Chromatin Remodeling Factor LSH is Upregulated by the LRP6-GSK3β-E2F1 Axis Linking Reversely with Survival in Gliomas.

The signaling pathway-based stratification in chromatin modification could predict clinical outcome more reliably than morphology-alone-based classification schemes in gliomas. Here we reported a role of the chromatin-remodeling factor lymphoid-specific helicase (LSH) in gliomas. Among astrocytomas of grade I to III and glioblastoma of grade IV, LSH were almost completely expressed in all cases, and strongly correlated with astrocytomas progression and poor prognosis of patients with astrocytomas and glioblastoma. Ectopic expression of LSH promoted tumor formation. Up-regulation of transcription factor E2F1 in astrocytomas and glioblastoma was associated with the progression of gliomas and correlated with LSH expression. Chromatin immunoprecipitation (ChIP) analysis showed transcription factor E2F1 were recruited to the promoter region of LSH, and depletion of E2F1 decreased LSH expression and cell growth. Moreover, glycogen synthase kinase-3β (GSK-3β), an intact complex of E2F1, were also highly expressed in astrocytomas and linked with astrocytomas progression and poor prognosis of patients with astrocytomas and glioblastoma. Inhibition of GSK3β increased the enrichment of E2F1 to the LSH promoter, in turn, increased LSH expression. Lipoprotein receptor-related protein 6 (LRP6), an upstream regulator of GSK3β signaling pathway, was highly expressed in gliomas. Knockdown of LRP6 decreased LSH expression through decrease of recruitment of E2F1 to the LSH promoter leading to inhibition of cell growth. Taken together, this study reveals evidence demonstrating a mechanism by which upregulated promoted gliomas. A mechanistic link between LSH expression and activation of the LPR6/ GSK3β/E2F1 axis in gliomas illustrates a novel role of LSH in malignant astrocytomas and glioblastoma.

Introduction

Gliomas is the most frequently occurring and devastating human brain malignancy, which represent approximately 30% of all central nervous system tumors and 80% of malignant brain tumors 1, 2. Despite technological advances in neuroimaging, surgery and adjuvant treatments including phototherapy, radiation and concomitant temozolomide, the prognosis for patients with gliomas remains dismal 2, 3. Individuals receiving the current standard treatment for high grade gliomas, consisting of surgery, fractionated radiotherapy and concomitant chemotherapy with the DNA alkylating drug temozolomide, show a median survival of only 14.6 months with just 26.5% of individuals surviving for 2 years 4-6. Gliomas are primary brain tumors that are thought to derive from neuroglial stem or progenitor cells. On the basis of their histological appearance, they have been traditionally classified as astrocytic, oligodendroglial or ependymal tumors and assigned WHO grades I-IV, which indicate different degrees of malignancy. Tremendous progress in genomic, transcriptomic and epigenetic profiling has resulted in new concepts of classifying and treating gliomas 7. Recent reports indicate that molecular-based stratification in chromatin modification could predict clinical outcome more reliably than morphology-alone-based classification schemes in gliomas 7-11. For this reason, it is vital to identify the molecular chromatin mediators and signaling pathways that drive gliomas progression for the development of targeted therapeutics to improve the overall survival of gliomas patients.

The SWI/SNF (mating type switching/sucrose non-fermenting) complex is an evolutionarily conserved multiunit complex of factors that utilize the energy of ATP hydrolysis to remodel nucleosomes and thereby affect gene expression 12. LSH (lymphoid-specific helicase), also called HELLS (helicase, lymphoid specific) or PASG (proliferation-associated SNF2-like), a protein belonging to the SNF2 family of chromatin-remodeling ATPases, is critical for normal development of plants and mammals by establishing correct DNA methylation levels and patterns 13-16. LSH maintains genome stability in mammalian somatic cells 17, 18. LSH serves as a target for DeltaNp63alpha driving skin tumorigenesis in vivo and co-operates with the oncogenic function of E2F3 19, 20. Interestingly, LSH-mediated CG methylation can modulate gene activity and influence neuron lineage commitment 21. Reports show that LSH contributes to the malignant progression of prostate cancer, melanoma, and nasopharyngeal carcinoma 20, 22, 23. However, the clinical significance of LSH in gliomas and which mechanism involved in the regulation of LSH remain poorly known.

