Literature DB >> 28045100

Ground rules of the pluripotency gene regulatory network.

Mo Li1,2,3, Juan Carlos Izpisua Belmonte1.   

Abstract

Pluripotency is a state that exists transiently in the early embryo and, remarkably, can be recapitulated in vitro by deriving embryonic stem cells or by reprogramming somatic cells to become induced pluripotent stem cells. The state of pluripotency, which is stabilized by an interconnected network of pluripotency-associated genes, integrates external signals and exerts control over the decision between self-renewal and differentiation at the transcriptional, post-transcriptional and epigenetic levels. Recent evidence of alternative pluripotency states indicates the regulatory flexibility of this network. Insights into the underlying principles of the pluripotency network may provide unprecedented opportunities for studying development and for regenerative medicine.

Mesh:

Year:  2017        PMID: 28045100     DOI: 10.1038/nrg.2016.156

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  130 in total

Review 1.  MicroRNAs in embryonic stem cell function and fate.

Authors:  Gustavo Tiscornia; Juan Carlos Izpisúa Belmonte
Journal:  Genes Dev       Date:  2010-12-15       Impact factor: 11.361

2.  Core transcriptional regulatory circuitry in human embryonic stem cells.

Authors:  Laurie A Boyer; Tong Ihn Lee; Megan F Cole; Sarah E Johnstone; Stuart S Levine; Jacob P Zucker; Matthew G Guenther; Roshan M Kumar; Heather L Murray; Richard G Jenner; David K Gifford; Douglas A Melton; Rudolf Jaenisch; Richard A Young
Journal:  Cell       Date:  2005-09-23       Impact factor: 41.582

3.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

4.  Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal.

Authors:  Yue Wang; Zhenyu Xu; Junfeng Jiang; Chen Xu; Jiuhong Kang; Lei Xiao; Minjuan Wu; Jun Xiong; Xiaocan Guo; Houqi Liu
Journal:  Dev Cell       Date:  2013-03-28       Impact factor: 12.270

5.  Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.

Authors:  Jichang Wang; Gangcai Xie; Manvendra Singh; Avazeh T Ghanbarian; Tamás Raskó; Attila Szvetnik; Huiqiang Cai; Daniel Besser; Alessandro Prigione; Nina V Fuchs; Gerald G Schumann; Wei Chen; Matthew C Lorincz; Zoltán Ivics; Laurence D Hurst; Zsuzsanna Izsvák
Journal:  Nature       Date:  2014-10-15       Impact factor: 49.962

6.  Klf2 is an essential factor that sustains ground state pluripotency.

Authors:  Jia-Chi Yeo; Jianming Jiang; Zi-Ying Tan; Guo-Rong Yim; Jia-Hui Ng; Jonathan Göke; Petra Kraus; Hongqing Liang; Kevin Andrew Uy Gonzales; Han-Chung Chong; Cheng-Peow Tan; Yee-Siang Lim; Nguan-Soon Tan; Thomas Lufkin; Huck-Hui Ng
Journal:  Cell Stem Cell       Date:  2014-06-05       Impact factor: 24.633

7.  Systems Analyses Reveal Shared and Diverse Attributes of Oct4 Regulation in Pluripotent Cells.

Authors:  Li Ding; Maciej Paszkowski-Rogacz; Maria Winzi; Debojyoti Chakraborty; Mirko Theis; Sukhdeep Singh; Giovanni Ciotta; Ina Poser; Assen Roguev; Wai Kit Chu; Chunaram Choudhary; Matthias Mann; A Francis Stewart; Nevan Krogan; Frank Buchholz
Journal:  Cell Syst       Date:  2015-08-26       Impact factor: 10.304

Review 8.  Systems biology of stem cell fate and cellular reprogramming.

