Literature DB >> 28045625

Ki67 Proliferation Index as a Tool for Chemotherapy Decisions During and After Neoadjuvant Aromatase Inhibitor Treatment of Breast Cancer: Results From the American College of Surgeons Oncology Group Z1031 Trial (Alliance).

Matthew J Ellis1, Vera J Suman1, Jeremy Hoog1, Rodrigo Goncalves1, Souzan Sanati1, Chad J Creighton1, Katherine DeSchryver1, Erika Crouch1, Amy Brink1, Mark Watson1, Jingqin Luo1, Yu Tao1, Michael Barnes1, Mitchell Dowsett1, G Thomas Budd1, Eric Winer1, Paula Silverman1, Laura Esserman1, Lisa Carey1, Cynthia X Ma1, Gary Unzeitig1, Timothy Pluard1, Pat Whitworth1, Gildy Babiera1, J Michael Guenther1, Zoneddy Dayao1, David Ota1, Marilyn Leitch1, John A Olson1, D Craig Allred1, Kelly Hunt1.   

Abstract

Purpose To determine the pathologic complete response (pCR) rate in estrogen receptor (ER) -positive primary breast cancer triaged to chemotherapy when the protein encoded by the MKI67 gene (Ki67) level was > 10% after 2 to 4 weeks of neoadjuvant aromatase inhibitor (AI) therapy. A second objective was to examine risk of relapse using the Ki67-based Preoperative Endocrine Prognostic Index (PEPI). Methods The American College of Surgeons Oncology Group (ACOSOG) Z1031A trial enrolled postmenopausal women with stage II or III ER-positive (Allred score, 6 to 8) breast cancer whose treatment was randomly assigned to neoadjuvant AI therapy with anastrozole, exemestane, or letrozole. For the trial ACOSOG Z1031B, the protocol was amended to include a tumor Ki67 determination after 2 to 4 weeks of AI. If the Ki67 was > 10%, patients were switched to neoadjuvant chemotherapy. A pCR rate of > 20% was the predefined efficacy threshold. In patients who completed neoadjuvant AI, stratified Cox modeling was used to assess whether time to recurrence differed by PEPI = 0 score (T1 or T2, N0, Ki67 < 2.7%, ER Allred > 2) versus PEPI > 0 disease. Results Only two of the 35 patients in ACOSOG Z1031B who were switched to neoadjuvant chemotherapy experienced a pCR (5.7%; 95% CI, 0.7% to 19.1%). After 5.5 years of median follow-up, four (3.7%) of the 109 patients with a PEPI = 0 score relapsed versus 49 (14.4%) of 341 of patients with PEPI > 0 (recurrence hazard ratio [PEPI = 0 v PEPI > 0], 0.27; P = .014; 95% CI, 0.092 to 0.764). Conclusion Chemotherapy efficacy was lower than expected in ER-positive tumors exhibiting AI-resistant proliferation. The optimal therapy for these patients should be further investigated. For patients with PEPI = 0 disease, the relapse risk over 5 years was only 3.6% without chemotherapy, supporting the study of adjuvant endocrine monotherapy in this group. These Ki67 and PEPI triage approaches are being definitively studied in the ALTERNATE trial (Alternate Approaches for Clinical Stage II or III Estrogen Receptor Positive Breast Cancer Neoadjuvant Treatment in Postmenopausal Women: A Phase III Study; clinical trial information: NCT01953588).

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Year:  2017        PMID: 28045625      PMCID: PMC5455353          DOI: 10.1200/JCO.2016.69.4406

Source DB:  PubMed          Journal:  J Clin Oncol        ISSN: 0732-183X            Impact factor:   44.544


INTRODUCTION

For postmenopausal women with clinical stage II or III estrogen receptor (ER) –positive breast cancer, neoadjuvant aromatase inhibition (AI) is an underused and low-toxicity alternative to chemotherapy for increasing breast conservation rates.[1] A barrier to greater adoption of neoadjuvant AI is high response variability. We therefore postulated that an early switch from AI to neoadjuvant chemotherapy could produce better clinical outcomes for tumors that responded poorly to AI. Conversely, adjuvant AI alone may be sufficient to prevent relapse in tumors highly responsive to neoadjuvant AI. Pathologic complete response (pCR) after systemic chemotherapy remains a controversial clinical trial end point,[2,3] and alternatives are needed, particularly in ER-positive, human epidermal growth factor receptor 2–negative disease (HER2-negative), where pCR rates are low. Data from a neoadjuvant study comparing letrozole and tamoxifen in postmenopausal women with ER-positive breast cancer—P024 (Preoperative Treatment of Postmenopausal Breast Cancer Patients with Letrozole: A Randomized Double-Blind Multicenter Study)[4-6]—was previously used to generate the Preoperative Endocrine Prognostic Index (PEPI).[7] PEPI requires pathologic stage (tumor size and nodal status), in addition to levels of the protein encoded by the MKI67 gene (Ki67), and Allred ER score measured on the surgical specimen (with surgery conducted during uninterrupted endocrine therapy). Patients with a PEPI score of 0 (pT1 or pT2, pN0, Ki67 ≤ 2.7%, Allred score > 2) from the P024 trial were found to have a low risk of relapse. Similar findings were observed in the neoadjuvant IMPACT trial (Immediate Preoperative Anastrozole, Tamoxifen, or Combined with Tamoxifen)[2], but no subsequent validation efforts have been reported. The American College of Surgeons Oncology Group (ACOSOG) Z1031A randomized phase II clinical trial was designed to determine which AI (anastrozole, letrozole, or exemestane) should be recommended for future testing against chemotherapy in the neoadjuvant setting (ACOSOG is now a part of the Alliance for Clinical Trials in Oncology). The major initial finding from ACOSOG Z1031A was that half of the patients who were considered candidates for mastectomy or inoperable before neoadjuvant AI therapy had successful breast-conserving surgery.[8] When the enrollment in ACOSOG Z1031A was complete, an amendment was introduced (ACOSOG Z1031B) that triaged patients with tumors exhibiting a Ki67 > 10% in a tumor biopsy 2 to 4 weeks after starting AI to standard chemotherapy. The hypothesis being tested was that the pCR rate would be at least 20% in this AI-resistant population. Herein, we report the pCR results from ACOSOG Z1031B as well as the time to recurrence by PEPI status among all ACOSOG Z1031 patients who completed neoadjuvant AI treatment.