Glycogen synthase kinase-3β (GSK-3β) is a serine/threonine protein kinase that plays key roles in multiple pathways, and its dysregulation is implicated in many disorders, such as neurodegenerative diseases and cancers 24. Clearly, the function of GSK-3β as tumor suppressor or oncogene in cancer can differ depending on tumor type 25, 26. GSK-3β is regulated by a number of different mechanisms, the best characterized being its autoinhibition following phosphorylation of its N-terminal serine-9 residue 27. GSK-3β activity can also be regulated via interactions with other cellular proteins through the formation of protein-protein complexes. This includes proteins such as E2F1. GSK3β directly regulates E2F activity by physical interaction with the transactivation domain of E2F1 28. The E2F1 transcription factor plays a central role in cell cycle control, apoptosis and differentiation 29. Recent studies concerning the functions of E2F1 gene seem to be contradictory as this gene was described both as an oncogene as well as a tumor suppressor gene 30, 31. The nature of this duality is likely to depend on the cellular context.

Wnt signaling (hereafter referred to as Wnt/β-catenin-dependent signaling) plays pivotal roles in embryogenesis and adult tissue homeostasis through its regulation of diverse biologic functions, including cell fate specification, proliferation, and cell migration 32. Wnt ligands are secreted glycoproteins that signal through Frizzled (FZD) receptor and low-density lipoprotein receptor-related protein 5 or 6 (LRP5 or LRP6) co-receptor, leading to downregulation of glycogen synthase kinase-3 (GSK-3) activity and the initiation of the canonical Wnt/β-catenin signaling cascade 33, 34. Activation of canonical Wnt signaling culminates in the cytoplasmic accumulation of β-catenin and its translocation to the nucleus where it complexes with transcription factors and coactivators to drive context-dependent target gene expression 35, 36. Deregulation of Wnt/β-catenin signaling occurs in many types of cancer either through key driver mutations or increased Wnt ligand-mediated receptor activation 37.

Little is currently known regarding the significance of LSH to gliomas survival. We therefore sought to evaluate the role of LSH in gliomas cell survival, proliferation and tumorigenicity both in vitro and in vivo and on the mechanistic consequences of inhibiting the GSK3β/E2F1 axis. Here, we demonstrate that E2F1 directly regulates LSH expression. Surprisingly, our data reveal that the kinase activity of GSK3β is not required to exert this control. Much more, binding of E2F1 to LSH appears to be the mode of action how E2F1 regulates LSH transcriptional activity. Our data point to LSH as a potentially attractive new target for human gliomas therapy.

Material and methods

Study Participants

The Research Ethics Committee of the Xiangya hospital approved the study. Written informed consent was obtained from all participants in all studies. In this study, we included patients who had gliomas of histologic grade (I, II, III, or IV). A total of 128 cases and controls from the Xiangya Hospital were used as the discovery set in this study and the characteristics of these patients were shown in Table 1.

Table 1

Patient characteristics.

Groups	N=128
Age (years)
Median	42
Range	7-72
Gender
Male	67(52.3%)
Female	61(47.7%)
Survival time (Months)
Median	36
Range	2-131
60 or more	15(11.7%)
Under 60	113(88.3%)
Histological diagnosis
Pilocytic astrocytoma (A I)	4(3.1%)
Diffuse astrocytoma (A II)	53(41.4%)
Anaplastic astrocytoma (AA III)	39(30.5%)
Glioblastoma (GB IV)	32(25%)

Immunohistochemistry (IHC) analysis

Gliomas and related diseases biopsies were validated and obtained from Department of Pathology in Xiangya Hospital. IHC analysis of paraffin sections from gliomas tissues was described previously 38. The sections were incubated with antibodies as indicated. The images were surveyed and captured using a CX41 microscope (OLYMPUS, Tokyo, Japan) with the Microscope Digital Camera System DP-72 (OLYMPUS, Tokyo, Japan) and differentially quantified by two pathologists who were from the Xiangya Hospital, Changsha, China.

