier Vila-Farres; Daigo Inoyama; Ricardo Gallardo-Macias; Mark Jaskowski; Shruthi Satish; Joel S Freundlich; Sean F Brady
Journal:  ACS Infect Dis       Date:  2017-09-11       Impact factor: 5.084

Review 2.  Molecular Basis of Gut Microbiome-Associated Colorectal Cancer: A Synthetic Perspective.

Authors:  Alan R Healy; Seth B Herzon
Journal:  J Am Chem Soc       Date:  2017-10-12       Impact factor: 15.419

3.  Fixing the Unfixable: The Art of Optimizing Natural Products for Human Medicine.

Authors:  Audrey E Yñigez-Gutierrez; Brian O Bachmann
Journal:  J Med Chem       Date:  2019-04-26       Impact factor: 7.446

Review 4.  Strategies to access biosynthetic novelty in bacterial genomes for drug discovery.

Authors:  Franziska Hemmerling; Jörn Piel
Journal:  Nat Rev Drug Discov       Date:  2022-03-16       Impact factor: 84.694

5.  Synthetic-Bioinformatic Natural Product Antibiotics with Diverse Modes of Action.

Authors:  John Chu; Bimal Koirala; Nicholas Forelli; Xavier Vila-Farres; Melinda A Ternei; Thahmina Ali; Dominic A Colosimo; Sean F Brady
Journal:  J Am Chem Soc       Date:  2020-08-11       Impact factor: 15.419

6.  Synthetic Natural Product Inspired Cyclic Peptides.

Authors:  Matthew A Hostetler; Chloe Smith; Samantha Nelson; Zachary Budimir; Ramya Modi; Ian Woolsey; Autumn Frerk; Braden Baker; Jessica Gantt; Elizabeth I Parkinson
Journal:  ACS Chem Biol       Date:  2021-10-26       Impact factor: 5.100

Review 7.  Biocatalytic synthesis of peptidic natural products and related analogues.

Authors:  Dake Liu; Garret M Rubin; Dipesh Dhakal; Manyun Chen; Yousong Ding
Journal:  iScience       Date:  2021-05-04

Review 8.  The tridecaptins: non-ribosomal peptides that selectively target Gram-negative bacteria.

Authors:  Samantha J Bann; Ross D Ballantine; Stephen A Cochrane
Journal:  RSC Med Chem       Date:  2021-01-22

Review 9.  Mining and unearthing hidden biosynthetic potential.

Authors:  Kirstin Scherlach; Christian Hertweck
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

10.  Bioactive Synthetic-Bioinformatic Natural Product Cyclic Peptides Inspired by Nonribosomal Peptide Synthetase Gene Clusters from the Human Microbiome.

Authors:  John Chu; Xavier Vila-Farres; Sean F Brady
Journal:  J Am Chem Soc       Date:  2019-09-27       Impact factor: 15.419

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