METHODS

Establishment of an Early Ki67 Cut Point for Triage to Chemotherapy

An on-treatment Ki67 threshold for switching from neoadjuvant AI therapy to neoadjuvant chemotherapy was established using data from the Preoperative Letrozole study (POL)[9] and the IMPACT trial.[10] A Ki67 value of > 10% at 1 month in the POL study was associated with a higher PEPI score (P = .01), a smaller number of patients in the PEPI-0 group (P = .08), and worse relapse-free survival (P = .0016). Similarly, the IMPACT data confirmed that a 2-week Ki67 > 10% predicted a higher PEPI score (P = .001), smaller numbers of patients in the PEPI-0 group (P = .004), and worse relapse-free survival (P = .008; Data Supplement; Appendix Table A1 and Figure A1A, online only). Combining these studies revealed only one PEPI-0 case among 51 patients with a 2- to 4-week Ki67 value of > 10%. Thus, according to the PEPI model, patients with a Ki67 value of 10% at 2 to 4 weeks had a < 2% chance of a favorable PEPI score that would allow them to safely avoid chemotherapy under current guidelines.
Table A1.

Early Ki67 Assessments and Outcome in IMPACT and POL Trials

Fig A1.

Relapse patterns in the two independent training sets used to justify the 10% early on treatment cut point for triage to chemotherapy in Z1031B. (A) is based on data from the IMPACT trial[10] and (B) from data derived from the Preoperative Letrozole (POL) Trial[9]. In both studies, on-treatment Ki67 values of >10% identified in a biopsy taken at 2 weeks (IMPACT) or 4 weeks (POL) are associated with a significantly higher risk of subsequent relapse over time than patients with values of ≤10% at the same time point.

Patient Eligibility

Eligible patients were postmenopausal with invasive breast cancer (clinical stage T2 to T4c, N0 to N3, M0). Additional criteria have been previously described.[8] This study was supported by the Clinical Trials Support Unit and approved by the institutional review boards of all participating institutions. Each participant signed an institutional review board–approved, protocol-specific informed consent in accordance with federal and institutional guidelines.

Treatment Schema

Patients enrolled in ACOSOG Z1031B underwent a core breast biopsy for Ki67 determination after 2 weeks of AI therapy. If the Ki67 was ≤ 10%, the patient continued AI therapy for another 12 to 14 weeks and then proceeded to surgery. Women whose 2-week Ki67 level was > 10% were offered either a National Comprehensive Cancer Network–approved neoadjuvant chemotherapy regimen or surgery at the discretion of their providers and/or the patients. If the biopsy core contained insufficient tumor to perform the Ki67 assay, patients could elect to undergo a repeat biopsy at 4 weeks or continue on AI therapy. If severe treatment-related toxicity was reported or the patient refused further AI therapy, surgery was recommended. Within 14 days of registration, patients underwent a complete physical examination with tumor assessment. Every 4 weeks, patients underwent a physical examination, toxicity assessment, and tumor assessment using February 2000 WHO criteria. If tumor progression was suspected, ultrasound or mammogram was required, and neoadjuvant AI was discontinued if progression was confirmed. Blood and biopsy specimens for correlative studies were collected at baseline, 2 to 4 weeks after the start of neoadjuvant AI treatment, on discontinuation of neoadjuvant treatment, and at surgery. For patients with PEPI = 0 disease, management without chemotherapy was recommended but not mandatory to determine the acceptability of this recommendation.

AI Treatment

Before the release of the ACOSOG Z1031A results,[8] eligible patients were randomly assigned to 16 to 18 weeks of neoadjuvant AI with exemestane 25 mg once daily, letrozole 2.5 mg once daily, or anastrozole 1 mg once daily. After the release of the data, patients could choose either letrozole or anastrozole treatment.