GSK3β and LRP6 staining were considered positively by ascertaining cytoplasmic staining, whereas LSH and E2F1 were considered positively by nuclear expression. The determination results were obtained from semi-quantitative classification according to 10 or more visual fields (×200). The slides were first scored as 0 (negative), 1 (buff), 2 (pale brown), and 3 (tan). Positive expression of LSH, E2F1, GSK3β or LRP6 was scored as 0 (negative), 1+ (<10% of positively-staining tumor cells), 2+ (11-50% of positively-staining tumor cells), 3+ (50-75% of positively-staining tumor cells), and 4+ (>75% of positively-staining tumor cells). Both the scores by multiply were regarded as the determination result.

Antibodies, plasmids, siRNAs, chemicals and cell cultures

Primary antibodies LRP6, GSK3β, c-Myc, E2F1, p-GSK3β for IHC analysis and Western Blot were purchased from Cell Signaling (Danvers, MA). Primary antibody for LSH and β-actin were purchased from Sigma-Aldrich (St. Louis, MO). The TRC-shE2F1, and TRC-shLRP6 lentivirus plasmids were purchased from Genechem (www.genechem.com.cn). Gliomas cells including HS683, U373, SKMG-4, SF126, SHG-44, SF295, and U251 cell lines were purchased from the American Type Culture Collection (ATCC; Manassas, VA), and were cultured in DMEM (GIBCO, Life Technologies, Basel, Switzerland) medium with fetal bovine serum (FBS) to a final concentration of 10%. All cell lines were maintained at 37°C with 5% CO2.

Western Blot, MTS assay, colony formation assay

Western Blot and MTS assay were essentially performed as previously described 38, 39. Cell viability was measured using a CellTiter-Glo Luminescent Cell Viability Assay Kit (MTS) purchased from Promega Corp (Madison, WI) and used according to the manufacturer's protocol. Measuring the absorbance at 450 nm using a microplate reader assessed the number of viable cells.

Chromatin immunoprecipitation (ChIP) assay

ChIP assays were essentially performed as previously described 38, 39. ChIP DNA was analyzed by qPCR with SYBR Green (Bio-Rad) in ABI-7500 (Applied Biosystems) using the primers specified in the following, site 1: LSH forward primer: 5'- CTGACATCCTCGTGCAGATAC-3', reverse primer: 5'- AGCCTGTAACTATCCTGTGAGA-3'; site 2: LSH forward primer: 5'- TACGGTTGCCACAGGTCAG-3', reverse primer: 5'- GCCCAGCCTTCTAGCCAAA-3'. The E2F1 antibodies used were as followed: E2F1 and normal mouse IgG (Millipore).

Nude mice and study approval

A xenograft tumor formation was essentially performed as previously described 38. Mice were injected with C6 (2 × 106 cells/mice) and their corresponding stable clones with knockdown of LSH expression via mammary fat pad. Data were analyzed using Student's t test; a P value less than 0.05 was considered significant.

All procedures for animal study were approved by the Institutional Animal Care and Use Committee of the Central South University of Xiangya School of Medicine and conform to the legal mandates and federal guidelines for the care and maintenance of laboratory animals.

Statistics

Progression-free survival (PFS) was calculated from the day of first surgery until tumor progression, death, or end of follow-up. Overall survival (OS) was calculated from the day of first surgery until death or end of follow-up. Log- rank test was used to analyze survival data. When more than two groups were compared, we tested for the equality of groups regarding PFS or OS and present global p values indicating that at least two groups were different. Cox regression models were built to assess the association of clinical parameters and molecular groups and expression pro ling with OS. The statistic deviance (minus twice the logarithm of the maximized likelihood) was used to measure the model t. The experiments were repeated at least three times. Results are expressed as mean ± SD or SEM as indicated. A 2-tailed Student's t test was used for intergroup comparisons. A p value less than 0.05 was considered statistically significant (*p<0.05, ** p <0.01, *** p <0.001).

