Literature DB >> 24100333

The IMAGINE instrument: first neutron protein structure and new capabilities for neutron macromolecular crystallography.

Flora Meilleur1, Parthapratim Munshi, Lee Robertson, Alexandru D Stoica, Lowell Crow, Andrey Kovalevsky, Tibor Koritsanszky, Bryan C Chakoumakos, Robert Blessing, Dean A A Myles.   

Abstract

The first high-resolution neutron protein structure of perdeuterated rubredoxin from Pyrococcus furiosus (PfRd) determined using the new IMAGINE macromolecular neutron crystallography instrument at the Oak Ridge National Laboratory is reported. Neutron diffraction data extending to 1.65 Å resolution were collected from a relatively small 0.7 mm(3) PfRd crystal using 2.5 d (60 h) of beam time. The refined structure contains 371 out of 391, or 95%, of the D atoms of the protein and 58 solvent molecules. The IMAGINE instrument is designed to provide neutron data at or near atomic resolution (1.5 Å) from crystals with volume <1.0 mm(3) and with unit-cell edges <100 Å. Beamline features include novel elliptical focusing mirrors that deliver neutrons into a 2.0 × 3.2 mm focal spot at the sample position with full-width vertical and horizontal divergences of 0.5 and 0.6°, respectively. Variable short- and long-wavelength cutoff optics provide automated exchange between multiple-wavelength configurations (λmin = 2.0, 2.8, 3.3 Å to λmax = 3.0, 4.0, 4.5, ∼20 Å). These optics produce a more than 20-fold increase in the flux density at the sample and should help to enable more routine collection of high-resolution data from submillimetre-cubed crystals. Notably, the crystal used to collect these PfRd data was 5-10 times smaller than those previously reported.

Entities:  

Keywords:  IMAGINE; neuton macromolecular crystallography; neutron diffraction; rubredoxin

Mesh:

Substances:

Year:  2013        PMID: 24100333     DOI: 10.1107/S0907444913019604

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  33 in total

1.  Large-volume protein crystal growth for neutron macromolecular crystallography.

Authors:  Joseph D Ng; James K Baird; Leighton Coates; Juan M Garcia-Ruiz; Teresa A Hodge; Sijay Huang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-30       Impact factor: 1.056

2.  BraggNet: integrating Bragg peaks using neural networks.

Authors:  Brendan Sullivan; Rick Archibald; Jahaun Azadmanesh; Venu Gopal Vandavasi; Patricia S Langan; Leighton Coates; Vickie Lynch; Paul Langan
Journal:  J Appl Crystallogr       Date:  2019-07-26       Impact factor: 3.304

3.  Neutron and X-ray analysis of the Fenna-Matthews-Olson photosynthetic antenna complex from Prosthecochloris aestuarii.

Authors:  Xun Lu; Brinda Selvaraj; Sudipa Ghimire-Rijal; Gregory S Orf; Flora Meilleur; Robert E Blankenship; Matthew J Cuneo; Dean A A Myles
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-02-20       Impact factor: 1.056

4.  Titration of ionizable groups in proteins using multiple neutron data sets from a single crystal: application to the small GTPase Ras.

Authors:  Ryan Knihtila; Alicia Y Volmar; Flora Meilleur; Carla Mattos
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-01-23       Impact factor: 1.056

5.  Neutron Crystal Structure of RAS GTPase Puts in Question the Protonation State of the GTP γ-Phosphate.

Authors:  Ryan Knihtila; Genevieve Holzapfel; Kevin Weiss; Flora Meilleur; Carla Mattos
Journal:  J Biol Chem       Date:  2015-10-29       Impact factor: 5.157

6.  Preliminary joint X-ray and neutron protein crystallographic studies of ecDHFR complexed with folate and NADP+.

Authors:  Qun Wan; Andrey Y Kovalevsky; Mark A Wilson; Brad C Bennett; Paul Langan; Chris Dealwis
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-25       Impact factor: 1.056

7.  Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase.

Authors:  William B O'Dell; Pratul K Agarwal; Flora Meilleur
Journal:  Angew Chem Int Ed Engl       Date:  2016-12-22       Impact factor: 15.336

8.  Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states.

Authors:  Michael T Banco; Vidhi Mishra; Andreas Ostermann; Tobias E Schrader; Gary B Evans; Andrey Kovalevsky; Donald R Ronning
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

9.  Neutron crystallographic studies of T4 lysozyme at cryogenic temperature.

Authors:  Le Li; Shantanu Shukla; Flora Meilleur; Robert F Standaert; Josh Pierce; Dean A A Myles; Matthew J Cuneo
Journal:  Protein Sci       Date:  2017-09-06       Impact factor: 6.725

10.  Protein kinase A in the neutron beam: Insights for catalysis from directly observing protons.

Authors:  Oksana Gerlits; Kevin L Weiss; Matthew P Blakeley; Gianluigi Veglia; Susan S Taylor; Andrey Kovalevsky
Journal:  Methods Enzymol       Date:  2020-01-17       Impact factor: 1.600

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