Statistical Considerations

The primary end point for ACOSOG Z1031B was the pCR rate among the women who after 2 weeks of neoadjuvant AI therapy had a tumor Ki67 level of > 10% and switched to neoadjuvant chemotherapy. pCR was defined as histologic evidence of no invasive tumor cells in the surgical breast specimen or ipsilateral lymph nodes. A one-stage phase II clinical trial design was chosen to assess the pCR rate. With a sample size of 35 and a one-sided α = 0.10, a one-sample binomial test of proportions would have a 90% chance of declaring success with a pCR rate of at least 20% compared with the null hypothesis that the pCR was 5% (at least four pCRs were needed to conclude pCR rate ≥ 20%). A 90% binomial confidence interval for the true pCR was also constructed. On the basis of the IMPACT study, it was estimated that 235 eligible women would need to enroll to obtain 35 women with a 2-week Ki67 > 10% willing to switch to neoadjuvant chemotherapy. The long-term PEPI outcome study cohort excluded women from both ACOSOG Z1031A and Z1031B who withdrew consent not having started neoadjuvant AI, had metastases or bilateral invasive breast cancer at registration, failed to undergo surgery, had alternative therapy before surgery, had radiographic confirmed disease progression or new primary disease during neoadjuvant AI, failed to have sentinel lymph node or axillary lymph node dissection, or lacked sufficient tissue to obtain a Ki67 or Allred score. In addition, ACOSOG Z1031B patients with 2- or 4-week Ki67 > 10% who remained on AI were excluded. Time to breast cancer recurrence (TBCR) was defined as the time from surgery to first local, regional, or distant disease recurrence. Patients without documented disease recurrence were censored at the date of their last disease evaluation. TBCR was estimated using the Kaplan-Meier method[11] Stratified Cox modeling (with cohort and adjuvant chemotherapy use as strata) was used to assess whether TBCR differed with respect to PEPI 0 status.[12] The Alliance Statistics and Data Center conducted data collection and statistical analyses. Data were locked on January 11, 2016.

Ki-67 CLIA Assay for ACOSOG Z1031A and Z1031B

For both ACOSOG Z1031 cohorts, a Ki67 clinical trial assay was performed at the College of American Pathologists– and the Clinical Laboratory Improvement Amendments–certified Washington University anatomic and molecular pathology laboratory using the CONFIRM anti-Ki67 (30-9) rabbit monoclonal primary antibody as a prediluted reagent on a Benchmark XT platform according to the manufacturer instructions (Ventana, Tucson, AZ). Tonsil was used as the assay positive control.

Ki-67 Quantification Approaches

A single experienced pathologist (D.C.A.) conducted the real-time Ki67 scoring for ACOSOG Z1031B. If the estimated rate was low (< 2.7%), or high (> 10%), a whole slide estimate was conducted. If the score was between 2.7% and 10%, point counting was conducted using an ocular grid, at least three high-power fields with a minimum of 100 cells scored. Retrospective analysis of ACOSOG Z1031A used the iScan Coreo scanner (Ventana) with the Companion Algorithm Ki-67 (30-9) software. The imaging approach required three to 10 areas of interest be selected at 4× magnification excluding ductal carcinoma in situ, vessels, and lymphocytes and avoiding perinecrotic or necrotic areas. The image analysis result was reviewed to ensure the software was correctly differentiating between benign and malignant cells, and, if not, the case was triaged to visual point counting. The visual point counting approach required color photomicrographs with a background grid taken at 40× of at least three fields selected based on invasive tumor content and the quality of the histology, not on Ki67 staining pattern, to obtain tumor cell count of at least 200. The scorer counted the total number of tumor cells and the number of Ki67-positive cells that intersected with first grid line and every third gridline thereafter.

Gene Expression Analysis to Study Cell Cycle–Regulated Genes

RNA preparation and Agilent 44K gene array analysis(Agilent Technologies, Santa Clara, CA) approaches were carried out as previously described.[2] The microarray contained probes for 720 of the 874 genes previously identified as having periodic expression in the cell division cycle of HeLa cells (Data Supplement).[13] Gene expression levels in each tumor were normalized to the number of standard deviations from the median expression value across all the tumors. A multigene proliferation score (MGPS) for a tumor was the average normalized expression of the 772 genes for that tumor analysis.[14] The microarray data sets have been submitted to Gene Expression Omnibus (GSE87411).

RESULTS

ACOSOG Z1031B Patient Cohort

From October 1, 2009 to November 15, 2011, 245 patients were enrolled into ACOSOG Z1031B. At week 2, 165 women (69.9%) had a Ki67 value of ≤ 10%; 49 women (20.8%) had a Ki67 value > 10%, and 22 women (9.3%) had insufficient tumor to make a Ki67 determination. Patient and disease characteristics of these 236 women are presented in Table 1 and the CONSORT diagram in Figure 1.
Table 1.

Patient and Disease Characteristics for the ACOSOG Z1031B Cohort Sorted by Early on-Treatment Ki67 Categories

Fig 1.

CONSORT diagram for the ACOSOG Z1031B patients. AI, aromatase inhibitor; Ki67, protein encoded by the MKI67 gene; NAC, neoadjuvant chemotherapy; NET, neoadjuvant endocrine therapy.

Patient and Disease Characteristics for the ACOSOG Z1031B Cohort Sorted by Early on-Treatment Ki67 Categories CONSORT diagram for the ACOSOG Z1031B patients. AI, aromatase inhibitor; Ki67, protein encoded by the MKI67 gene; NAC, neoadjuvant chemotherapy; NET, neoadjuvant endocrine therapy.