Results

LSH is highly expressed in glioblastomas and correlated with gliomas progression and poor prognosis of patients with gliomas

We first determined whether LSH expression was associated with gliomas of varying World Health Organization grades. We first identified these tumors with H&E staining (Figure 1A), a total of 128 archived paraffin-embedded gliomas specimens with extensive clinical follow-up, including 4 cases of pilocytic astrocytoma (World Health Organization grade I), 53 cases of diffuse astrocytoma (grade II), 39 cases of anaplastic astorcytoma (grade III), and 32 cases of glioblastomas (grade IV) were analyzed by IHC staining with antibody against human LSH. We found that LSH was up-regulated in all four grades of gliomas when compared with that in normal brain tissues. Overall, expression of LSH protein was detected in 127 of 128 glioma specimens (99.2%), whereas 0.8% of cases (1/128) were LSH-. Figure 1B showed examples of IHC stained tumor specimens of each of the four World Health Organization grade gliomas. Specifically, moderate to strong nuclear staining of LSH protein was evident in tumor cells in these primary gliomas tissues (Figure 1B). In contrast, minimal immunoreactivity of LSH was detected in control normal brain tissues (Figure 1B). In all, 18 cases were classified as weakly positive (immunoreactivity scores of 1-3), 94 were identified as medium positive (scores of 4-9), and the remaining 16 cases (12.4%) as strongly positive (scores of 10-12). Next, we addressed the question whether LSH is associated with the progression of gliomas. Quantitative IHC analysis revealed that density of LSH stain in newly diagnosed gliomas of each grade of I to IV was higher than that in normal brain tissues (p<0.05) and increased along with the tumor grades (Figure 1C).

Figure 1

LSH is highly expressed in gliomas and correlated with gliomas progression and poor prognosis of patients with gliomas. (A) H & E staining was used to show different stages of gliomas. (B) A series of tissues samples was subjected to IHC with LSH-specific antibody. The panels shown here were representative of LSH staining in different stages gliomas including normal brain. (C) Anti-LSH staining intensity was quantified in three microscopic fields for each tissues section and expression level of LSH in different stages of gliomas as indicated. (D) Kaplan-Meier curves for overall survival of the related samples of LSH expression level measured in gliomas. (E) Ectopic stable expression of LSH in C6 cells. A xenograft model of tumor growth was established in nude mice to evaluate tumor formation (F) and tumor weight (G) of C6 cells with a stable expression of LSH to form tumors with. ** p <0.01, *** p <0.001.

Multivariate analysis showed that the expression level of LSH was independent of clinical risk factor such as gender, sex, and tumor size, but were correlated with shorter survival time, suggesting that LSH could be an independent prognostic factor. Of note, Kaplan-Meier analysis and the log-rank test revealed that levels of LSH expression in primary gliomas specimens were reversely correlated with patients' survival time with a high degree of statistical significance (p<0.01, Figure 1D).

To uncover the physiological role of LSH in gliomas, we established the stable expressed LSH in C6 cells, a mouse derived from glioblastoma cells (Figure 1E). We injected 2×106 of C6 cells (with or without LSH ectopic stable expression), and observed that stable ectopic expression of LSH significantly promoted tumor formation and tumor weight, while the body weight did not change significantly in either group. Taken together, up-regulation of LSH in newly diagnosed gliomas was associated with the progression of gliomas and correlated with the poor prognosis of the disease.

E2F1 expression level is linked with LSH expression in gliomas

Using bioinformatics, we found that a potential binding site of transcription factor E2F1 existed in the regulatory region of LSH gene. Therefore, we linked the potential connection between E2F1 and LSH. We detected E2F1 expression among these tumor tissues. Specifically, moderate to strong nuclear staining of E2F1 protein was evident in tumor cells in these primary gliomas tissues (Figure 2A). In contrast, minimal immunoreactivity of LSH was detected in control normal brain tissues (Figure 2A). In all, 0.8 % of cases (1/128) were E2F1-. 11 cases were classified as weakly positive (immunoreactivity scores of 1-3), 76 were identified as medium positive (score of 4-9), and the remaining 40 cases (31%) as strongly positive (scores of 10-12). Next, we addressed the question whether E2F1 is associated with the progression of gliomas. Quantitative IHC analysis revealed that density of E2F1 stain in gliomas of each grade of I to IV was higher than that in normal brain tissues (p<0.05) and increased along with the tumor grades (Figure 2B).

Figure 2

E2F1 expression level is linked with LSH expression in gliomas. (A) A series of tissues samples was subjected to IHC with E2F1-specific antibody. The panels shown here were representative of E2F1 staining in different stages gliomas including normal brain. (B). Anti-E2F1 staining intensity was quantified in three microscopic fields for each tissues section and expression level of LSH in different stages of gliomas as indicated. (C) Kaplan-Meier curves for overall survival of the related samples of E2F1 expression level measured in gliomas. (E). LSH expression was analyzed in the depletion of E2F1 in U251 cells by Western Blot analysis. (E) The MTT assay was performed to assess cell viability in U251 cells that were stably knockdown of E2F1 in U251 cells. *p<0.05, ** p <0.01, *** p <0.001.

