Literature DB >> 28028744

Bacterial production of site specific 13C labeled phenylalanine and methodology for high level incorporation into bacterially expressed recombinant proteins.

Bhargavi Ramaraju1, Hana McFeeters1, Bernhard Vogler1, Robert L McFeeters2.   

Abstract

Nuclear magnetic resonance spectroscopy studies of ever larger systems have benefited from many different forms of isotope labeling, in particular, site specific isotopic labeling. Site specific 13C labeling of methyl groups has become an established means of probing systems not amenable to traditional methodology. However useful, methyl reporter sites can be limited in number and/or location. Therefore, new complementary site specific isotope labeling strategies are valuable. Aromatic amino acids make excellent probes since they are often found at important interaction interfaces and play significant structural roles. Aromatic side chains have many of the same advantages as methyl containing amino acids including distinct 13C chemical shifts and multiple magnetically equivalent 1H positions. Herein we report economical bacterial production and one-step purification of phenylalanine with 13C incorporation at the Cα, Cγ and Cε positions, resulting in two isolated 1H-13C spin systems. We also present methodology to maximize incorporation of phenylalanine into recombinantly overexpressed proteins in bacteria and demonstrate compatibility with ILV-methyl labeling. Inexpensive, site specific isotope labeled phenylalanine adds another dimension to biomolecular NMR, opening new avenues of study.

Entities:  

Keywords:  Aromatic amino acids; Isolated 1H-13C spin systems; NMR spectroscopy; Phenylalanine; Site specific isotope labeling; Stable isotope incorporation

Mesh:

Substances:

Year:  2016        PMID: 28028744      PMCID: PMC5311020          DOI: 10.1007/s10858-016-0081-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  52 in total

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Review 2.  Implications of aromatic-aromatic interactions: From protein structures to peptide models.

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3.  Synthesis of a 13C-methyl-group-labeled methionine precursor as a useful tool for simplifying protein structural analysis by NMR spectroscopy.

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4.  Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR.

Authors:  Ioannis Gelis; Alexandre M J J Bonvin; Dimitra Keramisanou; Marina Koukaki; Giorgos Gouridis; Spyridoula Karamanou; Anastassios Economou; Charalampos G Kalodimos
Journal:  Cell       Date:  2007-11-16       Impact factor: 41.582

5.  Carbon relaxation in randomly fractionally 13C-enriched proteins.

Authors:  A J Wand; R J Bieber; J L Urbauer; R P McEvoy; Z Gan
Journal:  J Magn Reson B       Date:  1995-08

6.  Design of a recombinant Escherichia coli for producing L-phenylalanine from glycerol.

Authors:  Mayura Thongchuang; Piamsook Pongsawasdi; Yusuf Chisti; Kanoktip Packdibamrung
Journal:  World J Microbiol Biotechnol       Date:  2012-06-20       Impact factor: 3.312

7.  Biosynthetic 13C labeling of aromatic side chains in proteins for NMR relaxation measurements.

Authors:  Kaare Teilum; Ulrika Brath; Patrik Lundström; Mikael Akke
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

8.  α-Ketoacids as precursors for phenylalanine and tyrosine labelling in cell-based protein overexpression.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11-22       Impact factor: 2.835

Review 9.  Use of stable isotope labeling by amino acids in cell culture (SILAC) for phosphotyrosine protein identification and quantitation.

Authors:  Guoan Zhang; Thomas A Neubert
Journal:  Methods Mol Biol       Date:  2009

10.  Engineering of a glycerol utilization pathway for amino acid production by Corynebacterium glutamicum.

Authors:  Doris Rittmann; Steffen N Lindner; Volker F Wendisch
Journal:  Appl Environ Microbiol       Date:  2008-08-29       Impact factor: 4.792

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  1 in total

Review 1.  Late metabolic precursors for selective aromatic residue labeling.

Authors:  Julia Schörghuber; Leonhard Geist; Gerald Platzer; Michael Feichtinger; Marilena Bisaccia; Lukas Scheibelberger; Frederik Weber; Robert Konrat; Roman J Lichtenecker
Journal:  J Biomol NMR       Date:  2018-05-28       Impact factor: 2.835

  1 in total

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