Neoadjuvant Chemotherapy Efficacy for ER-Positive Tumors Exhibiting a 2- to 4-Week Ki67 Value > 10% After Starting Aromatase Inhibition

Among the 49 patients whose week 2–Ki67 was > 10%, 35 patients switched to neoadjuvant chemotherapy; three patients continued with AI, eight patients went directly to surgery, two patients went to surgery after a rebiopsy at week 4 and again found their Ki67 to be > 10%; one patient pursued treatment outside of this study. Twenty-five (71.4%) of the 35 had an anthracycline-containing regimen (Table 2). Six patients (17.1%) failed to complete their planned course of chemotherapy because of intolerability. There were two (5.7%; 95% CI, 0.7% to 19.1%) pCRs among these 35 patients. A pCR occurred in a 55-year-old woman with cT2N0 ductal breast cancer with a 2-week Ki67 of 80.0% treated with doxorubicin and cyclophosphamide (AC) plus docetaxel. The second pCR was in a 59-year-old woman with cT3N1 ductal breast cancer with a 2-week Ki67 of 31.7% subsequently treated with docetaxel plus gemcitabine plus bevacizumab followed by AC plus bevacizumab.
Table 2.

Chemotherapy Approaches and Surgical Outcomes Among Patients With a Week 2 Ki67 of > 10% Who Switched to Neoadjuvant Chemotherapy

Chemotherapy Approaches and Surgical Outcomes Among Patients With a Week 2 Ki67 of > 10% Who Switched to Neoadjuvant Chemotherapy

Neoadjuvant Outcomes for ACOSOG Z1031B Patients Whose Week 2 to 4 Ki67 Was ≤ 10%

There were 187 patients whose 2-week Ki67 value was either ≤ 10% (165) or not determined because of insufficient tumor in the biopsy specimen (22). One of 187 patients whose week 2–Ki67 value was ≤ 10% chose to go directly to surgery rather than continue on AI. Of 22 patients whose 2-week Ki67 value was not obtained, all chose to remain on AI either after a rebiopsy at week 4 Ki67 of ≤ 10% (six patients) or after forgoing a rebiopsy at 4 weeks (16 patients; see Fig 1 for exact disposition of all patients). Among the remaining 177 patients, pathologic evaluation revealed no residual disease in the breast or lymph nodes in three patients, in only the breast in 92 patients, and in both the breast and lymph nodes in 82 patients (Table 3). The pCR rate among the 186 women who completed AI was therefore 1.6% (95% CI, 0.3% to 4.6%). PEPI scores were: 0 in 64 patients; 1 to 7 in 109 patients; and not determined in 13 patients because of progression during neoadjuvant AI therapy (two patients), lack of Allred score or Ki67 from surgical specimen (four patients), or failure to undergo surgery for reasons other than progression (seven patients). Thus, the PEPI-0 rate was 34.4% (95% CI, 27.6% to 41.7%).
Table 3.

Outcomes Among Patients With Week 2 Ki67 of ≤ 10% or Not Determined Who Continued on Neoadjuvant Aromatase Inhibitor

Outcomes Among Patients With Week 2 Ki67 of ≤ 10% or Not Determined Who Continued on Neoadjuvant Aromatase Inhibitor

Adjuvant Chemotherapy Decisions for Patients With a PEPI = 0

Management without adjuvant chemotherapy was the preferred protocol approach for patients in the PEPI = 0 category. This occurred in 57 of 64 PEPI = 0 patients (89%). In contrast, 45 (41.2%) of 109 patients with a PEPI > 0 received adjuvant chemotherapy.

Long-Term Outcomes for ACOSOG Z1031 Patients According to PEPI Status

Clinical outcomes after surgery were examined in 287 ACOSOG Z1031A patients and 173 ACOSOG Z1031B patients who completed neoadjuvant AI (REMARK, Fig 2). Overall, 119 (25.9%) tumors were categorized as PEPI = 0. Adjuvant chemotherapy was administered in 18 (15.1%) of 119 PEPI = 0 cases and 162 (47.5%) of 341 PEPI > 0 patients. Adjuvant radiation was administered in 80 (67.2%) of 119 PEPI = 0 cases and 242 (71.0%) of 341 PEPI > 0 cases. At data lock, all patients have been followed until death or a median of 5.5 years postsurgery, with 365 patients alive without a disease progression, 21 alive with disease recurrence, 32 dead after disease recurrences, and 42 patients dead as a result of a second cancer (six patients), noncancer causes (28 patients), or unknown causes (eight patients). A total of 49 patients with PEPI > 0 disease experienced recurrence: local (seven), regional (two), distant (39), and locoregional/distant (one); and four patients with PEPI = 0 disease experienced recurrence (all distant). The hazard of breast cancer recurrence for PEPI = 0 cases relative to the PEPI > 0 cases was 0.27 (P = .014; 95% CI, 0.092 to 0.764) when stratifying by cohort and known adjuvant chemotherapy use. Kaplan-Meier plots of the time to breast cancer recurrence by PEPI = 0 versus PEPI > 0 status are presented in Figure 3A for the combined cohort and in Figure 3B for those patients who did not receive adjuvant chemotherapy. Because the Ki67 assay approach in ACOSOG Z1031A is being tested prospectively in the ALTERNATE (Alternate Approaches for Clinical Stage II or III Estrogen Receptor Positive Breast Cancer Neoadjuvant Treatment in Postmenopausal Women: A Phase III Study) trial, the PEPI-0 outcome for the ACOSOG Z1031A cohort is shown separately (Fig 3C).
Fig 2.

REMARK diagrams for the long-term outcome analysis by Preoperative Endocrine Therapy Prognostic Index (PEPI) score for (A) ACOSOG Z1031A patients, and (B) ACOSOG Z1031B patients. AI, aromatase inhibitor; Ki67, protein encoded by the MKI67 gene; NET, neoadjuvant endocrine therapy.