Multivariate analysis also showed that the expression level of E2F1 was independent of clinical risk factor such as gender, sex, and tumor size, but were correlated with shorter survival time. Of note, Kaplan-Meier analysis and the log-rank test revealed that levels of E2F1expression in primary gliomas specimens were reversely correlated with patients' survival time with a high degree of statistical significance (p <0.01, Figure 2C).

To confirm the potential correlation between LSH and E2F1, we screened LSH and E2F1 expression in a panel of glioblastoma cells using Western Blot analysis (supplementary Figure S1), data indicated a potential correlation between E2F1 and LSH existed, and then we selected two glioblastoma cell lines, U251 and HS683 for subsequent studies.

To further validate the physiological signaling pathway between LSH and E2F1 in glioblastoma, we generated stable E2F1 knockdown in U251 cells from two separated target sequence. The knockdown approach successfully reduced E2F1 protein to less than 10%. The knockdown of E2F1 resulted in significantly reduced LSH expression (Figure 2D). Furthermore, depletion of E2F1 reduced the growth of U251 cells in culture (Figure 2E). Taken together, up-regulation E2F1 in primary glioma tumors was associated with the progression of glioma and correlated with LSH expression.

GSK3β is highly expressed in gliomas and linked with E2F1 binding to the lsh promoter

On the basis that GSK3β binds to E2F1 and regulates its transcriptional activity 28, we first addressed whether GSK3β expression was associated with gliomas. In all, 23.4% of cases (30/128) were GSK3β-. 23 cases were classified as weakly positive (immunoreactivity scores of 1-3), 58 were identified as medium positive (score of 4-9), and the remaining 17 cases (13.2%) as strongly positive (scores of 10-12). Of the GSK3β+ cases, showed diffuse strong immunoreactivity in the cytoplasm of tumor cells (Figure 3A). Next, we demonstrated that the expression of GSK3β was significantly increased in advanced clinical stage IV compared to earlier stages of (p<0.05) (Figure 3B). Kaplan-Meier plotter performed on a cohort of these glioblastoma showed that lower expression of GSK3β linked with overall survival in all glioblastoma (Figure 3C).

Figure 3

GSK3β is highly expressed in gliomas and linked with E2F1 binding to the lsh promoter. (A) A series of tissues samples was subjected to IHC with GSK3β -specific antibody. The panels shown here were representative of GSK3β staining in different stages gliomas including normal brain. (B). Anti- GSK3β staining intensity was quantified in three microscopic fields for each tissues section and expression level of LSH in different stages of gliomas as indicated. (C) Kaplan-Meier curves for overall survival of the related samples of GSK3β expression level measured in gliomas. ChIP analysis of HS683 (D) and U251 (E) cells was performed to detect E2F1 binding to the lsh promoter. ** p <0.01, *** p <0.001.

SB216763 is a potent and selective, ATP-competitive GSK3 inhibitor that is equally effective at inhibiting human GSK3α and GSK3β. Then, we first treated H683 cells used SB216763, we performed a ChIP assay to examine E2F1 binding to the lsh promoter. E2F1 was recruited to the lsh promoter region, and its binding was increased significantly after the treatment of SB216763 (Figure 3). Similar findings were shown in U251 cells. However, both pGSK3βSer9 and β-catenin remained the same level in the depletion of E2F1 in U251 cells (supplementary Figure S2). Taken together, GSK3β in primary glioma tumors was associated with the progression of glioma and correlated with E2F1 binding to the lsh promoter region.

To confirm the role of GSK3β in the regulation of LSH, we treated U251 cells with SB216763 as indicated concentrations for 12 h, Western blot showed that the levels of LSH, pGSK3βSer9, and E2F1 increased after the treatment of SB216763, whereas total GSK3β and β-catenin remained the same level (Figure 4A). Similar findings were shown in HS683 after the treatment of SB216763 (Figure 4B). We further confirmed the inhibition of GSK3β with the treatment of SB216763 increased LSH expression (Figure 4C) as well as pGSK3βSer9, and E2F1 in both U251 and HS683 cells (Figure 4D). Taken together, we found that the inhibition of GSK3β signaling pathway increase LSH in glioblastoma cells.