Authors:  Ben D Macarthur; Avi Ma'ayan; Ihor R Lemischka
Journal:  Nat Rev Mol Cell Biol       Date:  2009-09-09       Impact factor: 94.444

9.  Derivation of completely cell culture-derived mice from early-passage embryonic stem cells.

Authors:  A Nagy; J Rossant; R Nagy; W Abramow-Newerly; J C Roder
Journal:  Proc Natl Acad Sci U S A       Date:  1993-09-15       Impact factor: 11.205

10.  TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.

Authors:  Helen M Rowe; Adamandia Kapopoulou; Andrea Corsinotti; Liana Fasching; Todd S Macfarlan; Yara Tarabay; Stéphane Viville; Johan Jakobsson; Samuel L Pfaff; Didier Trono
Journal:  Genome Res       Date:  2012-12-10       Impact factor: 9.043

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  42 in total

1.  Ronin influences the DNA damage response in pluripotent stem cells.

Authors:  Bryce A Seifert; Marion Dejosez; Thomas P Zwaka
Journal:  Stem Cell Res       Date:  2017-07-03       Impact factor: 2.020

Review 2.  The interplay of epigenetic marks during stem cell differentiation and development.

Authors:  Yaser Atlasi; Hendrik G Stunnenberg
Journal:  Nat Rev Genet       Date:  2017-08-14       Impact factor: 53.242

3.  Accurate annotation of accessible chromatin in mouse and human primordial germ cells.

Authors:  Jingyi Li; Shijun Shen; Jiayu Chen; Wenqiang Liu; Xiaocui Li; Qianshu Zhu; Beiying Wang; Xiaolong Chen; Li Wu; Mingzhu Wang; Liang Gu; Hong Wang; Jiqing Yin; Cizhong Jiang; Shaorong Gao
Journal:  Cell Res       Date:  2018-10-10       Impact factor: 25.617

4.  Pluripotency gene network dynamics: System views from parametric analysis.

Authors:  Ilya R Akberdin; Nadezda A Omelyanchuk; Stanislav I Fadeev; Natalya E Leskova; Evgeniya A Oschepkova; Fedor V Kazantsev; Yury G Matushkin; Dmitry A Afonnikov; Nikolay A Kolchanov
Journal:  PLoS One       Date:  2018-03-29       Impact factor: 3.240

5.  Autophagy mediates temporary reprogramming and dedifferentiation in plant somatic cells.

Authors:  Eleazar Rodriguez; Jonathan Chevalier; Jakob Olsen; Jeppe Ansbøl; Vaitsa Kapousidou; Zhangli Zuo; Steingrim Svenning; Christian Loefke; Stefanie Koemeda; Pedro Serrano Drozdowskyj; Jakub Jez; Gerhard Durnberger; Fabian Kuenzl; Michael Schutzbier; Karl Mechtler; Elise Nagel Ebstrup; Signe Lolle; Yasin Dagdas; Morten Petersen
Journal:  EMBO J       Date:  2020-01-13       Impact factor: 11.598

6.  Evidence of Extracellular Vesicles Biogenesis and Release in Mouse Embryonic Stem Cells.

Authors:  Lilian Cruz; Jenny Andrea Arevalo Romero; Mariana Brandão Prado; Tiago G Santos; Marilene Hohmuth Lopes
Journal:  Stem Cell Rev Rep       Date:  2018-04       Impact factor: 5.739

Review 7.  Nanog Expression in Embryonic Stem Cells - An Ideal Model System to Dissect Enhancer Function.

Authors:  Steven Blinka; Sridhar Rao
Journal:  Bioessays       Date:  2017-10-04       Impact factor: 4.345

8.  Systems-Wide Approaches in Induced Pluripotent Stem Cell Models.

Authors:  Edward Lau; David T Paik; Joseph C Wu
Journal:  Annu Rev Pathol       Date:  2018-10-31       Impact factor: 23.472

9.  Identification of a dynamic gene regulatory network required for pluripotency factor-induced reprogramming of mouse fibroblasts and hepatocytes.

Authors:  Maria Papathanasiou; Stefanos A Tsiftsoglou; Alexander P Polyzos; Deppie Papadopoulou; Dimitrios Valakos; Eleftheria Klagkou; Panagiota Karagianni; Maria Pliatska; Iannis Talianidis; Marios Agelopoulos; Dimitris Thanos
Journal:  EMBO J       Date:  2020-10-09       Impact factor: 11.598

10.  A mathematical model exhibiting the effect of DNA methylation on the stability boundary in cell-fate networks.

Authors:  Tianchi Chen; M Ali Al-Radhawi; Eduardo D Sontag
Journal:  Epigenetics       Date:  2020-09-22       Impact factor: 4.528

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