Literature DB >> 28035783

Separating Dipolar and Chemical Exchange Magnetization Transfer Processes in 1 H-CEST.

Tairan Yuwen1, Ashok Sekhar1, Lewis E Kay1,2.   

Abstract

An amide 1 H-Chemical Exchange Saturation Transfer (CEST) experiment is presented for studies of conformational exchange in proteins. The approach, exploiting spin-state-selective magnetization transfer, completely suppresses undesired NOE-based dips in CEST profiles so that chemical exchange processes can be studied. The methodology is demonstrated with applications involving proteins that interconvert on the millisecond timescale between major and invisible minor states, and accurate amide 1 H chemical shifts of the minor conformer are obtained in each case. The spin-state-selective magnetization transfer approach offers unique possibilities for quantitative studies of protein exchange through 1 H-CEST.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  amide protons; conformational dynamics; cross relaxation; proteins; proton CEST

Year:  2016        PMID: 28035783     DOI: 10.1002/anie.201610759

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  16 in total

1.  Probing the excited-state chemical shifts and exchange parameters by nitrogen-decoupled amide proton chemical exchange saturation transfer (HNdec-CEST).

Authors:  Qinglin Wu; Benjamin A Fenton; Jessica L Wojtaszek; Pei Zhou
Journal:  Chem Commun (Camb)       Date:  2017-07-27       Impact factor: 6.222

Review 2.  Probing conformational dynamics in biomolecules via chemical exchange saturation transfer: a primer.

Authors:  Pramodh Vallurupalli; Ashok Sekhar; Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-19       Impact factor: 2.835

3.  Longitudinal relaxation optimized amide 1H-CEST experiments for studying slow chemical exchange processes in fully protonated proteins.

Authors:  Tairan Yuwen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-03-29       Impact factor: 2.835

4.  Probing slow timescale dynamics in proteins using methyl 1H CEST.

Authors:  Tairan Yuwen; Rui Huang; Lewis E Kay
Journal:  J Biomol NMR       Date:  2017-06-24       Impact factor: 2.835

Review 5.  NMR methods for exploring 'dark' states in ligand binding and protein-protein interactions.

Authors:  Vitali Tugarinov; Alberto Ceccon; G Marius Clore
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2021-11-02       Impact factor: 9.795

6.  The A39G FF domain folds on a volcano-shaped free energy surface via separate pathways.

Authors:  Ved P Tiwari; Yuki Toyama; Debajyoti De; Lewis E Kay; Pramodh Vallurupalli
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-16       Impact factor: 11.205

7.  Towards autonomous analysis of chemical exchange saturation transfer experiments using deep neural networks.

Authors:  Gogulan Karunanithy; Tairan Yuwen; Lewis E Kay; D Flemming Hansen
Journal:  J Biomol NMR       Date:  2022-05-27       Impact factor: 2.582

8.  Conserved conformational selection mechanism of Hsp70 chaperone-substrate interactions.

Authors:  Ashok Sekhar; Algirdas Velyvis; Guy Zoltsman; Rina Rosenzweig; Guillaume Bouvignies; Lewis E Kay
Journal:  Elife       Date:  2018-02-20       Impact factor: 8.140

9.  Efficient Detection of Structure and Dynamics in Unlabeled RNAs: The SELOPE Approach.

Authors:  Judith Schlagnitweit; Emilie Steiner; Hampus Karlsson; Katja Petzold
Journal:  Chemistry       Date:  2018-03-25       Impact factor: 5.236

Review 10.  Allosteric Regulation at the Crossroads of New Technologies: Multiscale Modeling, Networks, and Machine Learning.

Authors:  Gennady M Verkhivker; Steve Agajanian; Guang Hu; Peng Tao
Journal:  Front Mol Biosci       Date:  2020-07-09
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