Figure 4

Inhibition of GSK3β increased LSH expression. U251 (A) and HS683 (B) with treatment of SB216763 with different concentration as indicated were examined for the expression of LSH, p-GSK3β, GSK3β, E2F1, β-catenin and GAPDH by Western analysis. U251 (C) and HS683 (D) with treatment of 10μM SB216763 with time as indicated were examined for the expression of LSH, p-GSK3β, GSK3β, E2F1, β-catenin and GAPDH by Western analysis.

LRP6 is highly expressed in gliomas

Wnt signaling is activated upon binding of Wnt ligands to Frizzled receptors and the low-density lipoprotein receptor-related protein (LRP) on the surface of cells and LRP6 is an upstream regulator of GSK3β signaling pathway 40, we then addressed whether LRP6 expression was associated with gliomas. In all, 14.0% of cases (18/128) were LRP6-. 19 cases were classified as weakly positive (immunoreactivity scores of 1-3), 89 were identified as medium positive (score of 4-9), and only the remaining 2 cases (1.50%) as strongly positive (scores of 10-12). Of the LRP6+ cases, showed diffuse strong immunoreactivity in the cytoplasm of tumor cells (Figure 5A).

Figure 5

LRP6 is highly expressed in gliomas. (A) A series of tissues samples was subjected to IHC with LRP6-specific antibody. The panels shown here were representative of LRP6 staining in different stages gliomas including normal brain. (B) Anti-LRP6 staining intensity was quantified in three microscopic fields for each tissues section and expression level of LSH in different stages of gliomas as indicated. (C) Kaplan-Meier curves for overall survival of the related samples of LRP6 expression level measured in gliomas. ChIP analysis of HS683 (D) and U251 (E) cells was performed to detect E2F1 binding to the lsh promoter. The correlations of LSH with LRP6 (D) and E2F1(E) were analyzed. *p<0.05, ** p <0.01, *** p <0.001.

Next, we addressed that the expression of LRP6 was significantly increased in advanced clinical stage IV compared to earlier stages of (p<0.05) (Figure 5B). Of note, Kaplan-Meier plotter performed on a cohort of these glioblastoma showed that lower expression of LRP6 linked with overall survival in all glioblastoma (Figure 5C). We analyzed the potential correlation between LRP6 and LSH, and we found that LSH expression level was positively related with LRP6 level (Figure 5D) and with E2F1 level (Figure 5E) respectively.

Furthermore, to address the connection of LRP6 and LSH, we generated stable LRP6 knockdown in U251 cancer cells. The knockdown approach successfully reduced LRP6 protein to less than 15%. The knockdown of LSH resulted in significantly reduced LSH expression (Figure 6A). Next, we performed a ChIP assay to examine E2F1 binding to the lsh promoter in the depletion of LRP6, knowndown of LRP6 significantly deceased the enrichment of E2F1 to the lsh promoter region (Figure 6B). Furthermore, depletion of LRP6 reduced the growth of U251 cells in culture (Figure 6C) and the colony number (Figure 6D). Taken together, activation of LRP6 was associated with the expression of LSH in gliomas, indicating that the LRP6-GSK3β-E2F1 axis was correlated with LSH expression in gliomas.

Figure 6

Depletion of LRP6 reduced LSH expression. (A) LSH expression was analyzed in the depletion of LRP6 in U251 cells by Western Blot analysis. (B) ChIP analysis of U251 cells was performed to detect E2F1 binding sites to the lsh promoter. (C) The MTT assay was performed to assess cell viability in U251 cells that were stably knockdown of LRP6. (D) Colony formation assay was performed to detect tumor cell formation in the depletion of LSH. *p<0.05, ** p <0.01, *** p <0.001.

Discussion

Newly predicted gliomas drivers relative to the earlier TCGA analyses were genes associated with chromatin organization. Diffusely infiltrating gliomas in adults are now separated into three overarching tumor groups with distinct natural histories, responses to treatment and outcomes: isocitrate dehydrogenase (IDH)-mutant, 1p/19q co-deleted tumors with mostly oligodendroglial morphology that are associated with the best prognosis; IDH-mutant, 1p/19q non-co-deleted tumors with mostly astrocytic histology that are associated with intermediate outcome; and IDH wild-type, mostly higher WHO grade (III or IV) tumors that are associated with poor prognosis 8, 10, 11.