Fig 3.

Kaplan-Meier analysis by Preoperative Endocrine Prognostic Index (PEPI) = 0 (pathologic stage II or IIA, surgical specimen protein encoded by the MKI67 gene (Ki67) < 2.7%, and estrogen receptor Allred score > 2) versus PEPI > 0 (A) for all patients, (B) for patients who did not receive adjuvant chemotherapy, and (C) for patients in the ACOSOG Z1031A cohort alone. (D) Outcomes for patients according to the 10% Ki67 cut point on ACOSOG Z1031B.

REMARK diagrams for the long-term outcome analysis by Preoperative Endocrine Therapy Prognostic Index (PEPI) score for (A) ACOSOG Z1031A patients, and (B) ACOSOG Z1031B patients. AI, aromatase inhibitor; Ki67, protein encoded by the MKI67 gene; NET, neoadjuvant endocrine therapy. Kaplan-Meier analysis by Preoperative Endocrine Prognostic Index (PEPI) = 0 (pathologic stage II or IIA, surgical specimen protein encoded by the MKI67 gene (Ki67) < 2.7%, and estrogen receptor Allred score > 2) versus PEPI > 0 (A) for all patients, (B) for patients who did not receive adjuvant chemotherapy, and (C) for patients in the ACOSOG Z1031A cohort alone. (D) Outcomes for patients according to the 10% Ki67 cut point on ACOSOG Z1031B.

Prognosis for ACOSOG Z1031B Patients According to Ki67 at 2 to 4 Weeks

The 35 patients who were triaged to chemotherapy have been followed at least 1 year postsurgery or to death. At the time of the data lock, there were 24 patients alive without a disease progression, six were alive with disease progression, two had died of breast cancer, and three had died as a result of noncancer causes. With a median follow-up of 4.4 years post registration, the risk of relapse was increased for those with 2- to 4-week Ki67 > 10% (log rank P = .004; Fig 3D).

Gene Expression Analysis and Treatment-Induced Tumor Proliferation Status

The low pCR rate to chemotherapy in ACOSOG Z1031B prompted a further investigation of tumor proliferation status. Paired high tumor content frozen tumor samples before and after 2 or 4 weeks of AI were available in 109 of the 245 patients and were used for mRNA expression profiling (REMARK, Fig 4A). Proliferation status was determined using a noncommercial MGPS.[14] Pairwise analysis demonstrated mRNA levels for ER, progesterone receptor, and Ki67, and MGPS values were markedly suppressed with treatment (Wilcoxon signed rank P > .001). Box plots comparing the MGPS scores at baseline and 2 weeks are illustrated in Figure 4C. The MGPS scores were higher at both baseline and after 2 weeks in the cohort, with 2-week Ki67 values of > 10% compared with ≤ 10% (Fig 4C; P < .001). The Spearman correlation coefficient at 2 to 4 weeks between Ki67 values and the MGPS was 0.49 (Fig 4D).
Fig 4.

Gene expression–based analysis of proliferation in 109 patients at baseline and 2-week paired samples (including a small number of patients for whom the data were derived from a 4-week sample) from the ACOSOG Z1031B cohort only (A) REMARK diagram. (B) The effect of aromatase inhibitor (AI) treatment on mRNA levels for estrogen receptor, progesterone receptor, and protein encoded by the MKI67 gene (Ki67) as a heat map showing marked suppression with treatment. The gray and black bars indicate samples associated with Ki67 values above or below 10% and patients who received chemotherapy. The red bar indicates the one patient in this analysis who experienced a pathologic complete response (pCR) to chemotherapy. The lowest bar provides a heat map from the multigene proliferation score (MGPS, cell cycle), also showing marked suppression of treatment, but also identifying patients who have presently high levels of gene expression from cell cycle–related genes that overlap with patients with Ki67 levels of > 10% and received chemotherapy. (C) Box plots comparing the MGPS scores at baseline and 2 weeks in samples associated with 2-week Ki67 < 10% or > 10% showing higher scores at both baseline and at 2 weeks for patients with Ki67 scores > 10% (Wilcoxon signed rank test P ≤ .001 for both comparisons). (D) Correlation between Ki67 values and MGPS values at 2 weeks with the Pearson’s correlation coefficient. MGPS, multigene proliferation; NAC, neoadjuvant chemotherapy.

Gene expression–based analysis of proliferation in 109 patients at baseline and 2-week paired samples (including a small number of patients for whom the data were derived from a 4-week sample) from the ACOSOG Z1031B cohort only (A) REMARK diagram. (B) The effect of aromatase inhibitor (AI) treatment on mRNA levels for estrogen receptor, progesterone receptor, and protein encoded by the MKI67 gene (Ki67) as a heat map showing marked suppression with treatment. The gray and black bars indicate samples associated with Ki67 values above or below 10% and patients who received chemotherapy. The red bar indicates the one patient in this analysis who experienced a pathologic complete response (pCR) to chemotherapy. The lowest bar provides a heat map from the multigene proliferation score (MGPS, cell cycle), also showing marked suppression of treatment, but also identifying patients who have presently high levels of gene expression from cell cycle–related genes that overlap with patients with Ki67 levels of > 10% and received chemotherapy. (C) Box plots comparing the MGPS scores at baseline and 2 weeks in samples associated with 2-week Ki67 < 10% or > 10% showing higher scores at both baseline and at 2 weeks for patients with Ki67 scores > 10% (Wilcoxon signed rank test P ≤ .001 for both comparisons). (D) Correlation between Ki67 values and MGPS values at 2 weeks with the Pearson’s correlation coefficient. MGPS, multigene proliferation; NAC, neoadjuvant chemotherapy.

