Literature DB >> 21568312

Probing oxygen activation sites in two flavoprotein oxidases using chloride as an oxygen surrogate.

Phaneeswara-Rao Kommoju1, Zhi-wei Chen, Robert C Bruckner, F Scott Mathews, Marilyn Schuman Jorns.   

Abstract

A single basic residue above the si-face of the flavin ring is the site of oxygen activation in glucose oxidase (GOX) (His516) and monomeric sarcosine oxidase (MSOX) (Lys265). Crystal structures of both flavoenzymes exhibit a small pocket at the oxygen activation site that might provide a preorganized binding site for superoxide anion, an obligatory intermediate in the two-electron reduction of oxygen. Chloride binds at these polar oxygen activation sites, as judged by solution and structural studies. First, chloride forms spectrally detectable complexes with GOX and MSOX. The protonated form of His516 is required for tight binding of chloride to oxidized GOX and for rapid reaction of reduced GOX with oxygen. Formation of a binary MSOX·chloride complex requires Lys265 and is not observed with Lys265Met. Binding of chloride to MSOX does not affect the binding of a sarcosine analogue (MTA, methylthioactetate) above the re-face of the flavin ring. Definitive evidence is provided by crystal structures determined for a binary MSOX·chloride complex and a ternary MSOX·chloride·MTA complex. Chloride binds in the small pocket at a position otherwise occupied by a water molecule and forms hydrogen bonds to four ligands that are arranged in approximate tetrahedral geometry: Lys265:NZ, Arg49:NH1, and two water molecules, one of which is hydrogen bonded to FAD:N5. The results show that chloride (i) acts as an oxygen surrogate, (ii) is an effective probe of polar oxygen activation sites, and (iii) provides a valuable complementary tool to the xenon gas method that is used to map nonpolar oxygen-binding cavities.

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Year:  2011        PMID: 21568312      PMCID: PMC3448946          DOI: 10.1021/bi200388g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  43 in total

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Journal:  Biochemistry       Date:  2010-05-04       Impact factor: 3.162

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5.  Crystallization and preliminary X-ray diffraction studies of a deglycosylated glucose oxidase from Aspergillus niger.

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Journal:  Biochemistry       Date:  2006-05-16       Impact factor: 3.162

7.  Monomeric sarcosine oxidase: structure of a covalently flavinylated amine oxidizing enzyme.

Authors:  P Trickey; M A Wagner; M S Jorns; F S Mathews
Journal:  Structure       Date:  1999-03-15       Impact factor: 5.006

8.  Biosynthesis of covalently bound flavin: isolation and in vitro flavinylation of the monomeric sarcosine oxidase apoprotein.

Authors:  Alshaimaa Hassan-Abdallah; Robert C Bruckner; Guohua Zhao; Marilyn Schuman Jorns
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9.  Characterization of the FAD-containing N-methyltryptophan oxidase from Escherichia coli.

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Journal:  Biochemistry       Date:  2001-02-06       Impact factor: 3.162

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Authors:  Justine P Roth; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-27       Impact factor: 11.205

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6.  Enzymatic control of dioxygen binding and functionalization of the flavin cofactor.

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7.  Reverse structural genomics: an unusual flavin-binding site in a putative protease from Bacteroides thetaiotaomicron.

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8.  Oxygen Pathways and Allostery in Monomeric Sarcosine Oxidase via Single-Sweep Free-Energy Reconstruction.

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9.  Linear and Branched PEIs (Polyethylenimines) and Their Property Space.

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10.  The 1.6 Å crystal structure of pyranose dehydrogenase from Agaricus meleagris rationalizes substrate specificity and reveals a flavin intermediate.

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