However, about 80.6% of glioblastoma is characteristics of IDH wild-type 8. We found about 22.9 % of glioblastoma was characteristics of IDH mutation, which is consistent with this finding (Data not shown). Here, for the first time we, addressed that LSH expression is closely linked with the progression of gliomas, LSH functions as a new chromatin modifier in gliomas.

Lymphoid-specific helicase (LSH) acts a chromatin modifier in DNA methylation 41, depletion of LSH increases DNA hypomethylation in 5-mC in repeats and somatic genes, leading to transcribed satellites repeat expression 42, 43. Alterations in DNA methylation, including the 
hypomethylation of oncogenes and the hypermethylation of tumor suppressor genes, indicate that DNA methylation plays an important role in tumorigenesis including gliomas 7, 44, 45. Here we first demonstrate that LSH might function as an oncogene in gliomas, the mechanism remains further identification. 5-hydroxymethylcytosine (5-hmC) is an epigenetic mark that can be converted from 5-methylcytosine (5-mC) by the tet-eleven translocation (TET) gene family, whereas IDH mutants could establishes CpG island methylator phenotype in glioma by remodelling the methylome 46-48. Oncometabolite 2-Hydroxyglutarate (2-HG) is a competitive inhibitor of α-KG-dependent dioxygenases in gliomas that carry mutations of IDH1 and IDH2 48, 49. Loss of 5-hmC in solid tumors does not have driver properties in cancer initiation but rather reinforces the molecular networks functioning in cancer cells 50. However, loss of 5-hmC is a frequent event in gliomas, independent of IDH1 mutation 51. Interestingly, 5-hmC levels are significantly associated with long interspersed nucleotide element-1 (LINE-1) methylation that is regarded as a surrogate marker for global DNA methylation level, however, TETs mRNA expression is not associated with LINE-1 methylation, indicating other factor involves in the process 52. We found that LSH promoted genome stability through silencing satellites expression by affecting 5-hmC levels in pericentromeric satellite repeats (Jia J, et al. Submitted). Recently, depletion of LSH maintained the propensity toward the neural lineage during in vivo differentiation 21, indicating that LSH directly control several neuron related genes that might be linked with gliomas progression in independent manner of DNA methylation.

Wnt morphogens play leading roles in embryonic development as well as in adult stem cell biology. Blocking of the interact complex between Wnt proteins and their coreptors including LRP6 in glioblastoma cells contributes to the anti-tumor effects 53. Knockdown of LRP6 by miRNA and shRNA decrease cell growth in glioblastoma cells 54. Here, we first show that the activation of LRP6/GSK3β/E2F1 in glioblastoma patients is linked with LSH overexpression. GSK3β inhibition in glioblastoma cells induces c-Myc-dependent recruitment of DNA methylation transferase 3A (DNMT3A), leading to O6-methylguanine DNA methyltransferase (MGMT) promoter methylation and consequent silencing of MGMT expression, a predictor for resistance to temozolomide, in tumor cells in patients with recurrent glioblastoma 55. Here, we also found that GSK3β inhibition induces LSH expression, indicating that GSK3β involves in LSH expression in vivo. E2F1 is a potent and specific inhibitor of β-catenin/T-cell factor (TCF)-dependent transcription, and E2F1 deregulation suppresses β-catenin activity in an adenomatous polyposis coli (APC)/GSK3-independent manner, reducing the expression of key β-catenin targets 29.

In summary, this study reveals evidence demonstrating a mechanism by which upregulated promoted gliomas. A mechanistic link between LSH expression and activation of the LPR6/ GSK3β/E2F1 axis in gliomas illustrates a novel role of LSH in malignant gliomas. These results provide new insights into the mechanisms underlying the signaling pathway in LSH expression in the carcinogenesis of gliomas. Understanding the roles of LSH in glioma progression will not only advance our knowledge of gliomas, but also could establish LSH as a potential therapeutic target for the treatment of these deadly brain cancers.

Supplementary figures.

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