DISCUSSION

The PEPI is a distinct prognostic approach for ER-positive breast cancer that depends on tumor features after neoadjuvant endocrine therapy. PEPI integrates residual disease burden and the cell cycle (Ki67) response providing a simple approach to deescalating adjuvant treatment after neoadjuvant AI for patients in the PEPI = 0 category. These patients, who had a risk of relapse of 3% with a median follow-up of approximately 5 years, are therefore unlikely to benefit from adjuvant chemotherapy. A weakness of the study is that the relapse risk estimate is based on only 119 cases; thus, PEPI validation efforts should continue. Concerns regarding the variability in Ki67 analysis have been discussed extensively.[15] The imaging analysis approach to Ki67 estimation used for the ACOSOG Z1031A cohort is promising (Fig 3C), but conclusive data using this methodology await the results of the ALTERNATE trial. The low pCR rate for ACOSOG Z1031B patients who switched to neoadjuvant chemotherapy contradicts the hypothesis that AI-resistant proliferation in ER-rich tumors is associated with enhanced chemotherapy response. The muted chemotherapy response was unlikely because of the Ki67 assay failure to capture highly proliferative tumors, because an independent examination of tumor cell cycle activity with a multigene proliferation score indicated significantly higher expression of cell cycle–dependent genes when the Ki67 was > 10% at 2 to 4 weeks (Figs 4C and 4D). Low chemotherapy responsiveness could reflect the postmenopausal status of the patient cohort,[16] the high ER content of tumors eligible for neoadjuvant endocrine therapy,[17,18] or the use of endocrine therapy before neoadjuvant chemotherapy. However, the latter hypothesis seems unlikely because, unlike prior studies that raised this concern,[19] endocrine therapy was not administered concurrently with chemotherapy. Our data provide further support for an assessment of prognosis in ER-positive breast cancer on the basis of post–neoadjuvant endocrine therapy tumor characteristics. Triaging patients to neoadjuvant chemotherapy on the basis of failure to suppress Ki67 is feasible but highlights the relative chemotherapy-resistant nature of strongly ER-positive yet AI-resistant disease in postmenopausal women and the early relapse risk faced by patients in this category in all three studies where this question can be examined (Fig 3D; Data Supplement). The development of new treatment options for intrinsically AI-resistant disease will likely depend on new insights into the molecular basis for primary endocrine therapy resistance.[20,21]
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1.  Preoperative treatment of postmenopausal breast cancer patients with letrozole: A randomized double-blind multicenter study.

Authors:  W Eiermann; S Paepke; J Appfelstaedt; A Llombart-Cussac; J Eremin; J Vinholes; L Mauriac; M Ellis; M Lassus; H A Chaudri-Ross; M Dugan; M Borgs
Journal:  Ann Oncol       Date:  2001-11       Impact factor: 32.976

2.  Letrozole is more effective neoadjuvant endocrine therapy than tamoxifen for ErbB-1- and/or ErbB-2-positive, estrogen receptor-positive primary breast cancer: evidence from a phase III randomized trial.

Authors:  M J Ellis; A Coop; B Singh; L Mauriac; A Llombert-Cussac; F Jänicke; W R Miller; D B Evans; M Dugan; C Brady; E Quebe-Fehling; M Borgs
Journal:  J Clin Oncol       Date:  2001-09-15       Impact factor: 44.544

3.  Outcome after neoadjuvant chemotherapy in young breast cancer patients: a pooled analysis of individual patient data from eight prospectively randomized controlled trials.

Authors:  Sibylle Loibl; Christian Jackisch; Bianca Lederer; Michael Untch; Stefan Paepke; Sherko Kümmel; Andreas Schneeweiss; Jens Huober; Jörn Hilfrich; Claus Hanusch; Bernd Gerber; Holger Eidtmann; Carsten Denkert; Serban Dan Costa; Jens-Uwe Blohmer; Valentina Nekljudova; Keyur Mehta; Gunter von Minckwitz
Journal:  Breast Cancer Res Treat       Date:  2015-06-25       Impact factor: 4.872

4.  Effect of neoadjuvant anthracycline-taxane-based chemotherapy in different biological breast cancer phenotypes: overall results from the GeparTrio study.

Authors:  Jens Huober; Gunter von Minckwitz; Carsten Denkert; Hans Tesch; Erich Weiss; Dirk Michael Zahm; Antje Belau; Fariba Khandan; Maik Hauschild; Christoph Thomssen; Bernhard Högel; Silvia Darb-Esfahani; Keyur Mehta; Sibylle Loibl
Journal:  Breast Cancer Res Treat       Date:  2010-08-10       Impact factor: 4.872

Review 5.  Pathological complete response and long-term clinical benefit in breast cancer: the CTNeoBC pooled analysis.

Authors:  Patricia Cortazar; Lijun Zhang; Michael Untch; Keyur Mehta; Joseph P Costantino; Norman Wolmark; Hervé Bonnefoi; David Cameron; Luca Gianni; Pinuccia Valagussa; Sandra M Swain; Tatiana Prowell; Sibylle Loibl; D Lawrence Wickerham; Jan Bogaerts; Jose Baselga; Charles Perou; Gideon Blumenthal; Jens Blohmer; Eleftherios P Mamounas; Jonas Bergh; Vladimir Semiglazov; Robert Justice; Holger Eidtmann; Soonmyung Paik; Martine Piccart; Rajeshwari Sridhara; Peter A Fasching; Leen Slaets; Shenghui Tang; Bernd Gerber; Charles E Geyer; Richard Pazdur; Nina Ditsch; Priya Rastogi; Wolfgang Eiermann; Gunter von Minckwitz
Journal:  Lancet       Date:  2014-02-14       Impact factor: 79.321

6.  Adjuvant chemotherapy and timing of tamoxifen in postmenopausal patients with endocrine-responsive, node-positive breast cancer: a phase 3, open-label, randomised controlled trial.

Authors:  Kathy S Albain; William E Barlow; Peter M Ravdin; William B Farrar; Gary V Burton; Steven J Ketchel; Charles D Cobau; Ellis G Levine; James N Ingle; Kathleen I Pritchard; Allen S Lichter; Daniel J Schneider; Martin D Abeloff; I Craig Henderson; Hyman B Muss; Stephanie J Green; Danika Lew; Robert B Livingston; Silvana Martino; C Kent Osborne
Journal:  Lancet       Date:  2009-12-10       Impact factor: 79.321

7.  Treatment of lymph-node-negative, oestrogen-receptor-positive breast cancer: long-term findings from National Surgical Adjuvant Breast and Bowel Project randomised clinical trials.

Authors:  Bernard Fisher; Jong-Hyeon Jeong; John Bryant; Stewart Anderson; James Dignam; Edwin R Fisher; Norman Wolmark
Journal:  Lancet       Date:  2004 Sep 4-10       Impact factor: 79.321

8.  Improved surgical outcomes for breast cancer patients receiving neoadjuvant aromatase inhibitor therapy: results from a multicenter phase II trial.

Authors:  John A Olson; G Thomas Budd; Lisa A Carey; Lyndsay A Harris; Laura J Esserman; Gini F Fleming; Paul K Marcom; George S Leight; Therese Giuntoli; Paul Commean; Kyongtae Bae; Jingqin Luo; Matthew J Ellis
Journal:  J Am Coll Surg       Date:  2009-05       Impact factor: 6.113

9.  Assessment of Ki67 in breast cancer: recommendations from the International Ki67 in Breast Cancer working group.

Authors:  Mitch Dowsett; Torsten O Nielsen; Roger A'Hern; John Bartlett; R Charles Coombes; Jack Cuzick; Matthew Ellis; N Lynn Henry; Judith C Hugh; Tracy Lively; Lisa McShane; Soon Paik; Frederique Penault-Llorca; Ljudmila Prudkin; Meredith Regan; Janine Salter; Christos Sotiriou; Ian E Smith; Giuseppe Viale; Jo Anne Zujewski; Daniel F Hayes
Journal:  J Natl Cancer Inst       Date:  2011-09-29       Impact factor: 13.506

10.  Whole-genome analysis informs breast cancer response to aromatase inhibition.

Authors:  Matthew J Ellis; Li Ding; Dong Shen; Jingqin Luo; Vera J Suman; John W Wallis; Brian A Van Tine; Jeremy Hoog; Reece J Goiffon; Theodore C Goldstein; Sam Ng; Li Lin; Robert Crowder; Jacqueline Snider; Karla Ballman; Jason Weber; Ken Chen; Daniel C Koboldt; Cyriac Kandoth; William S Schierding; Joshua F McMichael; Christopher A Miller; Charles Lu; Christopher C Harris; Michael D McLellan; Michael C Wendl; Katherine DeSchryver; D Craig Allred; Laura Esserman; Gary Unzeitig; Julie Margenthaler; G V Babiera; P Kelly Marcom; J M Guenther; Marilyn Leitch; Kelly Hunt; John Olson; Yu Tao; Christopher A Maher; Lucinda L Fulton; Robert S Fulton; Michelle Harrison; Ben Oberkfell; Feiyu Du; Ryan Demeter; Tammi L Vickery; Adnan Elhammali; Helen Piwnica-Worms; Sandra McDonald; Mark Watson; David J Dooling; David Ota; Li-Wei Chang; Ron Bose; Timothy J Ley; David Piwnica-Worms; Joshua M Stuart; Richard K Wilson; Elaine R Mardis
Journal:  Nature       Date:  2012-06-10       Impact factor: 49.962

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  93 in total

Review 1.  Neoadjuvant endocrine therapy: A potential strategy for ER-positive breast cancer.

Authors:  Li-Tong Yao; Mo-Zhi Wang; Meng-Shen Wang; Xue-Ting Yu; Jing-Yi Guo; Tie Sun; Xin-Yan Li; Ying-Ying Xu
Journal:  World J Clin Cases       Date:  2019-08-06       Impact factor: 1.337

2.  Comprehensive Profiling of DNA Repair Defects in Breast Cancer Identifies a Novel Class of Endocrine Therapy Resistance Drivers.

Authors:  Meenakshi Anurag; Nindo Punturi; Jeremy Hoog; Matthew N Bainbridge; Matthew J Ellis; Svasti Haricharan
Journal:  Clin Cancer Res       Date:  2018-05-23       Impact factor: 12.531

3.  Loss of MutL Disrupts CHK2-Dependent Cell-Cycle Control through CDK4/6 to Promote Intrinsic Endocrine Therapy Resistance in Primary Breast Cancer.

Authors:  Svasti Haricharan; Nindo Punturi; Purba Singh; Kimberly R Holloway; Meenakshi Anurag; Jacob Schmelz; Cheryl Schmidt; Jonathan T Lei; Vera Suman; Kelly Hunt; John A Olson; Jeremy Hoog; Shunqiang Li; Shixia Huang; Dean P Edwards; Shyam M Kavuri; Matthew N Bainbridge; Cynthia X Ma; Matthew J Ellis
Journal:  Cancer Discov       Date:  2017-08-11       Impact factor: 39.397

4.  Lessons in precision oncology from neoadjuvant endocrine therapy trials in ER+ breast cancer.

Authors:  Matthew J Ellis
Journal:  Breast       Date:  2017-06-30       Impact factor: 4.380

Review 5.  Protein biomarkers for subtyping breast cancer and implications for future research.

Authors:  Claudius Mueller; Amanda Haymond; Justin B Davis; Alexa Williams; Virginia Espina
Journal:  Expert Rev Proteomics       Date:  2018-01-03       Impact factor: 3.940

6.  Potent Cell-Cycle Inhibition and Upregulation of Immune Response with Abemaciclib and Anastrozole in neoMONARCH, Phase II Neoadjuvant Study in HR+/HER2- Breast Cancer.

Authors:  Sara A Hurvitz; Miguel Martin; Michael F Press; David Chan; María Fernandez-Abad; Edgar Petru; Regan Rostorfer; Valentina Guarneri; Chiun-Sheng Huang; Susana Barriga; Sameera Wijayawardana; Manisha Brahmachary; Philip J Ebert; Anwar Hossain; Jiangang Liu; Adam Abel; Amit Aggarwal; Valerie M Jansen; Dennis J Slamon
Journal:  Clin Cancer Res       Date:  2019-10-15       Impact factor: 12.531

7.  Cytoplasmic Cyclin E Mediates Resistance to Aromatase Inhibitors in Breast Cancer.

Authors:  Iman Doostan; Cansu Karakas; Mehrnoosh Kohansal; Kwang-Hui Low; Matthew J Ellis; John A Olson; Vera J Suman; Kelly K Hunt; Stacy L Moulder; Khandan Keyomarsi
Journal:  Clin Cancer Res       Date:  2017-09-25       Impact factor: 12.531

8.  NeoPalAna: Neoadjuvant Palbociclib, a Cyclin-Dependent Kinase 4/6 Inhibitor, and Anastrozole for Clinical Stage 2 or 3 Estrogen Receptor-Positive Breast Cancer.

Authors:  Cynthia X Ma; Feng Gao; Jingqin Luo; Donald W Northfelt; Matthew Goetz; Andres Forero; Jeremy Hoog; Michael Naughton; Foluso Ademuyiwa; Rama Suresh; Karen S Anderson; Julie Margenthaler; Rebecca Aft; Timothy Hobday; Timothy Moynihan; William Gillanders; Amy Cyr; Timothy J Eberlein; Tina Hieken; Helen Krontiras; Zhanfang Guo; Michelle V Lee; Nicholas C Spies; Zachary L Skidmore; Obi L Griffith; Malachi Griffith; Shana Thomas; Caroline Bumb; Kiran Vij; Cynthia Huang Bartlett; Maria Koehler; Hussam Al-Kateb; Souzan Sanati; Matthew J Ellis
Journal:  Clin Cancer Res       Date:  2017-03-07       Impact factor: 12.531

9.  Standard Pathologic Features Can Be Used to Identify a Subset of Estrogen Receptor-Positive, HER2 Negative Patients Likely to Benefit from Neoadjuvant Chemotherapy.

Authors:  Oriana A Petruolo; Melissa Pilewskie; Sujata Patil; Andrea V Barrio; Michelle Stempel; Hannah Y Wen; Monica Morrow
Journal:  Ann Surg Oncol       Date:  2017-05-30       Impact factor: 5.344

10.  Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.

Authors:  Karsten Krug; Eric J Jaehnig; Shankha Satpathy; Lili Blumenberg; Alla Karpova; Meenakshi Anurag; George Miles; Philipp Mertins; Yifat Geffen; Lauren C Tang; David I Heiman; Song Cao; Yosef E Maruvka; Jonathan T Lei; Chen Huang; Ramani B Kothadia; Antonio Colaprico; Chet Birger; Jarey Wang; Yongchao Dou; Bo Wen; Zhiao Shi; Yuxing Liao; Maciej Wiznerowicz; Matthew A Wyczalkowski; Xi Steven Chen; Jacob J Kennedy; Amanda G Paulovich; Mathangi Thiagarajan; Christopher R Kinsinger; Tara Hiltke; Emily S Boja; Mehdi Mesri; Ana I Robles; Henry Rodriguez; Thomas F Westbrook; Li Ding; Gad Getz; Karl R Clauser; David Fenyö; Kelly V Ruggles; Bing Zhang; D R Mani; Steven A Carr; Matthew J Ellis; Michael A Gillette
Journal:  Cell       Date:  2020-11-18       Impact factor: 41.582

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